EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018635 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 96059 bases
Position: chr13:59142184-59238242
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0034716	ResIII	PF04851.15	1.8e-11	1	1
MGP_CAROLIEiJ_P0034719	ResIII	PF04851.15	2.3e-11	1	1
MGP_CAROLIEiJ_P0034717	ResIII	PF04851.15	2.4e-11	1	1
MGP_CAROLIEiJ_P0034714	ResIII	PF04851.15	1.3e-10	1	1
MGP_CAROLIEiJ_P0034720	ResIII	PF04851.15	1.3e-10	1	1
MGP_CAROLIEiJ_P0034713	ResIII	PF04851.15	1.1e-09	1	1
MGP_CAROLIEiJ_P0034716	DEAD	PF00270.29	4.8e-07	1	1
MGP_CAROLIEiJ_P0034720	DEAD	PF00270.29	5.6e-07	1	1
MGP_CAROLIEiJ_P0034719	DEAD	PF00270.29	7e-07	1	1
MGP_CAROLIEiJ_P0034717	DEAD	PF00270.29	7.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0034713	-	1592	-	MGP_CAROLIEiJ_P0034713	467 (aa)	-	-
MGP_CAROLIEiJ_T0034715	-	1822	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0034714	-	3435	-	MGP_CAROLIEiJ_P0034714	842 (aa)	-	-
MGP_CAROLIEiJ_T0034717	-	2684	-	MGP_CAROLIEiJ_P0034717	699 (aa)	-	-
MGP_CAROLIEiJ_T0034716	-	1888	-	MGP_CAROLIEiJ_P0034716	582 (aa)	-	-
MGP_CAROLIEiJ_T0034719	-	2521	-	MGP_CAROLIEiJ_P0034719	684 (aa)	-	-
MGP_CAROLIEiJ_T0034718	-	1956	-	MGP_CAROLIEiJ_P0034718	191 (aa)	-	-
MGP_CAROLIEiJ_T0034720	-	1726	-	MGP_CAROLIEiJ_P0034720	574 (aa)	-	-
MGP_CAROLIEiJ_T0034721	-	761	-	MGP_CAROLIEiJ_P0034721	152 (aa)	-	-
MGP_CAROLIEiJ_T0034722	-	954	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0034723	-	2583	-	MGP_CAROLIEiJ_P0034723	592 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0018635's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018635's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0018635	-	82	30.353	MGP_CAROLIEiJ_G0033034	Smarca1	71	30.174
MGP_CAROLIEiJ_G0018635	-	85	30.066	MGP_CAROLIEiJ_G0025810	Rad54b	61	30.066
MGP_CAROLIEiJ_G0018635	-	78	32.163	MGP_CAROLIEiJ_G0025401	Chd1l	50	32.163

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018635	-	100	89.158	ENSG00000182150	ERCC6L2	100	96.341	Homo_sapiens
MGP_CAROLIEiJ_G0018635	-	100	85.420	ENSAMEG00000011657	ERCC6L2	100	85.854	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0018635	-	99	75.403	ENSAPLG00000006105	ERCC6L2	99	74.462	Anas_platyrhynchos
MGP_CAROLIEiJ_G0018635	-	100	75.585	ENSACAG00000012947	ERCC6L2	100	75.620	Anolis_carolinensis
MGP_CAROLIEiJ_G0018635	-	97	62.332	ENSACLG00000015088	ercc6l2	66	62.631	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0018635	-	100	88.571	ENSCJAG00000008862	ERCC6L2	98	88.571	Callithrix_jacchus
MGP_CAROLIEiJ_G0018635	-	99	87.701	ENSCAFG00000001219	ERCC6L2	81	81.867	Canis_familiaris
MGP_CAROLIEiJ_G0018635	-	100	88.889	ENSTSYG00000013871	ERCC6L2	99	87.857	Carlito_syrichta
MGP_CAROLIEiJ_G0018635	-	91	80.796	ENSCAPG00000009212	ERCC6L2	100	80.796	Cavia_aperea
MGP_CAROLIEiJ_G0018635	-	99	87.262	ENSCPOG00000004544	-	98	84.582	Cavia_porcellus
MGP_CAROLIEiJ_G0018635	-	100	88.445	ENSCCAG00000026980	ERCC6L2	98	88.445	Cebus_capucinus
MGP_CAROLIEiJ_G0018635	-	100	75.857	ENSCHOG00000006282	ERCC6L2	98	75.857	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0018635	-	99	79.063	ENSCPBG00000005414	ERCC6L2	56	64.294	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0018635	-	100	88.160	ENSCANG00000039934	ERCC6L2	98	88.160	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0018635	-	100	93.129	ENSCGRG00001022738	Ercc6l2	99	92.275	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018635	-	99	87.904	ENSCGRG00000015854	Ercc6l2	99	87.904	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018635	-	98	86.214	ENSDORG00000010788	Ercc6l2	99	86.871	Dipodomys_ordii
MGP_CAROLIEiJ_G0018635	-	99	84.064	ENSETEG00000010686	ERCC6L2	98	83.143	Echinops_telfairi
MGP_CAROLIEiJ_G0018635	-	84	90.323	ENSEEUG00000009341	ERCC6L2	99	69.615	Erinaceus_europaeus
MGP_CAROLIEiJ_G0018635	-	99	76.979	ENSFALG00000003400	ERCC6L2	64	76.488	Ficedula_albicollis
MGP_CAROLIEiJ_G0018635	-	99	87.719	ENSFDAG00000000805	ERCC6L2	99	86.695	Fukomys_damarensis
MGP_CAROLIEiJ_G0018635	-	94	63.199	ENSGMOG00000007751	ercc6l2	63	63.199	Gadus_morhua
MGP_CAROLIEiJ_G0018635	-	99	75.110	ENSGALG00000012621	ERCC6L2	56	62.366	Gallus_gallus
MGP_CAROLIEiJ_G0018635	-	89	68.026	ENSGACG00000006992	ercc6l2	67	58.379	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0018635	-	99	79.795	ENSGAGG00000021675	ERCC6L2	51	66.708	Gopherus_agassizii
MGP_CAROLIEiJ_G0018635	-	100	88.730	ENSGGOG00000002705	ERCC6L2	98	88.730	Gorilla_gorilla
MGP_CAROLIEiJ_G0018635	-	80	94.915	ENSHGLG00000009488	ERCC6L2	95	93.370	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0018635	-	100	87.445	ENSJJAG00000018150	Ercc6l2	100	86.733	Jaculus_jaculus
MGP_CAROLIEiJ_G0018635	-	99	73.285	ENSLACG00000011767	ERCC6L2	54	62.235	Latimeria_chalumnae
MGP_CAROLIEiJ_G0018635	-	100	86.880	ENSLAFG00000013092	ERCC6L2	100	86.060	Loxodonta_africana
MGP_CAROLIEiJ_G0018635	-	100	87.732	ENSMNEG00000035630	ERCC6L2	98	87.732	Macaca_nemestrina
MGP_CAROLIEiJ_G0018635	-	100	88.017	ENSMLEG00000019530	ERCC6L2	98	88.017	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0018635	-	99	93.997	ENSMAUG00000004820	-	100	88.636	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018635	-	100	89.586	ENSMICG00000029160	ERCC6L2	98	89.586	Microcebus_murinus
MGP_CAROLIEiJ_G0018635	-	100	93.148	ENSMOCG00000019362	-	100	93.148	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018635	-	99	61.272	ENSMMOG00000001419	ercc6l2	59	61.272	Mola_mola
MGP_CAROLIEiJ_G0018635	-	99	63.411	ENSMALG00000016933	ercc6l2	60	67.308	Monopterus_albus
MGP_CAROLIEiJ_G0018635	-	100	98.856	ENSMUSG00000021470	Ercc6l2	100	98.856	Mus_musculus
MGP_CAROLIEiJ_G0018635	-	100	98.392	MGP_PahariEiJ_G0019699	-	100	98.392	Mus_pahari
MGP_CAROLIEiJ_G0018635	-	100	99.428	MGP_SPRETEiJ_G0019515	-	100	99.428	Mus_spretus
MGP_CAROLIEiJ_G0018635	-	94	87.383	ENSMPUG00000006738	ERCC6L2	80	81.880	Mustela_putorius_furo
MGP_CAROLIEiJ_G0018635	-	100	85.043	ENSMLUG00000000845	ERCC6L2	98	85.043	Myotis_lucifugus
MGP_CAROLIEiJ_G0018635	-	100	89.857	ENSNGAG00000016174	Ercc6l2	99	89.857	Nannospalax_galili
MGP_CAROLIEiJ_G0018635	-	100	88.730	ENSNLEG00000016784	ERCC6L2	98	88.730	Nomascus_leucogenys
MGP_CAROLIEiJ_G0018635	-	92	88.112	ENSOPRG00000011647	ERCC6L2	100	88.264	Ochotona_princeps
MGP_CAROLIEiJ_G0018635	-	99	87.848	ENSODEG00000016588	ERCC6L2	98	89.252	Octodon_degus
MGP_CAROLIEiJ_G0018635	-	99	60.951	ENSONIG00000015139	ercc6l2	100	60.169	Oreochromis_niloticus
MGP_CAROLIEiJ_G0018635	-	100	89.650	ENSOCUG00000000442	-	100	88.302	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0018635	-	99	62.811	ENSORLG00000004287	ercc6l2	70	56.649	Oryzias_latipes
MGP_CAROLIEiJ_G0018635	-	89	67.974	ENSORLG00020002133	ercc6l2	54	56.250	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0018635	-	89	68.137	ENSORLG00015010250	ercc6l2	71	56.110	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0018635	-	89	67.320	ENSOMEG00000021983	ercc6l2	54	56.005	Oryzias_melastigma
MGP_CAROLIEiJ_G0018635	-	91	91.355	ENSOGAG00000003146	ERCC6L2	66	91.489	Otolemur_garnettii
MGP_CAROLIEiJ_G0018635	-	99	90.029	ENSOARG00000008546	ERCC6L2	85	79.073	Ovis_aries
MGP_CAROLIEiJ_G0018635	-	100	89.158	ENSPPAG00000035061	ERCC6L2	98	89.158	Pan_paniscus
MGP_CAROLIEiJ_G0018635	-	100	87.286	ENSPPRG00000019238	ERCC6L2	98	87.286	Panthera_pardus
MGP_CAROLIEiJ_G0018635	-	100	86.857	ENSPTIG00000009148	ERCC6L2	98	86.857	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0018635	-	100	89.016	ENSPTRG00000048689	ERCC6L2	98	89.016	Pan_troglodytes
MGP_CAROLIEiJ_G0018635	-	91	64.252	ENSPKIG00000016799	ercc6l2	51	59.496	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0018635	-	100	79.678	ENSPSIG00000010627	ERCC6L2	100	79.708	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0018635	-	83	65.116	ENSPMGG00000016547	ercc6l2	63	56.596	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0018635	-	99	92.679	ENSPEMG00000006631	-	100	88.493	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0018635	-	99	81.433	ENSPCIG00000020095	-	72	70.188	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0018635	-	99	89.312	ENSPPYG00000019412	-	57	78.429	Pongo_abelii
MGP_CAROLIEiJ_G0018635	-	100	85.673	ENSPCOG00000026714	ERCC6L2	98	85.143	Propithecus_coquereli
MGP_CAROLIEiJ_G0018635	-	92	88.345	ENSPVAG00000003926	ERCC6L2	98	80.029	Pteropus_vampyrus
MGP_CAROLIEiJ_G0018635	-	89	66.232	ENSPNYG00000015347	ercc6l2	58	66.558	Pundamilia_nyererei
MGP_CAROLIEiJ_G0018635	-	99	96.047	ENSRNOG00000019175	Ercc6l2	55	93.230	Rattus_norvegicus
MGP_CAROLIEiJ_G0018635	-	100	84.571	ENSRBIG00000018434	ERCC6L2	98	84.571	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0018635	-	100	88.017	ENSRROG00000029000	ERCC6L2	98	88.017	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0018635	-	82	78.811	ENSSHAG00000000781	-	100	78.811	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0018635	-	99	62.014	ENSSLDG00000018663	ercc6l2	61	63.404	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0018635	-	99	76.574	ENSSPUG00000004336	ERCC6L2	54	74.925	Sphenodon_punctatus
MGP_CAROLIEiJ_G0018635	-	99	60.489	ENSSPAG00000004484	ercc6l2	60	60.632	Stegastes_partitus
MGP_CAROLIEiJ_G0018635	-	99	76.393	ENSTGUG00000000524	ERCC6L2	100	76.316	Taeniopygia_guttata
MGP_CAROLIEiJ_G0018635	-	99	59.452	ENSTRUG00000014634	ercc6l2	64	59.452	Takifugu_rubripes
MGP_CAROLIEiJ_G0018635	-	82	87.824	ENSTBEG00000014213	ERCC6L2	87	94.231	Tupaia_belangeri
MGP_CAROLIEiJ_G0018635	-	100	82.454	ENSTTRG00000005372	ERCC6L2	98	82.454	Tursiops_truncatus
MGP_CAROLIEiJ_G0018635	-	97	87.654	ENSVPAG00000004701	ERCC6L2	99	88.766	Vicugna_pacos
MGP_CAROLIEiJ_G0018635	-	99	71.870	ENSXETG00000014835	ercc6l2	63	71.870	Xenopus_tropicalis