EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018660 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 20076 bases
Position: chr13:62404744-62424819
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	1	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	2	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	3	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	4	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	5	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	6	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	7	8
MGP_CAROLIEiJ_P0034771	zf-C2H2	PF00096.26	2.2e-44	8	8
MGP_CAROLIEiJ_P0034771	zf-met	PF12874.7	3.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0034773	-	4570	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0034771	-	2932	-	MGP_CAROLIEiJ_P0034771	444 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0018660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018660's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0018660	-	65	44.094	MGP_CAROLIEiJ_G0014667	Zbtb41	50	44.094
MGP_CAROLIEiJ_G0018660	-	68	47.059	MGP_CAROLIEiJ_G0027508	Gfi1	100	47.059
MGP_CAROLIEiJ_G0018660	-	78	46.667	MGP_CAROLIEiJ_G0029427	-	99	47.170
MGP_CAROLIEiJ_G0018660	-	76	40.385	MGP_CAROLIEiJ_G0030502	-	92	40.385
MGP_CAROLIEiJ_G0018660	-	76	40.385	MGP_CAROLIEiJ_G0030501	Zfp764	92	40.385
MGP_CAROLIEiJ_G0018660	-	65	45.968	MGP_CAROLIEiJ_G0016391	Zfp672	98	48.718
MGP_CAROLIEiJ_G0018660	-	68	45.105	MGP_CAROLIEiJ_G0018274	Zkscan4	60	45.105
MGP_CAROLIEiJ_G0018660	-	76	50.376	MGP_CAROLIEiJ_G0018661	Zfp759	99	52.490
MGP_CAROLIEiJ_G0018660	-	62	35.326	MGP_CAROLIEiJ_G0029144	-	66	34.715
MGP_CAROLIEiJ_G0018660	-	67	43.617	MGP_CAROLIEiJ_G0022445	Zfp236	58	41.129
MGP_CAROLIEiJ_G0018660	-	62	41.026	MGP_CAROLIEiJ_G0029143	-	78	37.500
MGP_CAROLIEiJ_G0018660	-	66	45.679	MGP_CAROLIEiJ_G0029146	Zfp784	66	45.679
MGP_CAROLIEiJ_G0018660	-	70	49.351	MGP_CAROLIEiJ_G0021132	Zfp948	97	49.351
MGP_CAROLIEiJ_G0018660	-	76	48.462	MGP_CAROLIEiJ_G0021128	Zfp51	94	48.462
MGP_CAROLIEiJ_G0018660	-	60	49.296	MGP_CAROLIEiJ_G0026744	Zbtb17	56	41.532
MGP_CAROLIEiJ_G0018660	-	67	54.795	MGP_CAROLIEiJ_G0029490	Zfp420	98	54.795
MGP_CAROLIEiJ_G0018660	-	60	47.644	MGP_CAROLIEiJ_G0029135	Zfp628	60	46.500
MGP_CAROLIEiJ_G0018660	-	76	55.682	MGP_CAROLIEiJ_G0029329	Zfp94	97	55.682
MGP_CAROLIEiJ_G0018660	-	76	55.588	MGP_CAROLIEiJ_G0018683	Zfp493	99	55.588
MGP_CAROLIEiJ_G0018660	-	71	42.012	MGP_CAROLIEiJ_G0028343	Repin1	95	42.012
MGP_CAROLIEiJ_G0018660	-	66	55.932	MGP_CAROLIEiJ_G0029324	Zfp111	78	55.932
MGP_CAROLIEiJ_G0018660	-	75	59.322	MGP_CAROLIEiJ_G0029612	Zfp141	64	59.322
MGP_CAROLIEiJ_G0018660	-	76	50.746	MGP_CAROLIEiJ_G0029321	Zfp112	67	50.746
MGP_CAROLIEiJ_G0018660	-	61	55.862	MGP_CAROLIEiJ_G0029322	Zfp235	72	55.862
MGP_CAROLIEiJ_G0018660	-	77	46.957	MGP_CAROLIEiJ_G0016437	Zfp867	97	46.957
MGP_CAROLIEiJ_G0018660	-	76	53.600	MGP_CAROLIEiJ_G0019949	Zfp251	94	53.600
MGP_CAROLIEiJ_G0018660	-	62	54.861	MGP_CAROLIEiJ_G0029327	Zfp93	75	54.861
MGP_CAROLIEiJ_G0018660	-	77	53.216	MGP_CAROLIEiJ_G0029326	Zfp108	78	53.216
MGP_CAROLIEiJ_G0018660	-	77	46.460	MGP_CAROLIEiJ_G0031203	Zfp882	99	46.460
MGP_CAROLIEiJ_G0018660	-	68	40.816	MGP_CAROLIEiJ_G0028463	Prdm5	84	40.816
MGP_CAROLIEiJ_G0018660	-	60	45.408	MGP_CAROLIEiJ_G0027176	Zbtb49	64	49.315
MGP_CAROLIEiJ_G0018660	-	76	54.751	MGP_CAROLIEiJ_G0024261	Zfp661	95	54.751
MGP_CAROLIEiJ_G0018660	-	67	33.553	MGP_CAROLIEiJ_G0029356	Zfp574	83	45.968
MGP_CAROLIEiJ_G0018660	-	77	53.081	MGP_CAROLIEiJ_G0015655	-	94	53.081
MGP_CAROLIEiJ_G0018660	-	78	46.715	MGP_CAROLIEiJ_G0016306	Zfp354a	100	46.715
MGP_CAROLIEiJ_G0018660	-	76	43.144	MGP_CAROLIEiJ_G0031579	Zfp1	98	43.144
MGP_CAROLIEiJ_G0018660	-	61	38.525	MGP_CAROLIEiJ_G0031420	Zfp319	92	38.525
MGP_CAROLIEiJ_G0018660	-	60	45.957	MGP_CAROLIEiJ_G0030498	Zfp768	55	45.882
MGP_CAROLIEiJ_G0018660	-	76	46.899	MGP_CAROLIEiJ_G0029614	Zfp715	64	56.818
MGP_CAROLIEiJ_G0018660	-	76	33.071	MGP_CAROLIEiJ_G0020389	Zfp597	96	33.071
MGP_CAROLIEiJ_G0018660	-	60	36.937	MGP_CAROLIEiJ_G0024724	Zfp64	73	34.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018660	-	61	53.191	ENSAOCG00000013672	-	94	52.551	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0018660	-	67	47.619	ENSACLG00000008821	-	95	47.619	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0018660	-	63	46.119	ENSAMXG00000036633	-	62	50.299	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018660	-	61	47.500	ENSAMXG00000036241	-	82	47.500	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018660	-	66	47.755	ENSAMXG00000040677	-	84	47.755	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018660	-	66	49.383	ENSAMXG00000037981	-	79	49.383	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018660	-	66	50.739	ENSAMXG00000043423	-	78	50.739	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018660	-	75	50.885	ENSTSYG00000006246	-	99	50.885	Carlito_syrichta
MGP_CAROLIEiJ_G0018660	-	79	80.423	ENSCGRG00001012803	-	97	77.600	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018660	-	67	48.026	ENSCGRG00001019143	-	93	47.222	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018660	-	76	53.097	ENSCGRG00001024303	-	99	53.097	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018660	-	79	80.423	ENSCGRG00000009742	-	97	77.600	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018660	-	70	53.793	ENSCGRG00000008531	-	98	51.556	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018660	-	66	47.000	ENSEBUG00000017017	-	67	44.889	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	64	46.256	ENSEBUG00000001121	-	81	46.256	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	66	47.009	ENSEBUG00000003236	-	93	45.968	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	71	45.852	ENSEBUG00000007375	-	84	45.852	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	65	53.125	ENSEBUG00000015834	-	84	53.125	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	77	47.234	ENSEBUG00000003590	-	82	47.234	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	63	43.379	ENSEBUG00000015993	-	66	43.379	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018660	-	66	48.744	ENSIPUG00000013315	-	93	48.744	Ictalurus_punctatus
MGP_CAROLIEiJ_G0018660	-	77	74.185	ENSMAUG00000005691	-	89	72.853	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018660	-	76	52.451	ENSMAUG00000016437	-	100	50.885	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018660	-	76	85.799	ENSMOCG00000000365	-	93	85.799	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018660	-	76	56.897	ENSMUSG00000091474	2610021A01Rik	70	56.897	Mus_musculus
MGP_CAROLIEiJ_G0018660	-	100	87.076	ENSMUSG00000074824	Rslcan18	100	71.610	Mus_musculus
MGP_CAROLIEiJ_G0018660	-	75	55.932	MGP_PahariEiJ_G0012839	-	71	55.932	Mus_pahari
MGP_CAROLIEiJ_G0018660	-	100	93.243	MGP_SPRETEiJ_G0019543	-	100	93.243	Mus_spretus
MGP_CAROLIEiJ_G0018660	-	63	42.778	ENSPMAG00000000404	-	99	42.778	Petromyzon_marinus
MGP_CAROLIEiJ_G0018660	-	64	49.407	ENSPNAG00000003017	-	88	49.407	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0018660	-	69	51.293	ENSPNAG00000014492	-	89	51.293	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0018660	-	76	57.047	ENSSSCG00000040389	-	98	57.047	Sus_scrofa
MGP_CAROLIEiJ_G0018660	-	73	45.806	ENSTRUG00000014476	-	91	45.806	Takifugu_rubripes