EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018829 (Gene tree)
Gene ID: 110308010
Gene Symbol: Ptcd2
Alias: 1190005P08Rik
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 24519 bases
Position: chr13:92962161-92986679
Accession: 110308010
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0035257	MRP-S27	PF10037.9	3.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0035257	-	1669	XM_021180334	MGP_CAROLIEiJ_P0035257	381 (aa)	XP_021035993	UPI000A31557F

Gene Model

Click here to download MGP_CAROLIEiJ_G0018829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018829's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018829	Ptcd2	100	74.151	ENSG00000049883	PTCD2	100	75.369	Homo_sapiens
MGP_CAROLIEiJ_G0018829	Ptcd2	96	45.879	ENSAPOG00000020682	ptcd2	93	45.879	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.279	ENSAMEG00000007194	PTCD2	99	71.279	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0018829	Ptcd2	91	42.120	ENSACIG00000002053	ptcd2	100	42.120	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0018829	Ptcd2	91	45.690	ENSAOCG00000006616	ptcd2	89	45.690	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0018829	Ptcd2	91	46.132	ENSAPEG00000022926	ptcd2	89	46.132	Amphiprion_percula
MGP_CAROLIEiJ_G0018829	Ptcd2	93	57.062	ENSACAG00000009747	PTCD2	91	57.062	Anolis_carolinensis
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.585	ENSANAG00000029353	PTCD2	99	72.585	Aotus_nancymaae
MGP_CAROLIEiJ_G0018829	Ptcd2	91	44.828	ENSACLG00000027742	ptcd2	89	44.828	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0018829	Ptcd2	86	46.951	ENSAMXG00000029404	ptcd2	88	46.951	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.354	ENSBTAG00000014675	PTCD2	100	71.354	Bos_taurus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.802	ENSCJAG00000016364	PTCD2	99	71.802	Callithrix_jacchus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.018	ENSCAFG00000007982	PTCD2	90	71.018	Canis_familiaris
MGP_CAROLIEiJ_G0018829	Ptcd2	91	72.254	ENSCAFG00020019147	PTCD2	97	72.254	Canis_lupus_dingo
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.656	ENSCHIG00000017118	PTCD2	100	72.656	Capra_hircus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	69.452	ENSCPOG00000040168	PTCD2	100	69.452	Cavia_porcellus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.540	ENSCCAG00000029389	-	99	71.540	Cebus_capucinus
MGP_CAROLIEiJ_G0018829	Ptcd2	79	69.103	ENSCCAG00000021996	-	93	69.103	Cebus_capucinus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.368	ENSCATG00000019069	PTCD2	100	73.368	Cercocebus_atys
MGP_CAROLIEiJ_G0018829	Ptcd2	96	73.842	ENSCLAG00000000072	PTCD2	96	73.842	Chinchilla_lanigera
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.107	ENSCSAG00000015623	PTCD2	100	73.107	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0018829	Ptcd2	74	71.765	ENSCHOG00000010634	PTCD2	82	71.765	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0018829	Ptcd2	98	52.957	ENSCPBG00000000216	PTCD2	95	52.957	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.802	ENSCANG00000035636	PTCD2	99	71.802	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	80.840	ENSCGRG00001015289	Ptcd2	84	80.840	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018829	Ptcd2	100	80.840	ENSCGRG00000006193	Ptcd2	84	80.840	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018829	Ptcd2	91	43.678	ENSCVAG00000001285	ptcd2	89	43.678	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0018829	Ptcd2	93	46.629	ENSDARG00000035391	ptcd2	93	46.629	Danio_rerio
MGP_CAROLIEiJ_G0018829	Ptcd2	100	69.713	ENSDNOG00000008719	PTCD2	100	69.713	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.868	ENSDORG00000004921	Ptcd2	100	72.868	Dipodomys_ordii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	63.802	ENSETEG00000016542	PTCD2	99	63.802	Echinops_telfairi
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.990	ENSEASG00005018038	PTCD2	100	71.990	Equus_asinus_asinus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.990	ENSECAG00000007022	PTCD2	98	71.990	Equus_caballus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	65.535	ENSEEUG00000014031	PTCD2	99	65.535	Erinaceus_europaeus
MGP_CAROLIEiJ_G0018829	Ptcd2	93	49.153	ENSELUG00000003584	ptcd2	92	49.153	Esox_lucius
MGP_CAROLIEiJ_G0018829	Ptcd2	96	67.397	ENSFCAG00000045432	PTCD2	78	67.397	Felis_catus
MGP_CAROLIEiJ_G0018829	Ptcd2	86	49.847	ENSFALG00000010299	PTCD2	99	49.847	Ficedula_albicollis
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.540	ENSFDAG00000018461	PTCD2	100	71.540	Fukomys_damarensis
MGP_CAROLIEiJ_G0018829	Ptcd2	92	49.432	ENSGMOG00000003637	ptcd2	91	49.432	Gadus_morhua
MGP_CAROLIEiJ_G0018829	Ptcd2	93	48.023	ENSGALG00000038260	PTCD2	100	46.597	Gallus_gallus
MGP_CAROLIEiJ_G0018829	Ptcd2	97	55.764	ENSGAGG00000021952	PTCD2	96	55.764	Gopherus_agassizii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.890	ENSGGOG00000010695	PTCD2	99	73.890	Gorilla_gorilla
MGP_CAROLIEiJ_G0018829	Ptcd2	91	45.115	ENSHBUG00000009191	ptcd2	89	45.115	Haplochromis_burtoni
MGP_CAROLIEiJ_G0018829	Ptcd2	100	69.713	ENSHGLG00000001234	PTCD2	100	69.713	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0018829	Ptcd2	100	69.713	ENSHGLG00100015419	PTCD2	100	69.713	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0018829	Ptcd2	95	46.978	ENSHCOG00000001703	ptcd2	92	46.978	Hippocampus_comes
MGP_CAROLIEiJ_G0018829	Ptcd2	88	45.970	ENSIPUG00000006080	ptcd2	91	46.132	Ictalurus_punctatus
MGP_CAROLIEiJ_G0018829	Ptcd2	99	74.016	ENSSTOG00000006596	PTCD2	99	74.016	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.629	ENSJJAG00000024388	Ptcd2	100	73.629	Jaculus_jaculus
MGP_CAROLIEiJ_G0018829	Ptcd2	93	42.655	ENSKMAG00000009329	ptcd2	92	42.655	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0018829	Ptcd2	97	44.504	ENSLBEG00000024871	ptcd2	94	44.504	Labrus_bergylta
MGP_CAROLIEiJ_G0018829	Ptcd2	100	51.832	ENSLOCG00000011122	ptcd2	99	51.832	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0018829	Ptcd2	81	72.347	ENSLAFG00000004115	PTCD2	100	72.347	Loxodonta_africana
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.107	ENSMFAG00000031516	PTCD2	99	73.107	Macaca_fascicularis
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.107	ENSMNEG00000007537	PTCD2	100	73.107	Macaca_nemestrina
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.629	ENSMLEG00000031093	PTCD2	99	73.629	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0018829	Ptcd2	96	46.301	ENSMAMG00000018529	ptcd2	94	46.301	Mastacembelus_armatus
MGP_CAROLIEiJ_G0018829	Ptcd2	91	44.828	ENSMZEG00005003625	ptcd2	89	44.828	Maylandia_zebra
MGP_CAROLIEiJ_G0018829	Ptcd2	91	48.276	ENSMGAG00000005033	PTCD2	100	48.276	Meleagris_gallopavo
MGP_CAROLIEiJ_G0018829	Ptcd2	100	65.092	ENSMAUG00000020253	Ptcd2	100	65.092	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.846	ENSMICG00000004535	PTCD2	99	72.846	Microcebus_murinus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	82.940	ENSMOCG00000019985	Ptcd2	100	82.940	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018829	Ptcd2	100	54.145	ENSMODG00000001695	PTCD2	100	54.145	Monodelphis_domestica
MGP_CAROLIEiJ_G0018829	Ptcd2	91	47.414	ENSMALG00000022372	ptcd2	91	47.414	Monopterus_albus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	97.375	ENSMUSG00000021650	Ptcd2	100	97.375	Mus_musculus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	93.963	MGP_PahariEiJ_G0015904	Ptcd2	100	93.963	Mus_pahari
MGP_CAROLIEiJ_G0018829	Ptcd2	100	96.850	MGP_SPRETEiJ_G0019711	Ptcd2	100	96.850	Mus_spretus
MGP_CAROLIEiJ_G0018829	Ptcd2	97	73.585	ENSMPUG00000014401	PTCD2	97	73.585	Mustela_putorius_furo
MGP_CAROLIEiJ_G0018829	Ptcd2	100	70.496	ENSMLUG00000007374	PTCD2	99	70.496	Myotis_lucifugus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	76.240	ENSNGAG00000005027	Ptcd2	100	76.240	Nannospalax_galili
MGP_CAROLIEiJ_G0018829	Ptcd2	91	45.115	ENSNBRG00000008174	ptcd2	91	45.115	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0018829	Ptcd2	87	44.242	ENSNBRG00000000092	-	100	44.242	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.585	ENSNLEG00000004516	PTCD2	99	72.585	Nomascus_leucogenys
MGP_CAROLIEiJ_G0018829	Ptcd2	82	49.682	ENSMEUG00000014012	-	82	49.682	Notamacropus_eugenii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	70.496	ENSOPRG00000007290	PTCD2	99	70.496	Ochotona_princeps
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.656	ENSODEG00000016417	PTCD2	100	72.656	Octodon_degus
MGP_CAROLIEiJ_G0018829	Ptcd2	76	46.875	ENSONIG00000011269	ptcd2	84	46.875	Oreochromis_niloticus
MGP_CAROLIEiJ_G0018829	Ptcd2	96	73.699	ENSOCUG00000007970	PTCD2	100	72.846	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0018829	Ptcd2	96	45.504	ENSORLG00000003851	ptcd2	92	45.504	Oryzias_latipes
MGP_CAROLIEiJ_G0018829	Ptcd2	96	44.687	ENSORLG00020009823	ptcd2	94	44.687	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0018829	Ptcd2	92	46.000	ENSORLG00015016777	ptcd2	99	46.000	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0018829	Ptcd2	94	43.056	ENSOMEG00000012396	ptcd2	86	43.056	Oryzias_melastigma
MGP_CAROLIEiJ_G0018829	Ptcd2	100	70.757	ENSOGAG00000008390	PTCD2	99	70.757	Otolemur_garnettii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.875	ENSOARG00000005087	PTCD2	99	71.875	Ovis_aries
MGP_CAROLIEiJ_G0018829	Ptcd2	100	73.890	ENSPPAG00000028480	PTCD2	99	73.890	Pan_paniscus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	74.151	ENSPTRG00000016968	PTCD2	99	74.151	Pan_troglodytes
MGP_CAROLIEiJ_G0018829	Ptcd2	91	75.652	ENSPANG00000006611	PTCD2	89	75.652	Papio_anubis
MGP_CAROLIEiJ_G0018829	Ptcd2	93	47.899	ENSPKIG00000019896	ptcd2	93	47.899	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0018829	Ptcd2	83	57.278	ENSPSIG00000014559	PTCD2	98	57.278	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0018829	Ptcd2	100	80.157	ENSPEMG00000000884	Ptcd2	100	80.157	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0018829	Ptcd2	100	56.250	ENSPCIG00000029047	PTCD2	100	56.250	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0018829	Ptcd2	91	44.253	ENSPLAG00000010456	ptcd2	91	44.253	Poecilia_latipinna
MGP_CAROLIEiJ_G0018829	Ptcd2	91	44.253	ENSPREG00000021797	ptcd2	88	44.253	Poecilia_reticulata
MGP_CAROLIEiJ_G0018829	Ptcd2	100	63.969	ENSPPYG00000015543	PTCD2	99	63.969	Pongo_abelii
MGP_CAROLIEiJ_G0018829	Ptcd2	78	62.667	ENSPCAG00000006806	PTCD2	96	62.667	Procavia_capensis
MGP_CAROLIEiJ_G0018829	Ptcd2	100	67.624	ENSPVAG00000010935	PTCD2	99	67.624	Pteropus_vampyrus
MGP_CAROLIEiJ_G0018829	Ptcd2	91	44.828	ENSPNYG00000003122	ptcd2	89	44.828	Pundamilia_nyererei
MGP_CAROLIEiJ_G0018829	Ptcd2	93	48.324	ENSPNAG00000021490	ptcd2	93	48.603	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0018829	Ptcd2	100	87.664	ENSRNOG00000028403	Ptcd2	100	87.664	Rattus_norvegicus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	68.668	ENSRBIG00000032929	PTCD2	99	68.668	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.846	ENSRROG00000000080	PTCD2	100	72.846	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0018829	Ptcd2	100	72.021	ENSSBOG00000018911	PTCD2	100	72.021	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0018829	Ptcd2	97	56.640	ENSSHAG00000003833	PTCD2	95	56.640	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0018829	Ptcd2	92	44.286	ENSSFOG00015015415	ptcd2	91	44.286	Scleropages_formosus
MGP_CAROLIEiJ_G0018829	Ptcd2	92	44.000	ENSSMAG00000010350	ptcd2	91	44.000	Scophthalmus_maximus
MGP_CAROLIEiJ_G0018829	Ptcd2	96	47.527	ENSSDUG00000008142	ptcd2	89	47.527	Seriola_dumerili
MGP_CAROLIEiJ_G0018829	Ptcd2	96	46.978	ENSSLDG00000015284	ptcd2	93	46.978	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0018829	Ptcd2	81	63.430	ENSSARG00000004983	PTCD2	99	63.430	Sorex_araneus
MGP_CAROLIEiJ_G0018829	Ptcd2	93	51.124	ENSSPUG00000000176	PTCD2	90	51.124	Sphenodon_punctatus
MGP_CAROLIEiJ_G0018829	Ptcd2	91	46.839	ENSSPAG00000008591	ptcd2	89	46.839	Stegastes_partitus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.916	ENSSSCG00000016975	PTCD2	90	71.916	Sus_scrofa
MGP_CAROLIEiJ_G0018829	Ptcd2	91	49.565	ENSTGUG00000005705	PTCD2	99	49.565	Taeniopygia_guttata
MGP_CAROLIEiJ_G0018829	Ptcd2	100	69.713	ENSTBEG00000016559	PTCD2	99	69.713	Tupaia_belangeri
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.354	ENSTTRG00000011851	PTCD2	99	71.354	Tursiops_truncatus
MGP_CAROLIEiJ_G0018829	Ptcd2	97	72.237	ENSUAMG00000007583	PTCD2	87	72.237	Ursus_americanus
MGP_CAROLIEiJ_G0018829	Ptcd2	97	71.968	ENSUMAG00000007666	PTCD2	97	71.968	Ursus_maritimus
MGP_CAROLIEiJ_G0018829	Ptcd2	100	70.833	ENSVPAG00000009597	PTCD2	99	70.833	Vicugna_pacos
MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.540	ENSVVUG00000007299	-	100	71.540	Vulpes_vulpes
MGP_CAROLIEiJ_G0018829	Ptcd2	94	55.153	ENSXETG00000031652	PTCD2	94	55.153	Xenopus_tropicalis
MGP_CAROLIEiJ_G0018829	Ptcd2	91	43.966	ENSXMAG00000005940	ptcd2	82	43.966	Xiphophorus_maculatus