EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0019341 (Gene tree)
Gene ID
110309124
Gene Symbol
Pspc1
Alias
5730470C09Rik|PSP1
Full Name
paraspeckle component 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
56362 bases
Position
chr14:47969437-48025798
Accession
110309124
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0036938RRM_1PF00076.223.4e-3212
MGP_CAROLIEiJ_P0036938RRM_1PF00076.223.4e-3222
MGP_CAROLIEiJ_P0036937RRM_1PF00076.224.8e-3212
MGP_CAROLIEiJ_P0036937RRM_1PF00076.224.8e-3222
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0036937-2385-MGP_CAROLIEiJ_P0036937523 (aa)XP_021037212UPI000A314CF3
MGP_CAROLIEiJ_T0036940-601-MGP_CAROLIEiJ_P003694058 (aa)--
MGP_CAROLIEiJ_T0036939-509--- (aa)--
MGP_CAROLIEiJ_T0036938-2844-MGP_CAROLIEiJ_P0036938466 (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0019341's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0019341's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_CAROLIEiJ_G0019341Pspc19336.066MGP_CAROLIEiJ_G0022516-7733.036
MGP_CAROLIEiJ_G0019341Pspc16941.304MGP_CAROLIEiJ_G0015568Cirbp6834.247
MGP_CAROLIEiJ_G0019341Pspc18471.429MGP_CAROLIEiJ_G0026487Sfpq5466.062
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSG00000121390PSPC110097.328Homo_sapiens
MGP_CAROLIEiJ_G0019341Pspc18975.000ENSAPOG00000015946pspc18172.477Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0019341Pspc110096.947ENSAMEG00000017420PSPC110096.947Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0019341Pspc19959.149ENSACIG00000018695pspc18758.898Amphilophus_citrinellus
MGP_CAROLIEiJ_G0019341Pspc18974.519ENSAOCG00000005279pspc18172.018Amphiprion_ocellaris
MGP_CAROLIEiJ_G0019341Pspc18974.519ENSAPEG00000015927pspc18172.018Amphiprion_percula
MGP_CAROLIEiJ_G0019341Pspc18469.388ENSATEG00000004878pspc18657.325Anabas_testudineus
MGP_CAROLIEiJ_G0019341Pspc17793.317ENSAPLG00000006246PSPC110093.317Anas_platyrhynchos
MGP_CAROLIEiJ_G0019341Pspc18473.469ENSAPLG00000003643SFPQ6969.126Anas_platyrhynchos
MGP_CAROLIEiJ_G0019341Pspc18471.429ENSACAG00000013307-5665.027Anolis_carolinensis
MGP_CAROLIEiJ_G0019341Pspc19886.638ENSACAG00000002093PSPC19985.143Anolis_carolinensis
MGP_CAROLIEiJ_G0019341Pspc110097.519ENSANAG00000000059PSPC110097.519Aotus_nancymaae
MGP_CAROLIEiJ_G0019341Pspc19955.765ENSACLG00000027220pspc110053.761Astatotilapia_calliptera
MGP_CAROLIEiJ_G0019341Pspc19968.565ENSAMXG00000036881pspc18868.293Astyanax_mexicanus
MGP_CAROLIEiJ_G0019341Pspc110094.847ENSBTAG00000003934PSPC110094.275Bos_taurus
MGP_CAROLIEiJ_G0019341Pspc110097.519ENSCJAG00000004554PSPC110097.519Callithrix_jacchus
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSCAFG00020002009PSPC110097.137Canis_lupus_dingo
MGP_CAROLIEiJ_G0019341Pspc110094.847ENSCHIG00000016708PSPC110094.275Capra_hircus
MGP_CAROLIEiJ_G0019341Pspc18087.470ENSTSYG00000032882PSPC19384.834Carlito_syrichta
MGP_CAROLIEiJ_G0019341Pspc19996.328ENSCPOG00000000395PSPC110094.656Cavia_porcellus
MGP_CAROLIEiJ_G0019341Pspc110097.519ENSCCAG00000033498PSPC110097.519Cebus_capucinus
MGP_CAROLIEiJ_G0019341Pspc110096.947ENSCATG00000036434PSPC110096.947Cercocebus_atys
MGP_CAROLIEiJ_G0019341Pspc18986.910ENSCLAG00000005241PSPC110086.910Chinchilla_lanigera
MGP_CAROLIEiJ_G0019341Pspc110090.649ENSCHOG00000008913PSPC110090.458Choloepus_hoffmanni
MGP_CAROLIEiJ_G0019341Pspc19987.048ENSCPBG00000020859PSPC19987.259Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0019341Pspc19158.491ENSCSAVG00000003533-6455.882Ciona_savignyi
MGP_CAROLIEiJ_G0019341Pspc17884.729ENSCANG00000018948PSPC18799.620Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0019341Pspc110098.662ENSCGRG00001018368Pspc110098.662Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0019341Pspc110098.662ENSCGRG00000011724Pspc110098.662Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0019341Pspc18163.830ENSCSEG00000008899-6565.354Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0019341Pspc18569.697ENSCVAG00000007679-8167.442Cyprinodon_variegatus
MGP_CAROLIEiJ_G0019341Pspc19968.230ENSDARG00000006621pspc110066.988Danio_rerio
MGP_CAROLIEiJ_G0019341Pspc110095.992ENSDNOG00000011078PSPC110096.183Dasypus_novemcinctus
MGP_CAROLIEiJ_G0019341Pspc110094.275ENSDORG00000016050Pspc110094.275Dipodomys_ordii
MGP_CAROLIEiJ_G0019341Pspc155100.000ENSETEG00000000502-72100.000Echinops_telfairi
MGP_CAROLIEiJ_G0019341Pspc18444.898ENSEBUG00000010133pspc17848.822Eptatretus_burgeri
MGP_CAROLIEiJ_G0019341Pspc18664.428ENSEBUG00000003964-6272.254Eptatretus_burgeri
MGP_CAROLIEiJ_G0019341Pspc110096.750ENSEASG00005000119PSPC110096.750Equus_asinus_asinus
MGP_CAROLIEiJ_G0019341Pspc110096.750ENSECAG00000017286PSPC110096.750Equus_caballus
MGP_CAROLIEiJ_G0019341Pspc18489.796ENSEEUG00000011288-8881.988Erinaceus_europaeus
MGP_CAROLIEiJ_G0019341Pspc19968.499ENSELUG00000003746pspc19472.010Esox_lucius
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSFCAG00000027841PSPC110097.137Felis_catus
MGP_CAROLIEiJ_G0019341Pspc19987.763ENSFALG00000008750PSPC19987.763Ficedula_albicollis
MGP_CAROLIEiJ_G0019341Pspc110093.499ENSFDAG00000002617PSPC110093.499Fukomys_damarensis
MGP_CAROLIEiJ_G0019341Pspc18477.551ENSGMOG00000015074pspc19262.903Gadus_morhua
MGP_CAROLIEiJ_G0019341Pspc19987.097ENSGALG00000017142PSPC19987.716Gallus_gallus
MGP_CAROLIEiJ_G0019341Pspc18467.347ENSGAFG00000006327pspc17275.072Gambusia_affinis
MGP_CAROLIEiJ_G0019341Pspc18669.307ENSGACG00000014901pspc19273.171Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0019341Pspc19985.985ENSGAGG00000019164PSPC19987.259Gopherus_agassizii
MGP_CAROLIEiJ_G0019341Pspc18471.429ENSGAGG00000017325-5866.580Gopherus_agassizii
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSGGOG00000003414PSPC110097.137Gorilla_gorilla
MGP_CAROLIEiJ_G0019341Pspc19966.250ENSHBUG00000001139pspc110063.216Haplochromis_burtoni
MGP_CAROLIEiJ_G0019341Pspc110095.611ENSHGLG00000018811PSPC110094.656Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0019341Pspc18491.837ENSHGLG00100007962PSPC110092.264Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0019341Pspc18270.312ENSHCOG00000013251pspc19364.608Hippocampus_comes
MGP_CAROLIEiJ_G0019341Pspc18877.295ENSIPUG00000013192pspc19172.371Ictalurus_punctatus
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSSTOG00000026833PSPC110097.328Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0019341Pspc110097.514ENSJJAG00000018334Pspc110097.514Jaculus_jaculus
MGP_CAROLIEiJ_G0019341Pspc18463.265ENSKMAG00000013525-7961.671Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0019341Pspc18871.498ENSLBEG00000004474pspc17275.291Labrus_bergylta
MGP_CAROLIEiJ_G0019341Pspc19977.684ENSLACG00000010762PSPC19977.256Latimeria_chalumnae
MGP_CAROLIEiJ_G0019341Pspc19978.525ENSLOCG00000010832pspc19977.586Lepisosteus_oculatus
MGP_CAROLIEiJ_G0019341Pspc110095.793ENSLAFG00000010968PSPC110095.793Loxodonta_africana
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSMFAG00000032728PSPC110097.328Macaca_fascicularis
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSMMUG00000020262PSPC110097.328Macaca_mulatta
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSMNEG00000027401PSPC110097.328Macaca_nemestrina
MGP_CAROLIEiJ_G0019341Pspc110098.250ENSMLEG00000039043PSPC110098.250Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0019341Pspc18672.772ENSMAMG00000004333pspc17573.058Mastacembelus_armatus
MGP_CAROLIEiJ_G0019341Pspc18172.340ENSMZEG00005028170-6575.000Maylandia_zebra
MGP_CAROLIEiJ_G0019341Pspc19955.765ENSMZEG00005005726pspc110053.761Maylandia_zebra
MGP_CAROLIEiJ_G0019341Pspc17893.103ENSMGAG00000015134PSPC110093.103Meleagris_gallopavo
MGP_CAROLIEiJ_G0019341Pspc110093.133ENSMAUG00000021067Pspc110093.133Mesocricetus_auratus
MGP_CAROLIEiJ_G0019341Pspc110097.210ENSMICG00000013970PSPC110096.941Microcebus_murinus
MGP_CAROLIEiJ_G0019341Pspc110099.235ENSMOCG00000006060Pspc110099.235Microtus_ochrogaster
MGP_CAROLIEiJ_G0019341Pspc18168.085ENSMMOG00000004352pspc15951.929Mola_mola
MGP_CAROLIEiJ_G0019341Pspc19996.328ENSMODG00000008029PSPC17895.679Monodelphis_domestica
MGP_CAROLIEiJ_G0019341Pspc18672.030ENSMALG00000008914pspc18369.355Monopterus_albus
MGP_CAROLIEiJ_G0019341Pspc110099.809ENSMUSG00000021938Pspc110099.809Mus_musculus
MGP_CAROLIEiJ_G0019341Pspc1100100.000MGP_PahariEiJ_G0030359Pspc1100100.000Mus_pahari
MGP_CAROLIEiJ_G0019341Pspc110099.618MGP_SPRETEiJ_G0020232Pspc110099.618Mus_spretus
MGP_CAROLIEiJ_G0019341Pspc110096.756ENSMPUG00000013347PSPC110096.756Mustela_putorius_furo
MGP_CAROLIEiJ_G0019341Pspc110095.636ENSMLUG00000017663PSPC110095.636Myotis_lucifugus
MGP_CAROLIEiJ_G0019341Pspc110097.514ENSNGAG00000011271Pspc110097.514Nannospalax_galili
MGP_CAROLIEiJ_G0019341Pspc18170.213ENSNBRG00000014059pspc19260.197Neolamprologus_brichardi
MGP_CAROLIEiJ_G0019341Pspc110097.328ENSNLEG00000001294PSPC110097.328Nomascus_leucogenys
MGP_CAROLIEiJ_G0019341Pspc18495.703ENSMEUG00000000476PSPC18495.703Notamacropus_eugenii
MGP_CAROLIEiJ_G0019341Pspc19987.527ENSODEG00000019012-10084.717Octodon_degus
MGP_CAROLIEiJ_G0019341Pspc110084.351ENSODEG00000007817-10080.943Octodon_degus
MGP_CAROLIEiJ_G0019341Pspc19966.458ENSONIG00000012010pspc19065.863Oreochromis_niloticus
MGP_CAROLIEiJ_G0019341Pspc17696.750ENSOANG00000009017-10096.750Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0019341Pspc19966.667ENSOANG00000011381-9963.429Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSOCUG00000006153PSPC110097.137Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0019341Pspc18673.881ENSORLG00000004232-8267.882Oryzias_latipes
MGP_CAROLIEiJ_G0019341Pspc18674.010ENSORLG00020000578PSPC18268.578Oryzias_latipes_hni
MGP_CAROLIEiJ_G0019341Pspc18674.010ENSORLG00015017480pspc17771.776Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0019341Pspc110097.710ENSOGAG00000012643PSPC110097.710Otolemur_garnettii
MGP_CAROLIEiJ_G0019341Pspc110090.667ENSOARG00000014163PSPC110090.667Ovis_aries
MGP_CAROLIEiJ_G0019341Pspc18991.631ENSPPAG00000009836PSPC19696.765Pan_paniscus
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSPPRG00000008833PSPC110097.137Panthera_pardus
MGP_CAROLIEiJ_G0019341Pspc110082.218ENSPTIG00000016917PSPC110082.218Panthera_tigris_altaica
MGP_CAROLIEiJ_G0019341Pspc19997.408ENSPTRG00000005677PSPC19997.331Pan_troglodytes
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSPANG00000001992PSPC110097.137Papio_anubis
MGP_CAROLIEiJ_G0019341Pspc18779.259ENSPKIG00000003578pspc18177.701Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0019341Pspc19986.817ENSPSIG00000005168PSPC19986.226Pelodiscus_sinensis
MGP_CAROLIEiJ_G0019341Pspc18161.702ENSPMGG00000015135pspc18669.968Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0019341Pspc110099.235ENSPEMG00000015214Pspc110099.235Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0019341Pspc18438.776ENSPMAG00000004618pspc17947.692Petromyzon_marinus
MGP_CAROLIEiJ_G0019341Pspc19996.537ENSPCIG00000017680PSPC110095.985Phascolarctos_cinereus
MGP_CAROLIEiJ_G0019341Pspc19070.534ENSPFOG00000003362pspc19365.923Poecilia_formosa
MGP_CAROLIEiJ_G0019341Pspc19070.534ENSPLAG00000011540pspc19265.923Poecilia_latipinna
MGP_CAROLIEiJ_G0019341Pspc18471.429ENSPLAG00000004407-5364.770Poecilia_latipinna
MGP_CAROLIEiJ_G0019341Pspc18471.429ENSPMEG00000001025-5364.770Poecilia_mexicana
MGP_CAROLIEiJ_G0019341Pspc19070.070ENSPMEG00000008322pspc19265.517Poecilia_mexicana
MGP_CAROLIEiJ_G0019341Pspc19069.838ENSPREG00000007786pspc19265.517Poecilia_reticulata
MGP_CAROLIEiJ_G0019341Pspc110097.210ENSPPYG00000005186PSPC110096.941Pongo_abelii
MGP_CAROLIEiJ_G0019341Pspc178100.000ENSPCAG00000008314-6699.390Procavia_capensis
MGP_CAROLIEiJ_G0019341Pspc110093.321ENSPCOG00000014364PSPC110093.321Propithecus_coquereli
MGP_CAROLIEiJ_G0019341Pspc110092.543ENSPVAG00000005036PSPC110093.499Pteropus_vampyrus
MGP_CAROLIEiJ_G0019341Pspc19956.042ENSPNYG00000008893pspc110053.945Pundamilia_nyererei
MGP_CAROLIEiJ_G0019341Pspc19970.085ENSPNAG00000016511pspc110066.667Pygocentrus_nattereri
MGP_CAROLIEiJ_G0019341Pspc110099.044ENSRNOG00000020782Pspc110099.044Rattus_norvegicus
MGP_CAROLIEiJ_G0019341Pspc19397.131ENSRBIG00000036057PSPC110097.131Rhinopithecus_bieti
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSRROG00000036334PSPC110097.137Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0019341Pspc17987.681ENSSBOG00000028172PSPC19094.946Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0019341Pspc110090.684ENSSHAG00000004696PSPC110090.684Sarcophilus_harrisii
MGP_CAROLIEiJ_G0019341Pspc18681.000ENSSFOG00015001395pspc18978.322Scleropages_formosus
MGP_CAROLIEiJ_G0019341Pspc18671.883ENSSMAG00000001761pspc18674.286Scophthalmus_maximus
MGP_CAROLIEiJ_G0019341Pspc18675.743ENSSDUG00000010651pspc17475.550Seriola_dumerili
MGP_CAROLIEiJ_G0019341Pspc18469.388ENSSLDG00000004284pspc18161.521Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0019341Pspc110088.910ENSSARG00000000888PSPC110089.293Sorex_araneus
MGP_CAROLIEiJ_G0019341Pspc18473.469ENSSPUG00000001136-5361.453Sphenodon_punctatus
MGP_CAROLIEiJ_G0019341Pspc18491.837ENSSPUG00000008550PSPC19975.240Sphenodon_punctatus
MGP_CAROLIEiJ_G0019341Pspc18874.396ENSSPAG00000001921pspc18071.954Stegastes_partitus
MGP_CAROLIEiJ_G0019341Pspc110095.220ENSSSCG00000009569PSPC110094.837Sus_scrofa
MGP_CAROLIEiJ_G0019341Pspc18994.218ENSTGUG00000011295PSPC110094.218Taeniopygia_guttata
MGP_CAROLIEiJ_G0019341Pspc19462.416ENSTRUG00000011335pspc17766.019Takifugu_rubripes
MGP_CAROLIEiJ_G0019341Pspc18667.327ENSTNIG00000010358pspc18466.114Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0019341Pspc19979.914ENSTBEG00000002361PSPC110075.717Tupaia_belangeri
MGP_CAROLIEiJ_G0019341Pspc110095.602ENSTTRG00000003343PSPC110095.602Tursiops_truncatus
MGP_CAROLIEiJ_G0019341Pspc18491.837ENSUAMG00000012309PSPC110097.151Ursus_americanus
MGP_CAROLIEiJ_G0019341Pspc19396.926ENSUMAG00000013993PSPC110096.926Ursus_maritimus
MGP_CAROLIEiJ_G0019341Pspc17698.000ENSVPAG00000010029PSPC110098.000Vicugna_pacos
MGP_CAROLIEiJ_G0019341Pspc110097.137ENSVVUG00000006414PSPC110097.416Vulpes_vulpes
MGP_CAROLIEiJ_G0019341Pspc18465.306ENSXCOG00000017438pspc18374.212Xiphophorus_couchianus
MGP_CAROLIEiJ_G0019341Pspc18465.306ENSXMAG00000007929pspc18374.499Xiphophorus_maculatus

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