EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0019467 (Gene tree)
Gene ID: 110309151
Gene Symbol: R3hcc1
Alias: 1700020M16Rik
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 10318 bases
Position: chr14:60798428-60808745
Accession: 1919093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0037260	R3H	PF01424.22	1.8e-15	1	1
MGP_CAROLIEiJ_P0037261	R3H	PF01424.22	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0037260	-	1726	-	MGP_CAROLIEiJ_P0037260	488 (aa)	-	-
MGP_CAROLIEiJ_T0037261	-	1958	-	MGP_CAROLIEiJ_P0037261	488 (aa)	-	-
MGP_CAROLIEiJ_T0037262	-	407	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0037263	-	838	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0037264	-	440	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0019467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0019467's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.692	ENSG00000104679	R3HCC1	100	97.674	Homo_sapiens
MGP_CAROLIEiJ_G0019467	R3hcc1	60	44.937	ENSAPOG00000003616	r3hcc1	64	44.898	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.434	ENSAMEG00000002963	R3HCC1	92	62.626	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0019467	R3hcc1	58	41.781	ENSACIG00000017144	r3hcc1	84	38.356	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0019467	R3hcc1	56	46.154	ENSAOCG00000003945	r3hcc1	81	45.578	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0019467	R3hcc1	57	46.154	ENSAPEG00000003613	r3hcc1	81	44.898	Amphiprion_percula
MGP_CAROLIEiJ_G0019467	R3hcc1	56	41.781	ENSATEG00000023860	r3hcc1	66	42.568	Anabas_testudineus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	45.051	ENSACAG00000016627	R3HCC1	97	42.886	Anolis_carolinensis
MGP_CAROLIEiJ_G0019467	R3hcc1	85	78.824	ENSANAG00000036169	R3HCC1	95	65.447	Aotus_nancymaae
MGP_CAROLIEiJ_G0019467	R3hcc1	99	62.781	ENSBTAG00000025830	R3HCC1	96	62.702	Bos_taurus
MGP_CAROLIEiJ_G0019467	R3hcc1	86	76.471	ENSCJAG00000020118	R3HCC1	99	56.592	Callithrix_jacchus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	57.374	ENSCAFG00000009210	R3HCC1	96	58.182	Canis_familiaris
MGP_CAROLIEiJ_G0019467	R3hcc1	85	53.333	ENSCAFG00020012870	R3HCC1	86	54.762	Canis_lupus_dingo
MGP_CAROLIEiJ_G0019467	R3hcc1	99	60.941	ENSCHIG00000009107	R3HCC1	99	60.532	Capra_hircus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	65.298	ENSTSYG00000000511	R3HCC1	76	65.839	Carlito_syrichta
MGP_CAROLIEiJ_G0019467	R3hcc1	91	56.152	ENSCAPG00000015813	R3HCC1	52	63.889	Cavia_aperea
MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.599	ENSCPOG00000009696	R3HCC1	55	69.380	Cavia_porcellus
MGP_CAROLIEiJ_G0019467	R3hcc1	86	78.235	ENSCCAG00000037811	R3HCC1	99	56.592	Cebus_capucinus
MGP_CAROLIEiJ_G0019467	R3hcc1	86	78.235	ENSCATG00000032971	R3HCC1	98	95.652	Cercocebus_atys
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.642	ENSCSAG00000016250	R3HCC1	91	63.692	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	61.538	ENSCANG00000029441	R3HCC1	98	95.652	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0019467	R3hcc1	100	80.855	ENSCGRG00001014977	R3hcc1	100	80.652	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0019467	R3hcc1	100	80.855	ENSCGRG00000004454	R3hcc1	100	80.652	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0019467	R3hcc1	67	47.333	ENSCSEG00000005748	r3hcc1	76	47.619	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0019467	R3hcc1	71	38.710	ENSDARG00000099593	r3hcc1	75	43.448	Danio_rerio
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.026	ENSDNOG00000007168	R3HCC1	92	62.195	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	65.714	ENSDORG00000026365	R3hcc1	99	65.594	Dipodomys_ordii
MGP_CAROLIEiJ_G0019467	R3hcc1	99	53.644	ENSETEG00000001147	R3HCC1	97	57.317	Echinops_telfairi
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.879	ENSEASG00005018782	R3HCC1	81	62.500	Equus_asinus_asinus
MGP_CAROLIEiJ_G0019467	R3hcc1	85	78.571	ENSECAG00000025013	R3HCC1	98	62.903	Equus_caballus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.267	ENSEEUG00000011918	R3HCC1	96	60.896	Erinaceus_europaeus
MGP_CAROLIEiJ_G0019467	R3hcc1	91	33.113	ENSELUG00000023650	r3hcc1	69	49.474	Esox_lucius
MGP_CAROLIEiJ_G0019467	R3hcc1	98	60.412	ENSFCAG00000012395	R3HCC1	95	64.198	Felis_catus
MGP_CAROLIEiJ_G0019467	R3hcc1	97	38.277	ENSFALG00000001646	R3HCC1	81	37.897	Ficedula_albicollis
MGP_CAROLIEiJ_G0019467	R3hcc1	100	62.653	ENSFDAG00000001572	R3HCC1	100	62.348	Fukomys_damarensis
MGP_CAROLIEiJ_G0019467	R3hcc1	57	36.620	ENSGMOG00000017590	-	68	43.333	Gadus_morhua
MGP_CAROLIEiJ_G0019467	R3hcc1	97	32.427	ENSGAFG00000008747	-	63	45.390	Gambusia_affinis
MGP_CAROLIEiJ_G0019467	R3hcc1	97	32.143	ENSGACG00000008447	r3hcc1	68	44.218	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0019467	R3hcc1	63	59.509	ENSGAGG00000018009	R3HCC1	50	61.184	Gopherus_agassizii
MGP_CAROLIEiJ_G0019467	R3hcc1	86	79.412	ENSGGOG00000013817	R3HCC1	99	64.097	Gorilla_gorilla
MGP_CAROLIEiJ_G0019467	R3hcc1	83	78.882	ENSHGLG00000010517	R3HCC1	92	63.473	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0019467	R3hcc1	83	78.882	ENSHGLG00100006388	R3HCC1	92	63.473	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0019467	R3hcc1	61	43.226	ENSHCOG00000011745	r3hcc1	70	44.898	Hippocampus_comes
MGP_CAROLIEiJ_G0019467	R3hcc1	97	36.866	ENSIPUG00000024504	r3hcc1	64	45.890	Ictalurus_punctatus
MGP_CAROLIEiJ_G0019467	R3hcc1	76	77.576	ENSSTOG00000027130	R3HCC1	78	78.395	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	68.952	ENSJJAG00000013075	R3hcc1	99	68.889	Jaculus_jaculus
MGP_CAROLIEiJ_G0019467	R3hcc1	54	44.056	ENSKMAG00000000286	r3hcc1	68	42.857	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0019467	R3hcc1	64	50.345	ENSLACG00000011894	R3HCC1	65	50.340	Latimeria_chalumnae
MGP_CAROLIEiJ_G0019467	R3hcc1	69	46.000	ENSLOCG00000015442	r3hcc1	78	46.479	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	62.602	ENSLAFG00000016137	R3HCC1	95	61.992	Loxodonta_africana
MGP_CAROLIEiJ_G0019467	R3hcc1	85	80.000	ENSMFAG00000032894	R3HCC1	98	95.652	Macaca_fascicularis
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.841	ENSMMUG00000016655	R3HCC1	99	57.201	Macaca_mulatta
MGP_CAROLIEiJ_G0019467	R3hcc1	85	80.606	ENSMNEG00000043283	R3HCC1	99	56.998	Macaca_nemestrina
MGP_CAROLIEiJ_G0019467	R3hcc1	99	60.649	ENSMLEG00000030147	R3HCC1	98	95.652	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0019467	R3hcc1	57	45.223	ENSMAMG00000018146	r3hcc1	72	44.898	Mastacembelus_armatus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	37.897	ENSMGAG00000001356	R3HCC1	64	57.407	Meleagris_gallopavo
MGP_CAROLIEiJ_G0019467	R3hcc1	100	77.126	ENSMAUG00000016096	R3hcc1	100	77.246	Mesocricetus_auratus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	61.507	ENSMICG00000011146	R3HCC1	94	64.358	Microcebus_murinus
MGP_CAROLIEiJ_G0019467	R3hcc1	100	78.004	ENSMOCG00000018508	R3hcc1	100	78.615	Microtus_ochrogaster
MGP_CAROLIEiJ_G0019467	R3hcc1	100	97.541	ENSMUSG00000034194	R3hcc1	100	97.541	Mus_musculus
MGP_CAROLIEiJ_G0019467	R3hcc1	100	92.510	MGP_PahariEiJ_G0030484	R3hcc1	100	89.676	Mus_pahari
MGP_CAROLIEiJ_G0019467	R3hcc1	100	96.945	MGP_SPRETEiJ_G0020359	R3hcc1	100	96.945	Mus_spretus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	58.990	ENSMPUG00000003457	R3HCC1	87	61.616	Mustela_putorius_furo
MGP_CAROLIEiJ_G0019467	R3hcc1	99	56.768	ENSMLUG00000000266	R3HCC1	92	60.000	Myotis_lucifugus
MGP_CAROLIEiJ_G0019467	R3hcc1	91	59.243	ENSNLEG00000015944	R3HCC1	85	62.806	Nomascus_leucogenys
MGP_CAROLIEiJ_G0019467	R3hcc1	72	64.118	ENSMEUG00000010587	R3HCC1	96	67.089	Notamacropus_eugenii
MGP_CAROLIEiJ_G0019467	R3hcc1	73	74.850	ENSOPRG00000013390	R3HCC1	78	74.847	Ochotona_princeps
MGP_CAROLIEiJ_G0019467	R3hcc1	98	60.960	ENSODEG00000007529	R3HCC1	100	58.979	Octodon_degus
MGP_CAROLIEiJ_G0019467	R3hcc1	58	41.718	ENSORLG00000016816	r3hcc1	82	44.138	Oryzias_latipes
MGP_CAROLIEiJ_G0019467	R3hcc1	58	41.718	ENSORLG00020012005	r3hcc1	82	44.138	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0019467	R3hcc1	58	42.331	ENSORLG00015007018	r3hcc1	71	44.828	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0019467	R3hcc1	57	40.244	ENSOMEG00000000816	r3hcc1	70	42.069	Oryzias_melastigma
MGP_CAROLIEiJ_G0019467	R3hcc1	84	78.182	ENSOGAG00000001291	R3HCC1	92	62.475	Otolemur_garnettii
MGP_CAROLIEiJ_G0019467	R3hcc1	99	61.396	ENSOARG00000010146	R3HCC1	96	61.943	Ovis_aries
MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.211	ENSPPAG00000033165	R3HCC1	99	63.489	Pan_paniscus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.959	ENSPPRG00000002522	R3HCC1	99	64.228	Panthera_pardus
MGP_CAROLIEiJ_G0019467	R3hcc1	93	57.112	ENSPTIG00000011230	R3HCC1	95	61.283	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0019467	R3hcc1	86	80.000	ENSPTRG00000020076	R3HCC1	99	58.824	Pan_troglodytes
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.443	ENSPANG00000000453	R3HCC1	98	95.652	Papio_anubis
MGP_CAROLIEiJ_G0019467	R3hcc1	59	49.020	ENSPKIG00000020397	-	74	48.630	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0019467	R3hcc1	59	49.020	ENSPKIG00000014426	-	80	48.630	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0019467	R3hcc1	98	43.487	ENSPSIG00000017664	R3HCC1	97	42.480	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0019467	R3hcc1	100	80.894	ENSPEMG00000007118	R3hcc1	100	79.675	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0019467	R3hcc1	66	40.940	ENSPFOG00000022301	r3hcc1	64	42.069	Poecilia_formosa
MGP_CAROLIEiJ_G0019467	R3hcc1	65	40.523	ENSPLAG00000010794	r3hcc1	64	42.069	Poecilia_latipinna
MGP_CAROLIEiJ_G0019467	R3hcc1	66	40.940	ENSPMEG00000022515	r3hcc1	64	42.069	Poecilia_mexicana
MGP_CAROLIEiJ_G0019467	R3hcc1	97	32.068	ENSPREG00000000713	r3hcc1	64	41.379	Poecilia_reticulata
MGP_CAROLIEiJ_G0019467	R3hcc1	93	58.785	ENSPPYG00000018436	R3HCC1	99	61.656	Pongo_abelii
MGP_CAROLIEiJ_G0019467	R3hcc1	68	77.564	ENSPCAG00000012229	R3HCC1	72	77.564	Procavia_capensis
MGP_CAROLIEiJ_G0019467	R3hcc1	99	61.100	ENSPCOG00000027554	R3HCC1	99	63.951	Propithecus_coquereli
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.298	ENSPVAG00000009829	R3HCC1	95	63.017	Pteropus_vampyrus
MGP_CAROLIEiJ_G0019467	R3hcc1	59	43.357	ENSPNAG00000023875	r3hcc1	74	43.056	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0019467	R3hcc1	100	88.367	ENSRNOG00000016777	AABR07018321.1	82	87.551	Rattus_norvegicus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	60.239	ENSRBIG00000028045	R3HCC1	98	95.652	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0019467	R3hcc1	99	60.239	ENSRROG00000031126	R3HCC1	98	95.652	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.599	ENSSBOG00000022590	R3HCC1	99	63.618	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0019467	R3hcc1	56	69.600	ENSSHAG00000016526	-	55	81.915	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0019467	R3hcc1	59	46.154	ENSSDUG00000022786	r3hcc1	72	45.205	Seriola_dumerili
MGP_CAROLIEiJ_G0019467	R3hcc1	59	46.154	ENSSLDG00000019031	r3hcc1	72	45.205	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0019467	R3hcc1	94	31.733	ENSSPAG00000013497	r3hcc1	67	47.619	Stegastes_partitus
MGP_CAROLIEiJ_G0019467	R3hcc1	98	57.588	ENSSSCG00000037347	-	92	57.083	Sus_scrofa
MGP_CAROLIEiJ_G0019467	R3hcc1	99	59.514	ENSSSCG00000039915	-	93	62.348	Sus_scrofa
MGP_CAROLIEiJ_G0019467	R3hcc1	74	38.182	ENSTRUG00000015880	r3hcc1	85	41.667	Takifugu_rubripes
MGP_CAROLIEiJ_G0019467	R3hcc1	98	52.156	ENSTTRG00000012247	R3HCC1	94	56.263	Tursiops_truncatus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	58.727	ENSUAMG00000007344	R3HCC1	98	61.728	Ursus_americanus
MGP_CAROLIEiJ_G0019467	R3hcc1	99	57.576	ENSVVUG00000005056	R3HCC1	96	60.202	Vulpes_vulpes
MGP_CAROLIEiJ_G0019467	R3hcc1	60	40.602	ENSXCOG00000017626	r3hcc1	61	42.177	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0019467	R3hcc1	59	43.357	ENSXMAG00000018375	r3hcc1	64	42.466	Xiphophorus_maculatus