EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0019936 (Gene tree)
Gene ID: 110311116
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 11971 bases
Position: chr15:70537345-70549315
Accession: 110311116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0038707	CPSF_A	PF03178.15	4.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0038707	-	4513	XM_021184347	MGP_CAROLIEiJ_P0038707	1441 (aa)	XP_021040006	UPI000A317054

Gene Model

Click here to download MGP_CAROLIEiJ_G0019936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0019936's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.604	ENSG00000071894	CPSF1	100	96.604	Homo_sapiens
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.958	ENSAPOG00000019621	cpsf1	100	78.161	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	94.782	ENSAMEG00000005557	CPSF1	100	94.782	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.532	ENSACIG00000006112	cpsf1	100	78.878	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.600	ENSAOCG00000007120	cpsf1	100	79.807	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.945	ENSAPEG00000005755	cpsf1	100	80.083	Amphiprion_percula
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.935	ENSATEG00000011097	cpsf1	100	78.273	Anabas_testudineus
MGP_CAROLIEiJ_G0019936	Cpsf1	93	81.832	ENSACAG00000009655	CPSF1	100	81.832	Anolis_carolinensis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.671	ENSANAG00000036514	CPSF1	100	96.671	Aotus_nancymaae
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.632	ENSACLG00000012231	cpsf1	99	79.014	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0019936	Cpsf1	100	73.997	ENSAMXG00000008485	cpsf1	100	74.066	Astyanax_mexicanus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	94.418	ENSBTAG00000008355	CPSF1	100	94.669	Bos_taurus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	32.016	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.602	ENSCJAG00000021421	CPSF1	100	96.602	Callithrix_jacchus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.352	ENSCAFG00000001600	CPSF1	100	96.477	Canis_familiaris
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.537	ENSCAFG00020020821	CPSF1	100	96.537	Canis_lupus_dingo
MGP_CAROLIEiJ_G0019936	Cpsf1	100	90.707	ENSCHIG00000015833	CPSF1	100	90.707	Capra_hircus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.365	ENSTSYG00000028560	CPSF1	100	97.365	Carlito_syrichta
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.485	ENSCAPG00000014921	CPSF1	99	96.485	Cavia_aperea
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.047	ENSCPOG00000011448	CPSF1	100	96.047	Cavia_porcellus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.810	ENSCCAG00000037658	CPSF1	100	96.810	Cebus_capucinus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.463	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.918	ENSCLAG00000012166	CPSF1	100	97.918	Chinchilla_lanigera
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.602	ENSCSAG00000008502	CPSF1	100	96.602	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0019936	Cpsf1	99	88.025	ENSCPBG00000018910	CPSF1	96	88.025	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0019936	Cpsf1	96	48.672	ENSCING00000000514	-	100	48.600	Ciona_intestinalis
MGP_CAROLIEiJ_G0019936	Cpsf1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
MGP_CAROLIEiJ_G0019936	Cpsf1	99	90.973	ENSCANG00000032760	CPSF1	99	90.973	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.959	ENSCGRG00001016344	Cpsf1	100	98.959	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.461	ENSCGRG00000003118	Cpsf1	100	96.461	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.824	ENSCSEG00000013464	cpsf1	100	78.032	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0019936	Cpsf1	85	77.133	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.325	ENSDARG00000034178	cpsf1	100	79.394	Danio_rerio
MGP_CAROLIEiJ_G0019936	Cpsf1	57	96.522	ENSDNOG00000043654	CPSF1	96	91.421	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	97.202	ENSDORG00000006278	Cpsf1	99	97.202	Dipodomys_ordii
MGP_CAROLIEiJ_G0019936	Cpsf1	100	45.051	FBgn0024698	Cpsf160	100	45.094	Drosophila_melanogaster
MGP_CAROLIEiJ_G0019936	Cpsf1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.161	ENSEASG00005010774	CPSF1	100	97.161	Equus_asinus_asinus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.161	ENSECAG00000022209	CPSF1	100	97.161	Equus_caballus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	94.740	ENSEEUG00000000471	CPSF1	100	94.740	Erinaceus_europaeus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.724	ENSELUG00000012271	cpsf1	100	78.204	Esox_lucius
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.710	ENSFDAG00000016060	CPSF1	100	97.710	Fukomys_damarensis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.119	ENSFHEG00000016801	cpsf1	100	77.188	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.153	ENSGMOG00000000796	cpsf1	100	78.360	Gadus_morhua
MGP_CAROLIEiJ_G0019936	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.542	ENSGACG00000008703	cpsf1	100	78.532	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	84.360	ENSGAGG00000004276	CPSF1	98	88.077	Gopherus_agassizii
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.669	ENSGGOG00000016185	CPSF1	100	96.669	Gorilla_gorilla
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.917	ENSHBUG00000018900	cpsf1	100	80.055	Haplochromis_burtoni
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.779	ENSHGLG00000016139	CPSF1	100	97.779	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.710	ENSHGLG00100009750	CPSF1	100	97.710	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.341	ENSHCOG00000018509	cpsf1	100	77.257	Hippocampus_comes
MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.341	ENSIPUG00000011259	cpsf1	100	76.341	Ictalurus_punctatus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	97.141	ENSSTOG00000009957	CPSF1	99	97.141	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.918	ENSJJAG00000023002	Cpsf1	100	97.918	Jaculus_jaculus
MGP_CAROLIEiJ_G0019936	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.454	ENSLBEG00000003601	cpsf1	100	77.913	Labrus_bergylta
MGP_CAROLIEiJ_G0019936	Cpsf1	88	81.851	ENSLACG00000000233	CPSF1	92	81.851	Latimeria_chalumnae
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.522	ENSLOCG00000008484	cpsf1	100	78.798	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	95.562	ENSLAFG00000022601	CPSF1	100	95.562	Loxodonta_africana
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.463	ENSMFAG00000037013	CPSF1	99	97.612	Macaca_fascicularis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.533	ENSMMUG00000007380	CPSF1	100	96.533	Macaca_mulatta
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.557	ENSMNEG00000043564	CPSF1	100	96.557	Macaca_nemestrina
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.463	ENSMLEG00000043010	CPSF1	99	97.612	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.769	Mastacembelus_armatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.770	ENSMZEG00005001168	cpsf1	100	77.909	Maylandia_zebra
MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.959	ENSMAUG00000003601	Cpsf1	100	98.959	Mesocricetus_auratus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.363	ENSMICG00000015767	CPSF1	100	97.363	Microcebus_murinus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.820	ENSMOCG00000022758	Cpsf1	100	98.820	Microtus_ochrogaster
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.168	ENSMODG00000010755	CPSF1	100	93.168	Monodelphis_domestica
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.657	ENSMALG00000020545	cpsf1	100	77.861	Monopterus_albus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.861	ENSMUSG00000034022	Cpsf1	100	99.861	Mus_musculus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.653	MGP_PahariEiJ_G0019946	Cpsf1	100	99.653	Mus_pahari
MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.931	MGP_SPRETEiJ_G0020839	Cpsf1	100	99.931	Mus_spretus
MGP_CAROLIEiJ_G0019936	Cpsf1	94	95.997	ENSMPUG00000006419	CPSF1	93	95.997	Mustela_putorius_furo
MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.057	ENSNGAG00000022460	Cpsf1	100	98.057	Nannospalax_galili
MGP_CAROLIEiJ_G0019936	Cpsf1	100	75.017	ENSNBRG00000000813	cpsf1	100	75.017	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0019936	Cpsf1	86	85.025	ENSNLEG00000010633	-	100	88.889	Nomascus_leucogenys
MGP_CAROLIEiJ_G0019936	Cpsf1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
MGP_CAROLIEiJ_G0019936	Cpsf1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.057	ENSODEG00000013995	CPSF1	100	98.057	Octodon_degus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	80.263	ENSONIG00000007676	cpsf1	100	80.402	Oreochromis_niloticus
MGP_CAROLIEiJ_G0019936	Cpsf1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.634	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.770	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.619	ENSORLG00015009979	cpsf1	100	77.687	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.861	ENSOMEG00000011849	cpsf1	100	78.065	Oryzias_melastigma
MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.226	ENSOGAG00000000315	CPSF1	100	97.226	Otolemur_garnettii
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.671	ENSPPAG00000019280	CPSF1	100	96.671	Pan_paniscus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	95.024	ENSPTRG00000051253	-	100	95.024	Pan_troglodytes
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.671	ENSPTRG00000049288	-	100	96.671	Pan_troglodytes
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.413	ENSPANG00000015005	CPSF1	100	96.413	Papio_anubis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	80.415	ENSPKIG00000002582	cpsf1	100	80.956	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.099	ENSPCIG00000009035	CPSF1	100	93.099	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.574	ENSPFOG00000012870	cpsf1	100	76.574	Poecilia_formosa
MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.387	ENSPREG00000016307	cpsf1	100	76.387	Poecilia_reticulata
MGP_CAROLIEiJ_G0019936	Cpsf1	100	88.696	ENSPPYG00000018973	CPSF1	100	88.696	Pongo_abelii
MGP_CAROLIEiJ_G0019936	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.481	ENSPCOG00000020001	CPSF1	100	93.481	Propithecus_coquereli
MGP_CAROLIEiJ_G0019936	Cpsf1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.879	ENSPNYG00000004906	cpsf1	100	79.016	Pundamilia_nyererei
MGP_CAROLIEiJ_G0019936	Cpsf1	100	74.983	ENSPNAG00000024395	cpsf1	100	74.983	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.445	ENSRNOG00000030705	Cpsf1	100	99.445	Rattus_norvegicus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.602	ENSRBIG00000044907	CPSF1	100	96.602	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.533	ENSRROG00000044861	CPSF1	100	96.533	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.557	ENSSBOG00000027177	CPSF1	100	96.557	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.099	ENSSHAG00000006500	CPSF1	100	93.099	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.153	ENSSFOG00015004606	cpsf1	100	81.441	Scleropages_formosus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.996	ENSSMAG00000020547	cpsf1	100	78.131	Scophthalmus_maximus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.391	ENSSDUG00000001100	cpsf1	100	79.737	Seriola_dumerili
MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.654	ENSSLDG00000003619	cpsf1	100	79.723	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0019936	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
MGP_CAROLIEiJ_G0019936	Cpsf1	96	88.176	ENSSPUG00000014396	CPSF1	100	88.176	Sphenodon_punctatus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.146	ENSSPAG00000005349	cpsf1	100	78.349	Stegastes_partitus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	95.706	ENSSSCG00000005906	CPSF1	100	95.706	Sus_scrofa
MGP_CAROLIEiJ_G0019936	Cpsf1	96	78.237	ENSTRUG00000013134	cpsf1	99	78.376	Takifugu_rubripes
MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.900	ENSTNIG00000014027	cpsf1	100	78.969	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0019936	Cpsf1	77	88.966	ENSTBEG00000001756	CPSF1	91	88.966	Tupaia_belangeri
MGP_CAROLIEiJ_G0019936	Cpsf1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.638	ENSUAMG00000006476	CPSF1	98	96.638	Ursus_americanus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.578	ENSXCOG00000003608	cpsf1	100	77.785	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.163	ENSXMAG00000005798	cpsf1	100	77.370	Xiphophorus_maculatus