EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020029 (Gene tree)
Gene ID: 110310320
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: DNA dC->dU-editing enzyme APOBEC-3
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 24742 bases
Position: chr15:73903802-73928543
Accession: 110310320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0039012	APOBEC_N	PF08210.11	3.7e-81	1	2
MGP_CAROLIEiJ_P0039012	APOBEC_N	PF08210.11	3.7e-81	2	2
MGP_CAROLIEiJ_P0039010	APOBEC_N	PF08210.11	4.5e-81	1	2
MGP_CAROLIEiJ_P0039010	APOBEC_N	PF08210.11	4.5e-81	2	2
MGP_CAROLIEiJ_P0039007	APOBEC_N	PF08210.11	4.6e-81	1	2
MGP_CAROLIEiJ_P0039007	APOBEC_N	PF08210.11	4.6e-81	2	2
MGP_CAROLIEiJ_P0039006	APOBEC_N	PF08210.11	5.1e-81	1	2
MGP_CAROLIEiJ_P0039006	APOBEC_N	PF08210.11	5.1e-81	2	2
MGP_CAROLIEiJ_P0039013	APOBEC_N	PF08210.11	1.7e-60	1	2
MGP_CAROLIEiJ_P0039013	APOBEC_N	PF08210.11	1.7e-60	2	2
MGP_CAROLIEiJ_P0039004	APOBEC_N	PF08210.11	4.6e-25	1	1
MGP_CAROLIEiJ_P0039014	APOBEC_N	PF08210.11	7.4e-23	1	1
MGP_CAROLIEiJ_P0039013	APOBEC_C	PF05240.14	3e-54	1	2
MGP_CAROLIEiJ_P0039013	APOBEC_C	PF05240.14	3e-54	2	2
MGP_CAROLIEiJ_P0039012	APOBEC_C	PF05240.14	7.5e-54	1	2
MGP_CAROLIEiJ_P0039012	APOBEC_C	PF05240.14	7.5e-54	2	2
MGP_CAROLIEiJ_P0039007	APOBEC_C	PF05240.14	7.8e-54	1	2
MGP_CAROLIEiJ_P0039007	APOBEC_C	PF05240.14	7.8e-54	2	2
MGP_CAROLIEiJ_P0039010	APOBEC_C	PF05240.14	7.9e-54	1	2
MGP_CAROLIEiJ_P0039010	APOBEC_C	PF05240.14	7.9e-54	2	2
MGP_CAROLIEiJ_P0039006	APOBEC_C	PF05240.14	8.5e-54	1	2
MGP_CAROLIEiJ_P0039006	APOBEC_C	PF05240.14	8.5e-54	2	2
MGP_CAROLIEiJ_P0039004	APOBEC_C	PF05240.14	2e-26	1	1
MGP_CAROLIEiJ_P0039014	APOBEC_C	PF05240.14	2.9e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0039011	-	2246	-	MGP_CAROLIEiJ_P0039011	392 (aa)	-	-
MGP_CAROLIEiJ_T0039010	-	2823	-	MGP_CAROLIEiJ_P0039010	429 (aa)	-	-
MGP_CAROLIEiJ_T0039013	-	1867	-	MGP_CAROLIEiJ_P0039013	297 (aa)	-	-
MGP_CAROLIEiJ_T0039012	-	1224	-	MGP_CAROLIEiJ_P0039012	407 (aa)	XP_021038821	UPI000A31B37D
MGP_CAROLIEiJ_T0039006	-	1979	-	MGP_CAROLIEiJ_P0039006	440 (aa)	-	UPI000A316C98
MGP_CAROLIEiJ_T0039007	-	2504	XM_021183161	MGP_CAROLIEiJ_P0039007	429 (aa)	XP_021038820	-
MGP_CAROLIEiJ_T0039004	-	756	-	MGP_CAROLIEiJ_P0039004	166 (aa)	-	-
MGP_CAROLIEiJ_T0039005	-	606	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0039008	-	699	-	MGP_CAROLIEiJ_P0039008	79 (aa)	-	-
MGP_CAROLIEiJ_T0039009	-	1217	-	MGP_CAROLIEiJ_P0039009	46 (aa)	-	UPI0002467581
MGP_CAROLIEiJ_T0039016	-	2112	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0039017	-	719	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0039015	-	739	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0039014	-	650	-	MGP_CAROLIEiJ_P0039014	85 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0020029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0020029	Apobec3	98	34.884	MGP_CAROLIEiJ_G0021727	Apobec2	77	35.227
MGP_CAROLIEiJ_G0020029	Apobec3	66	43.860	MGP_CAROLIEiJ_G0028824	-	95	41.304

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020029	Apobec3	92	47.568	ENSG00000100298	APOBEC3H	100	48.108	Homo_sapiens
MGP_CAROLIEiJ_G0020029	Apobec3	100	43.529	ENSAMEG00000010818	-	99	39.485	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020029	Apobec3	91	45.192	ENSANAG00000025410	APOBEC3H	95	46.341	Aotus_nancymaae
MGP_CAROLIEiJ_G0020029	Apobec3	98	53.012	ENSBTAG00000007755	APOBEC3H	91	47.212	Bos_taurus
MGP_CAROLIEiJ_G0020029	Apobec3	98	38.095	ENSCJAG00000012524	APOBEC3H	90	48.227	Callithrix_jacchus
MGP_CAROLIEiJ_G0020029	Apobec3	98	45.408	ENSCAFG00000001361	APOBEC3Z3	100	45.408	Canis_familiaris
MGP_CAROLIEiJ_G0020029	Apobec3	98	40.964	ENSCAFG00020002584	-	94	45.355	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020029	Apobec3	98	51.807	ENSCHIG00000026580	-	97	46.049	Capra_hircus
MGP_CAROLIEiJ_G0020029	Apobec3	98	42.169	ENSTSYG00000032894	-	94	48.795	Carlito_syrichta
MGP_CAROLIEiJ_G0020029	Apobec3	99	47.315	ENSCPOG00000009257	-	93	45.939	Cavia_porcellus
MGP_CAROLIEiJ_G0020029	Apobec3	89	44.554	ENSCCAG00000008525	APOBEC3H	95	46.117	Cebus_capucinus
MGP_CAROLIEiJ_G0020029	Apobec3	98	41.667	ENSCATG00000030302	APOBEC3H	100	49.457	Cercocebus_atys
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.485	ENSCLAG00000016615	-	96	48.980	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020029	Apobec3	99	47.115	ENSCSAG00000006371	APOBEC3H	95	47.115	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020029	Apobec3	100	67.550	ENSCGRG00001022976	Apobec3	100	65.865	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020029	Apobec3	100	68.000	ENSCGRG00000005621	Apobec3	100	65.865	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020029	Apobec3	100	55.294	ENSDORG00000027271	-	100	53.061	Dipodomys_ordii
MGP_CAROLIEiJ_G0020029	Apobec3	98	42.169	ENSEASG00005009166	-	70	41.711	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020029	Apobec3	98	47.514	ENSECAG00000007726	APOBEC3H	98	46.429	Equus_caballus
MGP_CAROLIEiJ_G0020029	Apobec3	98	48.469	ENSFCAG00000005251	APOBEC3Z3	99	48.469	Felis_catus
MGP_CAROLIEiJ_G0020029	Apobec3	92	46.524	ENSSTOG00000007125	-	86	46.328	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020029	Apobec3	99	53.009	ENSJJAG00000016840	-	99	48.529	Jaculus_jaculus
MGP_CAROLIEiJ_G0020029	Apobec3	98	43.373	ENSLAFG00000027404	-	96	42.663	Loxodonta_africana
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.020	ENSMFAG00000031827	APOBEC3H	95	48.020	Macaca_fascicularis
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.020	ENSMMUG00000001016	APOBEC3H	95	48.020	Macaca_mulatta
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.020	ENSMNEG00000039259	APOBEC3H	95	48.020	Macaca_nemestrina
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.276	ENSMLEG00000033417	APOBEC3H	95	48.276	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020029	Apobec3	100	67.774	ENSMAUG00000011683	Apobec3	100	64.819	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020029	Apobec3	100	66.667	ENSMOCG00000021576	Apobec3	100	62.500	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020029	Apobec3	100	91.919	ENSMUSG00000009585	Apobec3	100	91.919	Mus_musculus
MGP_CAROLIEiJ_G0020029	Apobec3	100	82.278	MGP_PahariEiJ_G0020031	-	100	82.278	Mus_pahari
MGP_CAROLIEiJ_G0020029	Apobec3	100	90.572	MGP_SPRETEiJ_G0020927	Apobec3	100	90.418	Mus_spretus
MGP_CAROLIEiJ_G0020029	Apobec3	98	43.098	ENSMPUG00000013239	-	96	43.307	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020029	Apobec3	98	61.446	ENSNGAG00000018998	Apobec3	99	60.269	Nannospalax_galili
MGP_CAROLIEiJ_G0020029	Apobec3	98	47.030	ENSNLEG00000015218	-	95	47.030	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020029	Apobec3	98	55.422	ENSOCUG00000023913	-	100	41.832	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020029	Apobec3	98	53.012	ENSOARG00000016290	APOBEC3F	95	47.212	Ovis_aries
MGP_CAROLIEiJ_G0020029	Apobec3	92	48.108	ENSPPAG00000036522	APOBEC3H	100	48.649	Pan_paniscus
MGP_CAROLIEiJ_G0020029	Apobec3	98	46.988	ENSPPRG00000003675	-	100	40.845	Panthera_pardus
MGP_CAROLIEiJ_G0020029	Apobec3	98	48.980	ENSPPRG00000003941	-	99	48.980	Panthera_pardus
MGP_CAROLIEiJ_G0020029	Apobec3	98	48.980	ENSPTIG00000010283	-	99	48.980	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020029	Apobec3	92	48.108	ENSPTRG00000014390	APOBEC3H	100	48.649	Pan_troglodytes
MGP_CAROLIEiJ_G0020029	Apobec3	99	48.515	ENSPANG00000010774	APOBEC3H	97	46.561	Papio_anubis
MGP_CAROLIEiJ_G0020029	Apobec3	98	66.265	ENSPEMG00000000456	Apobec3	99	63.492	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020029	Apobec3	93	47.783	ENSPPYG00000011834	-	95	47.783	Pongo_abelii
MGP_CAROLIEiJ_G0020029	Apobec3	98	39.759	ENSPCAG00000015655	-	99	39.007	Procavia_capensis
MGP_CAROLIEiJ_G0020029	Apobec3	98	48.193	ENSPVAG00000024161	-	100	45.926	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020029	Apobec3	98	40.964	ENSPVAG00000009462	-	100	45.509	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020029	Apobec3	98	44.578	ENSPVAG00000024267	-	100	44.444	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020029	Apobec3	98	72.619	ENSRNOG00000016852	Apobec3	100	70.707	Rattus_norvegicus
MGP_CAROLIEiJ_G0020029	Apobec3	93	48.020	ENSRBIG00000029088	APOBEC3H	95	48.020	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020029	Apobec3	97	47.196	ENSRROG00000024699	APOBEC3H	95	48.515	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020029	Apobec3	88	49.738	ENSSBOG00000030005	APOBEC3H	100	50.704	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020029	Apobec3	98	45.783	ENSSSCG00000000091	APOBEC3B	98	41.905	Sus_scrofa
MGP_CAROLIEiJ_G0020029	Apobec3	98	42.169	ENSTBEG00000001532	-	90	48.936	Tupaia_belangeri
MGP_CAROLIEiJ_G0020029	Apobec3	98	43.373	ENSTTRG00000001266	-	99	44.970	Tursiops_truncatus
MGP_CAROLIEiJ_G0020029	Apobec3	100	42.353	ENSUAMG00000004427	-	89	44.221	Ursus_americanus
MGP_CAROLIEiJ_G0020029	Apobec3	100	42.353	ENSUMAG00000014435	-	99	50.867	Ursus_maritimus
MGP_CAROLIEiJ_G0020029	Apobec3	88	45.333	ENSVPAG00000011108	-	98	46.429	Vicugna_pacos