EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020043 (Gene tree)
Gene ID: 110310222
Gene Symbol: Tnrc6b
Alias: 2700090M07Rik|A730065C02Rik|D230019K20Rik
Full Name: trinucleotide repeat containing 6b
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 228312 bases
Position: chr15:74735667-74963978
Accession: 2443730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0039052	Ago_hook	PF10427.9	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0039052	-	16983	-	MGP_CAROLIEiJ_P0039052	1810 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0020043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020043's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	34.755	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	35.609
MGP_CAROLIEiJ_G0020043	Tnrc6b	98	38.141	MGP_CAROLIEiJ_G0030425	Tnrc6a	98	39.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020043	Tnrc6b	98	92.329	ENSG00000100354	TNRC6B	100	96.108	Homo_sapiens
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	90.227	ENSAMEG00000011025	TNRC6B	100	89.811	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	84.370	ENSAPLG00000009347	TNRC6B	100	84.484	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	72.778	ENSACAG00000007281	TNRC6B	99	73.285	Anolis_carolinensis
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	93.743	ENSANAG00000035042	TNRC6B	100	95.755	Aotus_nancymaae
MGP_CAROLIEiJ_G0020043	Tnrc6b	51	47.569	ENSAMXG00000008707	tnrc6b	97	44.018	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020043	Tnrc6b	98	93.711	ENSBTAG00000021076	TNRC6B	99	93.789	Bos_taurus
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.009	ENSCJAG00000002732	TNRC6B	99	97.746	Callithrix_jacchus
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	94.749	ENSCAFG00000001255	TNRC6B	99	91.869	Canis_familiaris
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	94.667	ENSCAFG00020002189	TNRC6B	99	94.652	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	93.931	ENSCHIG00000003491	TNRC6B	100	93.987	Capra_hircus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	93.824	ENSTSYG00000011836	TNRC6B	100	94.222	Carlito_syrichta
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.372	ENSCPOG00000005705	TNRC6B	100	95.427	Cavia_porcellus
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	94.101	ENSCCAG00000019912	TNRC6B	100	92.335	Cebus_capucinus
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.126	ENSCATG00000029291	TNRC6B	100	94.464	Cercocebus_atys
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.532	ENSCLAG00000016942	TNRC6B	100	95.532	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	91.361	ENSCSAG00000006021	TNRC6B	99	91.191	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020043	Tnrc6b	89	84.368	ENSCPBG00000022932	TNRC6B	99	84.606	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.011	ENSCANG00000030776	TNRC6B	100	94.817	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	97.364	ENSCGRG00001020166	Tnrc6b	99	97.364	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	97.406	ENSCGRG00000016696	Tnrc6b	99	97.408	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	94.114	ENSDNOG00000012744	TNRC6B	100	94.265	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	96.139	ENSDORG00000003386	Tnrc6b	100	96.139	Dipodomys_ordii
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	83.493	ENSETEG00000006570	TNRC6B	99	84.059	Echinops_telfairi
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	95.142	ENSEASG00005005306	TNRC6B	99	94.928	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.267	ENSECAG00000009759	TNRC6B	99	97.000	Equus_caballus
MGP_CAROLIEiJ_G0020043	Tnrc6b	55	95.614	ENSEEUG00000008690	-	59	95.604	Erinaceus_europaeus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	94.673	ENSFCAG00000004791	TNRC6B	100	94.509	Felis_catus
MGP_CAROLIEiJ_G0020043	Tnrc6b	93	87.095	ENSFALG00000012195	TNRC6B	100	87.272	Ficedula_albicollis
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	96.247	ENSFDAG00000021368	TNRC6B	100	96.247	Fukomys_damarensis
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	88.136	ENSGALG00000012050	TNRC6B	97	88.079	Gallus_gallus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	86.930	ENSGAGG00000025188	TNRC6B	98	86.986	Gopherus_agassizii
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	94.653	ENSGGOG00000008444	TNRC6B	100	95.873	Gorilla_gorilla
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.157	ENSHGLG00000009306	TNRC6B	100	94.882	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.143	ENSHGLG00100018108	TNRC6B	100	94.978	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020043	Tnrc6b	80	45.023	ENSIPUG00000001515	tnrc6b	80	46.829	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	96.084	ENSSTOG00000008927	TNRC6B	100	96.084	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.856	ENSJJAG00000015779	Tnrc6b	100	95.856	Jaculus_jaculus
MGP_CAROLIEiJ_G0020043	Tnrc6b	98	61.897	ENSLACG00000000628	-	99	62.479	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020043	Tnrc6b	76	94.041	ENSLAFG00000014473	TNRC6B	99	94.113	Loxodonta_africana
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.402	ENSMFAG00000003862	TNRC6B	100	94.582	Macaca_fascicularis
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.215	ENSMMUG00000021345	TNRC6B	100	95.642	Macaca_mulatta
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	95.214	ENSMNEG00000042745	TNRC6B	99	94.929	Macaca_nemestrina
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.241	ENSMLEG00000041780	TNRC6B	100	95.642	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020043	Tnrc6b	98	83.832	ENSMGAG00000012333	TNRC6B	99	83.488	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	96.521	ENSMAUG00000016123	Tnrc6b	100	96.521	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	93.418	ENSMICG00000014056	TNRC6B	100	95.165	Microcebus_murinus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	98.500	ENSMOCG00000020334	Tnrc6b	100	98.500	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	99.392	ENSMUSG00000047888	Tnrc6b	100	99.392	Mus_musculus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	98.950	MGP_PahariEiJ_G0020045	Tnrc6b	100	98.950	Mus_pahari
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	99.613	MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.613	Mus_spretus
MGP_CAROLIEiJ_G0020043	Tnrc6b	95	96.952	ENSMPUG00000016442	TNRC6B	96	96.756	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	89.808	ENSMLUG00000008765	TNRC6B	99	89.551	Myotis_lucifugus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	95.870	ENSNGAG00000021294	Tnrc6b	100	95.870	Nannospalax_galili
MGP_CAROLIEiJ_G0020043	Tnrc6b	86	93.636	ENSNLEG00000015311	TNRC6B	100	96.108	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020043	Tnrc6b	91	85.279	ENSOPRG00000012054	TNRC6B	88	90.870	Ochotona_princeps
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	96.141	ENSODEG00000013146	TNRC6B	100	96.141	Octodon_degus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	94.221	ENSOCUG00000016128	TNRC6B	100	94.056	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	90.700	ENSOGAG00000011096	TNRC6B	99	90.005	Otolemur_garnettii
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	93.757	ENSOARG00000017238	TNRC6B	100	93.538	Ovis_aries
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	95.515	ENSPPAG00000028514	TNRC6B	100	95.514	Pan_paniscus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	91.582	ENSPPRG00000017741	TNRC6B	100	94.824	Panthera_pardus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	86.648	ENSPTIG00000022064	TNRC6B	98	88.526	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	94.866	ENSPTRG00000047826	TNRC6B	100	95.873	Pan_troglodytes
MGP_CAROLIEiJ_G0020043	Tnrc6b	96	86.976	ENSPANG00000009271	TNRC6B	99	91.200	Papio_anubis
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	86.922	ENSPSIG00000005318	TNRC6B	99	86.979	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	97.463	ENSPEMG00000011403	Tnrc6b	100	97.463	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	85.690	ENSPCIG00000020347	TNRC6B	99	85.804	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020043	Tnrc6b	67	45.472	ENSPFOG00000006033	-	95	41.684	Poecilia_formosa
MGP_CAROLIEiJ_G0020043	Tnrc6b	76	53.317	ENSPMEG00000006371	-	68	54.265	Poecilia_mexicana
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	92.090	ENSPPYG00000011849	TNRC6B	99	92.260	Pongo_abelii
MGP_CAROLIEiJ_G0020043	Tnrc6b	77	87.912	ENSPCAG00000008739	TNRC6B	77	88.561	Procavia_capensis
MGP_CAROLIEiJ_G0020043	Tnrc6b	99	93.993	ENSPCOG00000020790	TNRC6B	100	95.873	Propithecus_coquereli
MGP_CAROLIEiJ_G0020043	Tnrc6b	93	94.397	ENSPVAG00000004975	TNRC6B	94	94.397	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020043	Tnrc6b	63	48.553	ENSPNAG00000011713	tnrc6b	78	44.782	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	97.968	ENSRNOG00000024907	Tnrc6b	100	97.968	Rattus_norvegicus
MGP_CAROLIEiJ_G0020043	Tnrc6b	95	95.046	ENSRBIG00000035576	TNRC6B	99	95.524	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	95.100	ENSRROG00000031135	TNRC6B	100	95.524	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	91.966	ENSSBOG00000029743	TNRC6B	96	95.755	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	81.788	ENSSHAG00000009692	TNRC6B	99	80.673	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020043	Tnrc6b	65	84.746	ENSSARG00000007971	-	70	84.746	Sorex_araneus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	94.496	ENSSSCG00000000078	TNRC6B	99	94.294	Sus_scrofa
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	88.773	ENSTTRG00000011465	TNRC6B	100	88.883	Tursiops_truncatus
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	92.995	ENSUAMG00000007174	TNRC6B	99	93.478	Ursus_americanus
MGP_CAROLIEiJ_G0020043	Tnrc6b	97	94.527	ENSUMAG00000014336	TNRC6B	100	94.277	Ursus_maritimus
MGP_CAROLIEiJ_G0020043	Tnrc6b	69	89.718	ENSVPAG00000001467	TNRC6B	75	88.508	Vicugna_pacos
MGP_CAROLIEiJ_G0020043	Tnrc6b	100	94.719	ENSVVUG00000007064	TNRC6B	100	94.822	Vulpes_vulpes