EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020427 (Gene tree)
Gene ID: 110311201
Gene Symbol: Rbfox1
Alias: A2bp|A2bp1|FOX1|HRNBP1
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 602543 bases
Position: chr16:3068624-3671166
Accession: 110311201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0040274	Fox-1_C	PF12414.8	1.9e-42	1	1
MGP_CAROLIEiJ_P0040275	Fox-1_C	PF12414.8	2.2e-40	1	1
MGP_CAROLIEiJ_P0040275	RRM_1	PF00076.22	5.3e-18	1	1
MGP_CAROLIEiJ_P0040274	RRM_1	PF00076.22	5.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0040275	-	4084	XM_021184440	MGP_CAROLIEiJ_P0040275	417 (aa)	XP_021040099	UPI00042ABD7D
MGP_CAROLIEiJ_T0040274	-	1191	-	MGP_CAROLIEiJ_P0040274	396 (aa)	-	UPI000A3127CD
MGP_CAROLIEiJ_T0040276	-	1275	-	MGP_CAROLIEiJ_P0040276	424 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0020427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020427's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0020427	Rbfox1	100	62.287	MGP_CAROLIEiJ_G0019957	Rbfox2	100	61.800
MGP_CAROLIEiJ_G0020427	Rbfox1	91	64.578	MGP_CAROLIEiJ_G0017487	Rbfox3	100	71.930

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020427	Rbfox1	100	98.489	ENSG00000078328	RBFOX1	100	98.489	Homo_sapiens
MGP_CAROLIEiJ_G0020427	Rbfox1	100	75.422	ENSAPOG00000003197	rbfox1	100	75.904	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0020427	Rbfox1	60	94.400	ENSAMEG00000008605	RBFOX1	100	94.400	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020427	Rbfox1	67	64.527	ENSACIG00000005478	rbfox1	68	64.983	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0020427	Rbfox1	73	70.033	ENSAOCG00000008283	rbfox1	99	69.401	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0020427	Rbfox1	95	70.899	ENSAPEG00000010636	rbfox1	100	70.789	Amphiprion_percula
MGP_CAROLIEiJ_G0020427	Rbfox1	73	68.608	ENSATEG00000007513	rbfox1	99	68.025	Anabas_testudineus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	93.830	ENSAPLG00000013263	RBFOX1	97	93.830	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020427	Rbfox1	99	86.717	ENSACAG00000004013	RBFOX1	100	86.717	Anolis_carolinensis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	94.226	ENSANAG00000029527	RBFOX1	98	97.449	Aotus_nancymaae
MGP_CAROLIEiJ_G0020427	Rbfox1	56	87.838	ENSAMXG00000002431	rbfox1	65	87.946	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020427	Rbfox1	99	94.670	ENSBTAG00000007210	RBFOX1	100	96.543	Bos_taurus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.368	ENSCJAG00000017351	RBFOX1	100	97.368	Callithrix_jacchus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSCAFG00000019082	RBFOX1	100	97.847	Canis_familiaris
MGP_CAROLIEiJ_G0020427	Rbfox1	86	82.834	ENSCAFG00020024881	RBFOX1	83	97.297	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020427	Rbfox1	99	94.670	ENSCHIG00000023549	RBFOX1	100	96.543	Capra_hircus
MGP_CAROLIEiJ_G0020427	Rbfox1	97	96.860	ENSTSYG00000005334	RBFOX1	100	97.686	Carlito_syrichta
MGP_CAROLIEiJ_G0020427	Rbfox1	100	96.890	ENSCAPG00000017669	RBFOX1	100	97.423	Cavia_aperea
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.481	ENSCPOG00000011314	RBFOX1	100	97.481	Cavia_porcellus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.368	ENSCCAG00000023031	RBFOX1	100	97.368	Cebus_capucinus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSCATG00000033816	RBFOX1	100	97.847	Cercocebus_atys
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.481	ENSCLAG00000012761	RBFOX1	100	97.481	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020427	Rbfox1	88	97.340	ENSCSAG00000008739	RBFOX1	100	97.340	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	75.837	ENSCHOG00000012843	RBFOX1	100	75.837	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0020427	Rbfox1	98	94.072	ENSCPBG00000026626	RBFOX1	100	92.553	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSCANG00000033125	RBFOX1	100	97.847	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.760	ENSCGRG00001013729	Rbfox1	100	99.760	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.760	ENSCGRG00000003272	Rbfox1	100	99.760	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020427	Rbfox1	95	71.285	ENSCSEG00000008840	rbfox1	100	71.285	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	80.402	ENSDARG00000014746	rbfox1	100	85.854	Danio_rerio
MGP_CAROLIEiJ_G0020427	Rbfox1	98	97.436	ENSDNOG00000043612	RBFOX1	94	97.436	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	93.300	ENSDORG00000010024	Rbfox1	100	93.300	Dipodomys_ordii
MGP_CAROLIEiJ_G0020427	Rbfox1	100	78.417	ENSETEG00000003771	RBFOX1	100	78.417	Echinops_telfairi
MGP_CAROLIEiJ_G0020427	Rbfox1	98	98.201	ENSEASG00005011599	RBFOX1	98	97.959	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020427	Rbfox1	97	97.531	ENSECAG00000012667	RBFOX1	100	96.809	Equus_caballus
MGP_CAROLIEiJ_G0020427	Rbfox1	84	66.390	ENSELUG00000013096	rbfox1	100	52.393	Esox_lucius
MGP_CAROLIEiJ_G0020427	Rbfox1	98	97.943	ENSFCAG00000025322	RBFOX1	100	97.074	Felis_catus
MGP_CAROLIEiJ_G0020427	Rbfox1	83	91.592	ENSFALG00000004027	RBFOX1	100	91.592	Ficedula_albicollis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.985	ENSFDAG00000007388	RBFOX1	100	97.985	Fukomys_damarensis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	92.584	ENSGALG00000034325	RBFOX1	100	92.584	Gallus_gallus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	91.866	ENSGAGG00000023681	RBFOX1	100	94.164	Gopherus_agassizii
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSGGOG00000016871	-	100	97.847	Gorilla_gorilla
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.733	ENSHGLG00000016944	RBFOX1	100	97.733	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.733	ENSHGLG00100003272	RBFOX1	100	97.733	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020427	Rbfox1	85	70.893	ENSHCOG00000016419	rbfox1	91	70.977	Hippocampus_comes
MGP_CAROLIEiJ_G0020427	Rbfox1	95	83.245	ENSIPUG00000015215	rbfox1	100	83.245	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.229	ENSSTOG00000000322	RBFOX1	100	97.229	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	94.724	ENSJJAG00000002575	Rbfox1	100	94.724	Jaculus_jaculus
MGP_CAROLIEiJ_G0020427	Rbfox1	99	72.705	ENSLBEG00000014659	rbfox1	99	72.457	Labrus_bergylta
MGP_CAROLIEiJ_G0020427	Rbfox1	98	86.260	ENSLOCG00000006675	rbfox1	99	86.260	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020427	Rbfox1	78	98.701	ENSLAFG00000011480	RBFOX1	100	99.026	Loxodonta_africana
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	ENSMFAG00000036447	RBFOX1	100	97.608	Macaca_fascicularis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	ENSMMUG00000003458	RBFOX1	100	97.838	Macaca_mulatta
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	ENSMNEG00000032034	RBFOX1	100	97.608	Macaca_nemestrina
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSMLEG00000015382	RBFOX1	100	97.847	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020427	Rbfox1	95	74.490	ENSMAMG00000003142	rbfox1	100	75.000	Mastacembelus_armatus
MGP_CAROLIEiJ_G0020427	Rbfox1	71	88.256	ENSMGAG00000008606	RBFOX1	98	87.063	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020427	Rbfox1	99	58.481	ENSMAUG00000020570	Rbfox1	99	57.722	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	93.995	ENSMICG00000034286	RBFOX1	100	94.695	Microcebus_murinus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.760	ENSMOCG00000020932	Rbfox1	100	99.760	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020427	Rbfox1	86	70.435	ENSMMOG00000009716	rbfox1	100	59.850	Mola_mola
MGP_CAROLIEiJ_G0020427	Rbfox1	83	96.610	ENSMODG00000005826	RBFOX1	100	96.610	Monodelphis_domestica
MGP_CAROLIEiJ_G0020427	Rbfox1	100	75.550	ENSMALG00000003337	rbfox1	100	75.550	Monopterus_albus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.760	ENSMUSG00000008658	Rbfox1	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	100.000	MGP_PahariEiJ_G0016135	Rbfox1	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.528	MGP_SPRETEiJ_G0021321	Rbfox1	100	99.528	Mus_spretus
MGP_CAROLIEiJ_G0020427	Rbfox1	86	97.814	ENSMPUG00000014822	RBFOX1	93	97.814	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020427	Rbfox1	78	99.349	ENSMLUG00000015896	RBFOX1	100	99.349	Myotis_lucifugus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	98.565	ENSNGAG00000023276	Rbfox1	100	98.565	Nannospalax_galili
MGP_CAROLIEiJ_G0020427	Rbfox1	98	60.482	ENSNBRG00000011084	rbfox1	98	59.302	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	ENSNLEG00000010017	-	100	97.608	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020427	Rbfox1	100	80.144	ENSMEUG00000012525	RBFOX1	100	80.144	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020427	Rbfox1	100	79.426	ENSOPRG00000006199	-	100	78.230	Ochotona_princeps
MGP_CAROLIEiJ_G0020427	Rbfox1	100	96.977	ENSODEG00000013166	RBFOX1	100	96.977	Octodon_degus
MGP_CAROLIEiJ_G0020427	Rbfox1	88	94.415	ENSOANG00000002379	RBFOX1	100	94.415	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0020427	Rbfox1	57	92.889	ENSOCUG00000001205	-	100	92.889	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	96.474	ENSOGAG00000025535	RBFOX1	100	96.474	Otolemur_garnettii
MGP_CAROLIEiJ_G0020427	Rbfox1	63	84.337	ENSOARG00000005135	RBFOX1	100	83.600	Ovis_aries
MGP_CAROLIEiJ_G0020427	Rbfox1	98	98.454	ENSPPAG00000036238	-	100	98.454	Pan_paniscus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	ENSPPRG00000006546	RBFOX1	100	97.608	Panthera_pardus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	85.642	ENSPTIG00000021154	RBFOX1	99	85.861	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSPTRG00000007744	RBFOX1	100	97.847	Pan_troglodytes
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSPANG00000026500	RBFOX1	100	97.847	Papio_anubis
MGP_CAROLIEiJ_G0020427	Rbfox1	73	83.103	ENSPKIG00000019353	rbfox1	88	82.392	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020427	Rbfox1	100	81.454	ENSPKIG00000009667	-	99	81.402	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020427	Rbfox1	99	93.130	ENSPSIG00000006523	RBFOX1	98	93.130	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	100.000	ENSPEMG00000017607	Rbfox1	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020427	Rbfox1	73	92.414	ENSPCIG00000026887	RBFOX1	100	92.414	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020427	Rbfox1	86	98.361	ENSPPYG00000007079	-	93	98.361	Pongo_abelii
MGP_CAROLIEiJ_G0020427	Rbfox1	90	89.418	ENSPCAG00000002630	RBFOX1	100	89.418	Procavia_capensis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.368	ENSPCOG00000025687	RBFOX1	100	97.368	Propithecus_coquereli
MGP_CAROLIEiJ_G0020427	Rbfox1	100	93.301	ENSPVAG00000013467	RBFOX1	100	93.301	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020427	Rbfox1	95	81.313	ENSPNAG00000023109	rbfox1	100	81.313	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.362	ENSRNOG00000002827	Rbfox1	100	97.606	Rattus_norvegicus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	98.454	ENSRBIG00000044478	RBFOX1	100	98.454	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.847	ENSRROG00000044411	RBFOX1	100	97.847	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020427	Rbfox1	99	96.947	ENSSBOG00000033726	RBFOX1	98	96.947	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020427	Rbfox1	100	92.191	ENSSHAG00000009257	RBFOX1	100	92.191	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020427	Rbfox1	88	70.225	ENSSFOG00015009955	-	87	67.819	Scleropages_formosus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	67.939	ENSSFOG00015023675	rbfox1	93	87.778	Scleropages_formosus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	76.355	ENSSMAG00000015505	rbfox1	96	72.577	Scophthalmus_maximus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	73.980	ENSSDUG00000016413	rbfox1	99	73.724	Seriola_dumerili
MGP_CAROLIEiJ_G0020427	Rbfox1	85	71.765	ENSSLDG00000009353	rbfox1	97	71.429	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0020427	Rbfox1	85	82.647	ENSSPUG00000009732	RBFOX1	99	71.466	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020427	Rbfox1	98	75.616	ENSSPAG00000009723	rbfox1	100	75.369	Stegastes_partitus
MGP_CAROLIEiJ_G0020427	Rbfox1	97	97.037	ENSSSCG00000007917	RBFOX1	100	97.458	Sus_scrofa
MGP_CAROLIEiJ_G0020427	Rbfox1	98	93.830	ENSTGUG00000004562	RBFOX1	100	93.830	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020427	Rbfox1	98	75.123	ENSTRUG00000020940	rbfox1	99	75.123	Takifugu_rubripes
MGP_CAROLIEiJ_G0020427	Rbfox1	67	57.006	ENSTNIG00000002567	rbfox1	100	58.599	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0020427	Rbfox1	81	86.207	ENSTBEG00000009169	-	81	86.207	Tupaia_belangeri
MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.129	ENSTTRG00000005700	RBFOX1	100	97.129	Tursiops_truncatus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	91.688	ENSUAMG00000024633	RBFOX1	100	91.688	Ursus_americanus
MGP_CAROLIEiJ_G0020427	Rbfox1	100	82.872	ENSUMAG00000003579	RBFOX1	100	82.872	Ursus_maritimus
MGP_CAROLIEiJ_G0020427	Rbfox1	81	99.026	ENSVPAG00000001284	RBFOX1	81	99.026	Vicugna_pacos
MGP_CAROLIEiJ_G0020427	Rbfox1	98	97.943	ENSVVUG00000017311	RBFOX1	100	97.074	Vulpes_vulpes