EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020466 (Gene tree)
Gene ID: 110311785
Gene Symbol: Parn
Alias: 1200003I18Rik|DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 130026 bases
Position: chr16:10030872-10160897
Accession: 110311785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0040424	R3H	PF01424.22	5.3e-07	1	1
MGP_CAROLIEiJ_P0040424	RNA_bind	PF08675.11	2.7e-33	1	1
MGP_CAROLIEiJ_P0040424	CAF1	PF04857.20	1.1e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0040424	-	2925	XM_021185317	MGP_CAROLIEiJ_P0040424	624 (aa)	XP_021040976	UPI000A315D43

Gene Model

Click here to download MGP_CAROLIEiJ_G0020466's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020466's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020466	Parn	100	86.541	ENSG00000140694	PARN	100	94.915	Homo_sapiens
MGP_CAROLIEiJ_G0020466	Parn	100	85.759	ENSAMEG00000011208	PARN	100	85.759	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020466	Parn	88	71.583	ENSACIG00000000619	parn	85	71.583	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0020466	Parn	89	72.840	ENSAOCG00000003465	parn	81	72.840	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0020466	Parn	78	73.535	ENSAPEG00000010661	parn	95	73.535	Amphiprion_percula
MGP_CAROLIEiJ_G0020466	Parn	99	67.079	ENSATEG00000004661	parn	82	73.252	Anabas_testudineus
MGP_CAROLIEiJ_G0020466	Parn	99	79.937	ENSAPLG00000013914	PARN	99	79.937	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020466	Parn	100	75.229	ENSACAG00000004973	PARN	100	75.382	Anolis_carolinensis
MGP_CAROLIEiJ_G0020466	Parn	100	85.446	ENSANAG00000031516	PARN	100	94.915	Aotus_nancymaae
MGP_CAROLIEiJ_G0020466	Parn	91	72.414	ENSACLG00000004742	parn	84	72.414	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0020466	Parn	89	72.340	ENSAMXG00000012390	parn	87	74.011	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020466	Parn	100	83.229	ENSBTAG00000018097	PARN	100	85.095	Bos_taurus
MGP_CAROLIEiJ_G0020466	Parn	100	85.915	ENSCJAG00000015866	PARN	100	94.915	Callithrix_jacchus
MGP_CAROLIEiJ_G0020466	Parn	100	84.953	ENSCAFG00000018795	PARN	100	84.953	Canis_familiaris
MGP_CAROLIEiJ_G0020466	Parn	100	85.266	ENSCAFG00020024126	PARN	100	85.266	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020466	Parn	100	86.050	ENSCHIG00000018143	PARN	100	86.050	Capra_hircus
MGP_CAROLIEiJ_G0020466	Parn	74	59.875	ENSCAPG00000007984	PARN	78	59.875	Cavia_aperea
MGP_CAROLIEiJ_G0020466	Parn	100	84.326	ENSCPOG00000002263	PARN	100	84.326	Cavia_porcellus
MGP_CAROLIEiJ_G0020466	Parn	100	85.915	ENSCCAG00000030367	PARN	100	94.915	Cebus_capucinus
MGP_CAROLIEiJ_G0020466	Parn	100	80.380	ENSCATG00000041368	PARN	100	94.915	Cercocebus_atys
MGP_CAROLIEiJ_G0020466	Parn	100	84.483	ENSCLAG00000015406	PARN	99	84.483	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020466	Parn	100	86.698	ENSCSAG00000008142	PARN	100	86.698	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020466	Parn	99	68.938	ENSCHOG00000007014	PARN	100	68.938	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0020466	Parn	85	81.250	ENSCPBG00000006609	PARN	94	81.538	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020466	Parn	81	44.007	ENSCING00000010142	-	99	43.715	Ciona_intestinalis
MGP_CAROLIEiJ_G0020466	Parn	100	75.878	ENSCANG00000028849	-	100	94.915	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020466	Parn	100	92.320	ENSCGRG00001012096	Parn	100	92.320	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020466	Parn	100	92.320	ENSCGRG00000004939	Parn	100	92.320	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020466	Parn	89	70.442	ENSCSEG00000002064	parn	100	59.729	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0020466	Parn	89	73.050	ENSCVAG00000014848	parn	82	73.050	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0020466	Parn	100	62.712	ENSDARG00000102634	parn	100	60.185	Danio_rerio
MGP_CAROLIEiJ_G0020466	Parn	100	85.893	ENSDNOG00000000833	PARN	98	88.309	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020466	Parn	74	84.411	ENSETEG00000014828	-	69	84.411	Echinops_telfairi
MGP_CAROLIEiJ_G0020466	Parn	100	86.834	ENSEASG00005011400	PARN	100	86.834	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020466	Parn	100	86.991	ENSECAG00000017792	PARN	100	86.991	Equus_caballus
MGP_CAROLIEiJ_G0020466	Parn	86	75.113	ENSEEUG00000010370	PARN	86	75.113	Erinaceus_europaeus
MGP_CAROLIEiJ_G0020466	Parn	90	71.429	ENSELUG00000013139	parn	75	71.429	Esox_lucius
MGP_CAROLIEiJ_G0020466	Parn	100	85.737	ENSFCAG00000044961	PARN	100	94.915	Felis_catus
MGP_CAROLIEiJ_G0020466	Parn	99	79.398	ENSFALG00000003911	PARN	98	79.398	Ficedula_albicollis
MGP_CAROLIEiJ_G0020466	Parn	100	84.326	ENSFDAG00000009234	PARN	100	84.326	Fukomys_damarensis
MGP_CAROLIEiJ_G0020466	Parn	91	65.254	ENSFHEG00000013738	parn	92	74.576	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0020466	Parn	86	73.665	ENSGMOG00000003231	parn	99	73.665	Gadus_morhua
MGP_CAROLIEiJ_G0020466	Parn	100	78.997	ENSGALG00000003091	PARN	100	78.997	Gallus_gallus
MGP_CAROLIEiJ_G0020466	Parn	89	72.935	ENSGAFG00000011061	parn	83	72.145	Gambusia_affinis
MGP_CAROLIEiJ_G0020466	Parn	92	70.769	ENSGACG00000019501	parn	100	67.773	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0020466	Parn	51	76.687	ENSGAGG00000023281	PARN	83	76.687	Gopherus_agassizii
MGP_CAROLIEiJ_G0020466	Parn	97	86.473	ENSGGOG00000025224	PARN	100	94.915	Gorilla_gorilla
MGP_CAROLIEiJ_G0020466	Parn	91	72.241	ENSHBUG00000017906	parn	90	74.674	Haplochromis_burtoni
MGP_CAROLIEiJ_G0020466	Parn	100	85.266	ENSHGLG00000010886	PARN	100	85.266	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020466	Parn	100	85.266	ENSHGLG00100014659	PARN	100	85.266	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020466	Parn	83	71.834	ENSHCOG00000008683	parn	91	71.834	Hippocampus_comes
MGP_CAROLIEiJ_G0020466	Parn	89	61.471	ENSIPUG00000012401	parn	84	61.471	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020466	Parn	100	85.893	ENSSTOG00000007519	PARN	100	85.893	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020466	Parn	100	86.688	ENSJJAG00000023049	Parn	100	86.688	Jaculus_jaculus
MGP_CAROLIEiJ_G0020466	Parn	91	72.193	ENSKMAG00000009462	parn	83	72.021	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0020466	Parn	91	71.902	ENSLBEG00000009167	parn	89	71.902	Labrus_bergylta
MGP_CAROLIEiJ_G0020466	Parn	79	77.183	ENSLACG00000004207	PARN	100	75.472	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020466	Parn	92	74.570	ENSLOCG00000000715	parn	85	74.355	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020466	Parn	100	86.054	ENSLAFG00000015036	PARN	100	86.054	Loxodonta_africana
MGP_CAROLIEiJ_G0020466	Parn	100	81.875	ENSMFAG00000044852	PARN	100	94.915	Macaca_fascicularis
MGP_CAROLIEiJ_G0020466	Parn	100	86.385	ENSMMUG00000018849	PARN	100	94.915	Macaca_mulatta
MGP_CAROLIEiJ_G0020466	Parn	100	86.541	ENSMNEG00000045108	PARN	100	94.915	Macaca_nemestrina
MGP_CAROLIEiJ_G0020466	Parn	100	86.698	ENSMLEG00000031743	PARN	100	94.915	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020466	Parn	89	72.920	ENSMAMG00000006939	parn	82	72.920	Mastacembelus_armatus
MGP_CAROLIEiJ_G0020466	Parn	91	72.241	ENSMZEG00005013590	parn	95	72.085	Maylandia_zebra
MGP_CAROLIEiJ_G0020466	Parn	95	79.112	ENSMGAG00000001004	PARN	95	79.112	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020466	Parn	100	86.572	ENSMAUG00000008025	Parn	100	86.572	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020466	Parn	100	87.618	ENSMICG00000016053	PARN	100	96.610	Microcebus_murinus
MGP_CAROLIEiJ_G0020466	Parn	78	95.277	ENSMOCG00000022211	Parn	100	95.277	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020466	Parn	100	65.723	ENSMMOG00000011333	parn	100	65.409	Mola_mola
MGP_CAROLIEiJ_G0020466	Parn	78	88.508	ENSMODG00000004915	PARN	99	88.508	Monodelphis_domestica
MGP_CAROLIEiJ_G0020466	Parn	84	76.164	ENSMALG00000019426	parn	91	76.164	Monopterus_albus
MGP_CAROLIEiJ_G0020466	Parn	100	98.878	ENSMUSG00000022685	Parn	100	98.878	Mus_musculus
MGP_CAROLIEiJ_G0020466	Parn	51	32.209	ENSMUSG00000073460	Pnldc1	97	31.077	Mus_musculus
MGP_CAROLIEiJ_G0020466	Parn	100	96.635	MGP_PahariEiJ_G0016172	Parn	100	96.635	Mus_pahari
MGP_CAROLIEiJ_G0020466	Parn	100	99.038	MGP_SPRETEiJ_G0021361	Parn	100	99.038	Mus_spretus
MGP_CAROLIEiJ_G0020466	Parn	100	86.050	ENSMPUG00000014464	PARN	100	86.050	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020466	Parn	78	88.664	ENSMLUG00000005414	PARN	100	88.664	Myotis_lucifugus
MGP_CAROLIEiJ_G0020466	Parn	84	74.532	ENSNBRG00000006805	parn	90	74.532	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0020466	Parn	100	86.228	ENSNLEG00000010241	PARN	100	94.915	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020466	Parn	91	69.167	ENSMEUG00000008178	-	91	69.167	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020466	Parn	99	81.300	ENSOPRG00000012187	PARN	100	81.300	Ochotona_princeps
MGP_CAROLIEiJ_G0020466	Parn	100	77.760	ENSODEG00000001617	PARN	100	77.760	Octodon_degus
MGP_CAROLIEiJ_G0020466	Parn	100	67.388	ENSONIG00000000151	parn	100	67.388	Oreochromis_niloticus
MGP_CAROLIEiJ_G0020466	Parn	60	79.481	ENSOANG00000020155	-	97	80.526	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0020466	Parn	99	84.882	ENSOCUG00000000322	PARN	100	84.882	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020466	Parn	95	69.435	ENSORLG00020010313	parn	88	69.435	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0020466	Parn	95	68.937	ENSORLG00015000300	parn	88	68.937	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0020466	Parn	100	62.903	ENSOMEG00000019555	parn	97	63.636	Oryzias_melastigma
MGP_CAROLIEiJ_G0020466	Parn	78	88.798	ENSOGAG00000014626	PARN	100	88.798	Otolemur_garnettii
MGP_CAROLIEiJ_G0020466	Parn	78	91.093	ENSOARG00000007574	PARN	100	91.093	Ovis_aries
MGP_CAROLIEiJ_G0020466	Parn	100	86.228	ENSPPAG00000031438	PARN	100	94.915	Pan_paniscus
MGP_CAROLIEiJ_G0020466	Parn	100	85.580	ENSPPRG00000018583	PARN	100	94.915	Panthera_pardus
MGP_CAROLIEiJ_G0020466	Parn	100	85.580	ENSPTIG00000012135	PARN	100	94.915	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020466	Parn	100	86.228	ENSPTRG00000007792	PARN	100	94.915	Pan_troglodytes
MGP_CAROLIEiJ_G0020466	Parn	100	83.412	ENSPANG00000020099	PARN	100	94.915	Papio_anubis
MGP_CAROLIEiJ_G0020466	Parn	91	72.696	ENSPKIG00000022807	parn	91	68.259	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020466	Parn	95	81.488	ENSPSIG00000014804	PARN	100	79.029	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020466	Parn	81	75.439	ENSPMGG00000014431	parn	80	69.896	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0020466	Parn	100	89.904	ENSPEMG00000018439	Parn	100	89.904	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020466	Parn	82	64.943	ENSPMAG00000003956	parn	99	64.943	Petromyzon_marinus
MGP_CAROLIEiJ_G0020466	Parn	67	80.142	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020466	Parn	90	72.300	ENSPFOG00000012823	parn	83	72.289	Poecilia_formosa
MGP_CAROLIEiJ_G0020466	Parn	90	72.474	ENSPLAG00000006395	parn	83	72.461	Poecilia_latipinna
MGP_CAROLIEiJ_G0020466	Parn	90	72.474	ENSPMEG00000007711	parn	83	72.461	Poecilia_mexicana
MGP_CAROLIEiJ_G0020466	Parn	90	72.125	ENSPREG00000000147	parn	83	72.117	Poecilia_reticulata
MGP_CAROLIEiJ_G0020466	Parn	100	85.959	ENSPPYG00000007123	PARN	100	85.959	Pongo_abelii
MGP_CAROLIEiJ_G0020466	Parn	95	74.876	ENSPCAG00000001741	PARN	100	74.876	Procavia_capensis
MGP_CAROLIEiJ_G0020466	Parn	100	84.796	ENSPCOG00000019292	PARN	100	96.610	Propithecus_coquereli
MGP_CAROLIEiJ_G0020466	Parn	99	81.933	ENSPVAG00000002547	PARN	100	81.933	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020466	Parn	91	72.241	ENSPNYG00000006835	parn	95	68.959	Pundamilia_nyererei
MGP_CAROLIEiJ_G0020466	Parn	82	72.780	ENSPNAG00000018905	parn	84	72.780	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020466	Parn	51	32.209	ENSRNOG00000023140	Pnldc1	89	31.077	Rattus_norvegicus
MGP_CAROLIEiJ_G0020466	Parn	100	92.212	ENSRNOG00000002912	Parn	100	97.030	Rattus_norvegicus
MGP_CAROLIEiJ_G0020466	Parn	52	84.384	ENSRBIG00000018726	PARN	100	84.384	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020466	Parn	52	84.384	ENSRROG00000011162	-	100	84.384	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020466	Parn	100	84.351	ENSSBOG00000034726	PARN	100	94.915	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020466	Parn	66	86.842	ENSSHAG00000008493	PARN	94	86.842	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020466	Parn	96	71.144	ENSSFOG00015014165	parn	94	72.600	Scleropages_formosus
MGP_CAROLIEiJ_G0020466	Parn	100	61.912	ENSSMAG00000000685	parn	100	61.755	Scophthalmus_maximus
MGP_CAROLIEiJ_G0020466	Parn	89	72.105	ENSSDUG00000014555	parn	82	72.743	Seriola_dumerili
MGP_CAROLIEiJ_G0020466	Parn	81	89.171	ENSSARG00000014339	PARN	89	89.171	Sorex_araneus
MGP_CAROLIEiJ_G0020466	Parn	100	79.624	ENSSPUG00000007719	PARN	100	79.624	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020466	Parn	91	73.010	ENSSPAG00000007095	parn	92	69.381	Stegastes_partitus
MGP_CAROLIEiJ_G0020466	Parn	100	85.737	ENSSSCG00000007878	PARN	89	85.737	Sus_scrofa
MGP_CAROLIEiJ_G0020466	Parn	55	31.356	ENSTGUG00000011418	PNLDC1	69	30.508	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020466	Parn	99	79.147	ENSTGUG00000004971	PARN	99	79.147	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020466	Parn	100	67.762	ENSTNIG00000008252	parn	100	67.919	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0020466	Parn	91	73.748	ENSTBEG00000010407	PARN	100	73.748	Tupaia_belangeri
MGP_CAROLIEiJ_G0020466	Parn	99	80.666	ENSTTRG00000002843	PARN	100	80.666	Tursiops_truncatus
MGP_CAROLIEiJ_G0020466	Parn	73	73.820	ENSUAMG00000008283	PARN	90	77.752	Ursus_americanus
MGP_CAROLIEiJ_G0020466	Parn	100	86.050	ENSUMAG00000004527	PARN	100	86.050	Ursus_maritimus
MGP_CAROLIEiJ_G0020466	Parn	96	82.843	ENSVPAG00000008968	PARN	99	82.843	Vicugna_pacos
MGP_CAROLIEiJ_G0020466	Parn	100	85.423	ENSVVUG00000019509	PARN	100	85.423	Vulpes_vulpes
MGP_CAROLIEiJ_G0020466	Parn	100	71.607	ENSXETG00000010994	parn	99	79.619	Xenopus_tropicalis
MGP_CAROLIEiJ_G0020466	Parn	89	69.136	ENSXCOG00000015990	parn	96	68.284	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0020466	Parn	91	71.478	ENSXMAG00000014783	parn	83	71.478	Xiphophorus_maculatus