EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020483 (Gene tree)
Gene ID: 110311690
Gene Symbol: Snai2
Alias: Slug|Slugh|Snail2
Full Name: snail family transcriptional repressor 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 3525 bases
Position: chr16:11284588-11288112
Accession: 110311690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0040496	zf-C2H2	PF00096.26	1.6e-27	1	5
MGP_CAROLIEiJ_P0040496	zf-C2H2	PF00096.26	1.6e-27	2	5
MGP_CAROLIEiJ_P0040496	zf-C2H2	PF00096.26	1.6e-27	3	5
MGP_CAROLIEiJ_P0040496	zf-C2H2	PF00096.26	1.6e-27	4	5
MGP_CAROLIEiJ_P0040496	zf-C2H2	PF00096.26	1.6e-27	5	5
MGP_CAROLIEiJ_P0040496	zf-met	PF12874.7	3.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0040496	-	2003	-	MGP_CAROLIEiJ_P0040496	269 (aa)	XP_021040815	UPI000A30AF62

Gene Model

Click here to download MGP_CAROLIEiJ_G0020483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020483's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0020483	Snai2	52	43.077	MGP_CAROLIEiJ_G0031203	Zfp882	87	43.077
MGP_CAROLIEiJ_G0020483	Snai2	86	50.000	MGP_CAROLIEiJ_G0022445	Zfp236	55	37.584
MGP_CAROLIEiJ_G0020483	Snai2	57	42.157	MGP_CAROLIEiJ_G0028463	Prdm5	69	40.876
MGP_CAROLIEiJ_G0020483	Snai2	55	38.750	MGP_CAROLIEiJ_G0016391	Zfp672	90	38.750
MGP_CAROLIEiJ_G0020483	Snai2	99	45.918	MGP_CAROLIEiJ_G0031662	Snai3	99	45.862
MGP_CAROLIEiJ_G0020483	Snai2	50	38.776	MGP_CAROLIEiJ_G0033101	Zic3	64	38.849
MGP_CAROLIEiJ_G0020483	Snai2	99	52.708	MGP_CAROLIEiJ_G0024709	Snai1	98	50.360

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSG00000019549	SNAI2	100	95.911	Homo_sapiens
MGP_CAROLIEiJ_G0020483	Snai2	99	48.630	ENSG00000185669	SNAI3	99	49.655	Homo_sapiens
MGP_CAROLIEiJ_G0020483	Snai2	100	96.654	ENSAMEG00000009606	SNAI2	100	96.654	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020483	Snai2	99	47.697	ENSANAG00000032748	SNAI3	99	46.624	Aotus_nancymaae
MGP_CAROLIEiJ_G0020483	Snai2	100	95.167	ENSANAG00000021163	SNAI2	100	95.167	Aotus_nancymaae
MGP_CAROLIEiJ_G0020483	Snai2	100	91.822	ENSBTAG00000013227	SNAI2	100	91.822	Bos_taurus
MGP_CAROLIEiJ_G0020483	Snai2	99	45.638	ENSBTAG00000017528	SNAI3	99	45.875	Bos_taurus
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCJAG00000013499	SNAI2	100	95.911	Callithrix_jacchus
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCAFG00000006638	SNAI2	100	95.911	Canis_familiaris
MGP_CAROLIEiJ_G0020483	Snai2	99	48.980	ENSCAFG00000029458	SNAI3	99	48.973	Canis_familiaris
MGP_CAROLIEiJ_G0020483	Snai2	99	49.320	ENSCAFG00020004719	SNAI3	99	49.315	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCAFG00020015384	SNAI2	100	95.911	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020483	Snai2	100	91.450	ENSCHIG00000024410	SNAI2	100	91.450	Capra_hircus
MGP_CAROLIEiJ_G0020483	Snai2	99	46.205	ENSCHIG00000018087	SNAI3	99	46.844	Capra_hircus
MGP_CAROLIEiJ_G0020483	Snai2	57	68.750	ENSTSYG00000025594	SNAI3	55	68.750	Carlito_syrichta
MGP_CAROLIEiJ_G0020483	Snai2	90	95.455	ENSTSYG00000030892	SNAI2	90	95.455	Carlito_syrichta
MGP_CAROLIEiJ_G0020483	Snai2	83	95.089	ENSCAPG00000013078	SNAI2	100	95.089	Cavia_aperea
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCCAG00000024100	SNAI2	100	95.911	Cebus_capucinus
MGP_CAROLIEiJ_G0020483	Snai2	99	49.831	ENSCATG00000031714	SNAI3	99	48.013	Cercocebus_atys
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCATG00000028656	SNAI2	100	95.911	Cercocebus_atys
MGP_CAROLIEiJ_G0020483	Snai2	100	96.654	ENSCLAG00000011797	SNAI2	100	96.654	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCSAG00000014787	SNAI2	100	95.911	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020483	Snai2	100	91.822	ENSCPBG00000020255	SNAI2	100	91.822	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020483	Snai2	99	52.862	ENSCPBG00000023474	SNAI3	99	52.862	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020483	Snai2	50	65.672	ENSCSAVG00000009819	-	69	65.672	Ciona_savignyi
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSCANG00000029656	SNAI2	100	95.911	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020483	Snai2	100	97.770	ENSCGRG00001013674	Snai2	100	97.770	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020483	Snai2	99	47.751	ENSCGRG00001011389	Snai3	99	48.084	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020483	Snai2	100	97.770	ENSCGRG00000012119	Snai2	100	97.770	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020483	Snai2	99	47.751	ENSCGRG00000014932	Snai3	99	48.084	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020483	Snai2	78	34.685	ENSDNOG00000035204	-	100	33.929	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020483	Snai2	100	93.309	ENSDORG00000029620	Snai2	100	93.309	Dipodomys_ordii
MGP_CAROLIEiJ_G0020483	Snai2	99	50.172	ENSECAG00000012131	SNAI3	99	49.333	Equus_caballus
MGP_CAROLIEiJ_G0020483	Snai2	100	78.067	ENSELUG00000021795	SNAI2	79	79.554	Esox_lucius
MGP_CAROLIEiJ_G0020483	Snai2	99	57.439	ENSELUG00000018742	-	99	56.747	Esox_lucius
MGP_CAROLIEiJ_G0020483	Snai2	99	46.931	ENSFCAG00000043885	SNAI3	99	46.931	Felis_catus
MGP_CAROLIEiJ_G0020483	Snai2	89	64.017	ENSFALG00000012974	-	98	64.435	Ficedula_albicollis
MGP_CAROLIEiJ_G0020483	Snai2	100	96.654	ENSFDAG00000016958	SNAI2	100	96.654	Fukomys_damarensis
MGP_CAROLIEiJ_G0020483	Snai2	100	91.822	ENSGAGG00000000426	SNAI2	100	91.822	Gopherus_agassizii
MGP_CAROLIEiJ_G0020483	Snai2	99	53.559	ENSGAGG00000023571	SNAI3	99	53.741	Gopherus_agassizii
MGP_CAROLIEiJ_G0020483	Snai2	99	49.831	ENSGGOG00000012559	SNAI3	99	46.624	Gorilla_gorilla
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSGGOG00000000959	SNAI2	100	95.911	Gorilla_gorilla
MGP_CAROLIEiJ_G0020483	Snai2	100	74.074	ENSHCOG00000019435	SNAI2	100	73.704	Hippocampus_comes
MGP_CAROLIEiJ_G0020483	Snai2	100	69.888	ENSIPUG00000000131	snai2	100	69.145	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020483	Snai2	100	96.283	ENSSTOG00000028743	SNAI2	100	96.283	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020483	Snai2	99	49.147	ENSJJAG00000019934	Snai3	99	47.297	Jaculus_jaculus
MGP_CAROLIEiJ_G0020483	Snai2	52	86.429	ENSLOCG00000004887	SNAI3	97	80.503	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020483	Snai2	100	86.245	ENSLOCG00000005992	SNAI2	100	86.245	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020483	Snai2	100	94.424	ENSLAFG00000009299	SNAI2	100	94.424	Loxodonta_africana
MGP_CAROLIEiJ_G0020483	Snai2	99	56.985	ENSLAFG00000005117	SNAI3	99	56.985	Loxodonta_africana
MGP_CAROLIEiJ_G0020483	Snai2	99	50.169	ENSMFAG00000032064	SNAI3	99	47.588	Macaca_fascicularis
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSMFAG00000046061	SNAI2	100	95.911	Macaca_fascicularis
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSMMUG00000016195	SNAI2	100	95.911	Macaca_mulatta
MGP_CAROLIEiJ_G0020483	Snai2	99	50.169	ENSMMUG00000008716	SNAI3	99	47.588	Macaca_mulatta
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSMNEG00000034216	SNAI2	100	95.911	Macaca_nemestrina
MGP_CAROLIEiJ_G0020483	Snai2	99	50.169	ENSMNEG00000045515	SNAI3	99	47.588	Macaca_nemestrina
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSMLEG00000034407	SNAI2	100	95.911	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020483	Snai2	100	97.398	ENSMAUG00000008119	Snai2	100	97.398	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020483	Snai2	99	47.099	ENSMAUG00000001685	Snai3	99	47.099	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020483	Snai2	99	48.097	ENSMOCG00000003536	Snai3	99	46.503	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020483	Snai2	100	97.026	ENSMOCG00000006622	Snai2	100	97.026	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020483	Snai2	100	93.309	ENSMODG00000010173	SNAI2	100	93.309	Monodelphis_domestica
MGP_CAROLIEiJ_G0020483	Snai2	99	46.599	ENSMUSG00000006587	Snai3	99	46.552	Mus_musculus
MGP_CAROLIEiJ_G0020483	Snai2	100	99.257	ENSMUSG00000022676	Snai2	100	99.257	Mus_musculus
MGP_CAROLIEiJ_G0020483	Snai2	99	47.099	MGP_PahariEiJ_G0023260	Snai3	99	47.059	Mus_pahari
MGP_CAROLIEiJ_G0020483	Snai2	100	100.000	MGP_PahariEiJ_G0016188	Snai2	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0020483	Snai2	99	46.599	MGP_SPRETEiJ_G0032780	Snai3	99	46.552	Mus_spretus
MGP_CAROLIEiJ_G0020483	Snai2	100	99.628	MGP_SPRETEiJ_G0021379	Snai2	100	99.628	Mus_spretus
MGP_CAROLIEiJ_G0020483	Snai2	99	48.805	ENSMPUG00000008104	SNAI3	99	48.986	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020483	Snai2	100	96.654	ENSMPUG00000010793	SNAI2	100	96.654	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020483	Snai2	100	95.167	ENSMLUG00000001086	SNAI2	100	95.167	Myotis_lucifugus
MGP_CAROLIEiJ_G0020483	Snai2	99	46.309	ENSNGAG00000023039	Snai3	99	46.309	Nannospalax_galili
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSNLEG00000013421	SNAI2	100	95.911	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020483	Snai2	99	50.169	ENSNLEG00000000595	SNAI3	99	46.945	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020483	Snai2	97	93.130	ENSMEUG00000009510	SNAI2	100	93.130	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020483	Snai2	100	93.309	ENSOANG00000007267	SNAI2	100	93.309	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0020483	Snai2	99	47.735	ENSOGAG00000000419	SNAI3	99	47.195	Otolemur_garnettii
MGP_CAROLIEiJ_G0020483	Snai2	100	91.450	ENSOARG00000013030	SNAI2	100	91.450	Ovis_aries
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSPPAG00000015662	SNAI2	100	95.911	Pan_paniscus
MGP_CAROLIEiJ_G0020483	Snai2	99	49.492	ENSPPAG00000043301	SNAI3	99	46.302	Pan_paniscus
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSPPRG00000012562	-	100	95.911	Panthera_pardus
MGP_CAROLIEiJ_G0020483	Snai2	99	46.931	ENSPPRG00000008511	SNAI3	99	46.931	Panthera_pardus
MGP_CAROLIEiJ_G0020483	Snai2	90	95.473	ENSPTIG00000007593	SNAI2	77	95.473	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSPTRG00000020235	SNAI2	100	95.911	Pan_troglodytes
MGP_CAROLIEiJ_G0020483	Snai2	99	49.492	ENSPTRG00000008460	SNAI3	99	46.624	Pan_troglodytes
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSPANG00000017540	SNAI2	100	95.911	Papio_anubis
MGP_CAROLIEiJ_G0020483	Snai2	99	50.169	ENSPANG00000000509	SNAI3	99	47.588	Papio_anubis
MGP_CAROLIEiJ_G0020483	Snai2	99	55.172	ENSPKIG00000007872	SNAI3	99	53.020	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020483	Snai2	100	82.156	ENSPKIG00000002254	SNAI2	100	85.130	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020483	Snai2	100	91.450	ENSPSIG00000016395	SNAI2	100	91.450	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020483	Snai2	73	63.131	ENSPSIG00000004262	SNAI3	56	80.986	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020483	Snai2	100	75.465	ENSPMGG00000013179	SNAI2	100	76.952	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0020483	Snai2	100	97.398	ENSPEMG00000011739	Snai2	100	97.398	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020483	Snai2	100	93.680	ENSPCIG00000025156	SNAI2	100	93.680	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020483	Snai2	90	79.835	ENSPREG00000008528	SNAI2	86	78.189	Poecilia_reticulata
MGP_CAROLIEiJ_G0020483	Snai2	99	49.013	ENSPPYG00000007643	SNAI3	99	46.945	Pongo_abelii
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSPPYG00000018578	SNAI2	100	95.911	Pongo_abelii
MGP_CAROLIEiJ_G0020483	Snai2	100	96.283	ENSPCOG00000015656	SNAI2	100	96.283	Propithecus_coquereli
MGP_CAROLIEiJ_G0020483	Snai2	100	95.539	ENSPVAG00000009457	SNAI2	100	95.539	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020483	Snai2	99	45.734	ENSRNOG00000013586	Snai3	99	46.897	Rattus_norvegicus
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSRBIG00000041133	SNAI2	100	95.911	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020483	Snai2	99	47.557	ENSRBIG00000025770	SNAI3	99	47.910	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020483	Snai2	99	47.557	ENSRROG00000032757	SNAI3	99	47.588	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSRROG00000032273	SNAI2	100	95.911	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020483	Snai2	100	95.911	ENSSBOG00000035774	SNAI2	100	95.911	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020483	Snai2	100	93.680	ENSSHAG00000004205	SNAI2	100	93.680	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020483	Snai2	99	49.186	ENSSFOG00015016115	snai3	93	49.673	Scleropages_formosus
MGP_CAROLIEiJ_G0020483	Snai2	100	80.812	ENSSFOG00015018025	SNAI2	100	83.764	Scleropages_formosus
MGP_CAROLIEiJ_G0020483	Snai2	100	91.078	ENSSPUG00000005427	-	100	91.078	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020483	Snai2	100	93.309	ENSSSCG00000039568	SNAI2	100	93.309	Sus_scrofa
MGP_CAROLIEiJ_G0020483	Snai2	99	46.367	ENSTTRG00000006262	SNAI3	99	46.102	Tursiops_truncatus
MGP_CAROLIEiJ_G0020483	Snai2	86	96.104	ENSUAMG00000014942	SNAI2	100	96.104	Ursus_americanus
MGP_CAROLIEiJ_G0020483	Snai2	99	51.546	ENSUAMG00000020030	SNAI3	99	47.386	Ursus_americanus
MGP_CAROLIEiJ_G0020483	Snai2	98	96.212	ENSUMAG00000006525	SNAI2	100	96.212	Ursus_maritimus
MGP_CAROLIEiJ_G0020483	Snai2	99	50.000	ENSVVUG00000003233	SNAI3	99	49.660	Vulpes_vulpes
MGP_CAROLIEiJ_G0020483	Snai2	100	96.283	ENSVVUG00000017625	SNAI2	100	96.283	Vulpes_vulpes
MGP_CAROLIEiJ_G0020483	Snai2	100	88.476	ENSXETG00000024006	snai2	100	88.476	Xenopus_tropicalis