EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020648 (Gene tree)
Gene ID: 110311409
Gene Symbol: Lsg1
Alias: D16Bwg1547e
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 27444 bases
Position: chr16:27595133-27622576
Accession: 110311409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0041195	MMR_HSR1	PF01926.23	7.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0041202	-	643	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0041199	-	2734	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0041198	-	910	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0041201	-	692	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0041197	-	2383	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0041196	-	2280	-	MGP_CAROLIEiJ_P0041196	35 (aa)	-	-
MGP_CAROLIEiJ_T0041195	-	3192	-	MGP_CAROLIEiJ_P0041195	644 (aa)	XP_021040358	UPI000A31ADBB
MGP_CAROLIEiJ_T0041200	-	709	-	MGP_CAROLIEiJ_P0041200	236 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0020648's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020648's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0020648	Lsg1	66	31.364	MGP_CAROLIEiJ_G0021547	Gnl1	65	31.746

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.611	ENSG00000041802	LSG1	98	91.954	Homo_sapiens
MGP_CAROLIEiJ_G0020648	Lsg1	100	66.000	ENSAPOG00000009694	lsg1	100	65.948	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0020648	Lsg1	100	78.030	ENSAMEG00000009343	LSG1	100	78.030	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020648	Lsg1	98	65.773	ENSACIG00000012406	lsg1	100	64.571	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0020648	Lsg1	100	65.443	ENSAOCG00000016066	lsg1	100	65.391	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0020648	Lsg1	100	66.256	ENSAPEG00000003252	lsg1	100	66.102	Amphiprion_percula
MGP_CAROLIEiJ_G0020648	Lsg1	98	66.351	ENSATEG00000011794	lsg1	100	67.183	Anabas_testudineus
MGP_CAROLIEiJ_G0020648	Lsg1	95	63.854	ENSACAG00000004222	LSG1	99	63.636	Anolis_carolinensis
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.371	ENSANAG00000021153	LSG1	100	82.371	Aotus_nancymaae
MGP_CAROLIEiJ_G0020648	Lsg1	100	64.545	ENSACLG00000000520	lsg1	100	63.939	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0020648	Lsg1	99	64.222	ENSAMXG00000008271	lsg1	99	64.787	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.828	ENSBTAG00000008461	LSG1	100	80.675	Bos_taurus
MGP_CAROLIEiJ_G0020648	Lsg1	72	49.761	WBGene00016907	C53H9.2	95	54.930	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.523	ENSCJAG00000013962	LSG1	100	82.523	Callithrix_jacchus
MGP_CAROLIEiJ_G0020648	Lsg1	95	78.914	ENSCAFG00000013445	LSG1	100	78.914	Canis_familiaris
MGP_CAROLIEiJ_G0020648	Lsg1	100	77.795	ENSCAFG00020002216	LSG1	100	77.795	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.579	ENSCHIG00000015769	LSG1	100	81.579	Capra_hircus
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.549	ENSTSYG00000001447	LSG1	100	82.398	Carlito_syrichta
MGP_CAROLIEiJ_G0020648	Lsg1	95	76.499	ENSCAPG00000009856	LSG1	100	76.059	Cavia_aperea
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.459	ENSCCAG00000035744	LSG1	100	81.459	Cebus_capucinus
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.791	ENSCATG00000042060	LSG1	100	80.243	Cercocebus_atys
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.246	ENSCSAG00000008796	LSG1	92	82.067	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020648	Lsg1	100	68.955	ENSCPBG00000015941	LSG1	83	68.852	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020648	Lsg1	68	63.158	ENSCING00000007079	-	93	63.158	Ciona_intestinalis
MGP_CAROLIEiJ_G0020648	Lsg1	78	54.000	ENSCSAVG00000002514	-	89	62.245	Ciona_savignyi
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.791	ENSCANG00000030709	LSG1	100	81.611	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	87.730	ENSCGRG00001019846	Lsg1	100	87.883	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020648	Lsg1	100	87.730	ENSCGRG00000014617	Lsg1	100	87.883	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.308	ENSCSEG00000008522	lsg1	100	63.134	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0020648	Lsg1	98	66.984	ENSCVAG00000002484	lsg1	100	67.183	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	67.846	ENSDARG00000015352	lsg1	100	68.056	Danio_rerio
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.604	ENSDNOG00000006224	LSG1	100	79.148	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020648	Lsg1	99	48.694	FBgn0266284	Ns3	99	48.165	Drosophila_melanogaster
MGP_CAROLIEiJ_G0020648	Lsg1	88	88.000	ENSETEG00000003888	LSG1	89	88.000	Echinops_telfairi
MGP_CAROLIEiJ_G0020648	Lsg1	88	57.612	ENSEBUG00000003119	lsg1	85	56.944	Eptatretus_burgeri
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.639	ENSEASG00005000678	LSG1	100	81.639	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.942	ENSECAG00000017659	LSG1	100	81.942	Equus_caballus
MGP_CAROLIEiJ_G0020648	Lsg1	87	76.923	ENSEEUG00000015217	LSG1	87	76.923	Erinaceus_europaeus
MGP_CAROLIEiJ_G0020648	Lsg1	100	63.790	ENSELUG00000023973	lsg1	100	63.790	Esox_lucius
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.577	ENSFCAG00000024957	LSG1	100	80.425	Felis_catus
MGP_CAROLIEiJ_G0020648	Lsg1	99	63.775	ENSFALG00000007210	LSG1	99	63.470	Ficedula_albicollis
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.070	ENSFDAG00000017373	LSG1	100	79.070	Fukomys_damarensis
MGP_CAROLIEiJ_G0020648	Lsg1	97	65.156	ENSFHEG00000003680	lsg1	99	64.526	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0020648	Lsg1	83	72.269	ENSGMOG00000015834	lsg1	91	69.767	Gadus_morhua
MGP_CAROLIEiJ_G0020648	Lsg1	99	65.356	ENSGALG00000007058	LSG1	87	65.658	Gallus_gallus
MGP_CAROLIEiJ_G0020648	Lsg1	97	66.772	ENSGAFG00000015831	lsg1	99	66.512	Gambusia_affinis
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.780	ENSGACG00000009323	lsg1	100	64.407	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.487	ENSGGOG00000000520	LSG1	100	81.307	Gorilla_gorilla
MGP_CAROLIEiJ_G0020648	Lsg1	100	65.084	ENSHBUG00000005659	lsg1	100	63.609	Haplochromis_burtoni
MGP_CAROLIEiJ_G0020648	Lsg1	100	77.966	ENSHGLG00000017390	LSG1	100	76.263	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020648	Lsg1	100	77.812	ENSHGLG00100018587	LSG1	100	76.110	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.557	ENSHCOG00000016848	lsg1	100	64.363	Hippocampus_comes
MGP_CAROLIEiJ_G0020648	Lsg1	100	66.254	ENSIPUG00000008631	lsg1	100	66.099	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020648	Lsg1	81	81.818	ENSSTOG00000010234	LSG1	99	81.818	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020648	Lsg1	99	82.171	ENSJJAG00000015513	Lsg1	99	81.550	Jaculus_jaculus
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.873	ENSKMAG00000009681	lsg1	100	64.496	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.659	ENSLBEG00000024261	lsg1	100	64.286	Labrus_bergylta
MGP_CAROLIEiJ_G0020648	Lsg1	100	66.021	ENSLACG00000013399	LSG1	100	66.021	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020648	Lsg1	98	65.502	ENSLOCG00000004918	lsg1	100	65.601	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.989	ENSLAFG00000012919	-	100	80.989	Loxodonta_africana
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.942	ENSMFAG00000039903	LSG1	100	80.395	Macaca_fascicularis
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.094	ENSMMUG00000010708	LSG1	100	81.915	Macaca_mulatta
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.094	ENSMNEG00000031538	LSG1	100	80.547	Macaca_nemestrina
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.763	ENSMLEG00000041184	LSG1	100	81.763	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020648	Lsg1	100	64.209	ENSMAMG00000000470	lsg1	100	63.748	Mastacembelus_armatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	65.237	ENSMZEG00005017865	lsg1	100	63.759	Maylandia_zebra
MGP_CAROLIEiJ_G0020648	Lsg1	88	67.291	ENSMGAG00000007050	LSG1	99	67.291	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020648	Lsg1	96	83.736	ENSMAUG00000016976	Lsg1	97	83.736	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.250	ENSMICG00000049087	LSG1	100	81.098	Microcebus_murinus
MGP_CAROLIEiJ_G0020648	Lsg1	100	85.015	ENSMOCG00000022136	Lsg1	100	84.862	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020648	Lsg1	85	73.667	ENSMMOG00000008884	lsg1	100	63.820	Mola_mola
MGP_CAROLIEiJ_G0020648	Lsg1	99	61.300	ENSMODG00000019828	LSG1	99	60.215	Monodelphis_domestica
MGP_CAROLIEiJ_G0020648	Lsg1	100	97.205	ENSMUSG00000022538	Lsg1	100	97.205	Mus_musculus
MGP_CAROLIEiJ_G0020648	Lsg1	98	94.984	MGP_PahariEiJ_G0016352	Lsg1	100	94.299	Mus_pahari
MGP_CAROLIEiJ_G0020648	Lsg1	100	96.894	MGP_SPRETEiJ_G0021544	Lsg1	100	96.894	Mus_spretus
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.059	ENSMPUG00000003734	LSG1	100	79.059	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.542	ENSMLUG00000012548	LSG1	100	82.389	Myotis_lucifugus
MGP_CAROLIEiJ_G0020648	Lsg1	100	83.103	ENSNGAG00000021872	Lsg1	100	83.103	Nannospalax_galili
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.094	ENSNLEG00000008293	LSG1	100	82.067	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020648	Lsg1	70	72.165	ENSMEUG00000009041	-	75	74.587	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020648	Lsg1	100	64.590	ENSONIG00000002635	lsg1	100	64.438	Oreochromis_niloticus
MGP_CAROLIEiJ_G0020648	Lsg1	95	71.930	ENSOANG00000012742	LSG1	99	70.494	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.273	ENSOCUG00000004817	LSG1	100	81.639	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.659	ENSORLG00000007695	lsg1	100	64.596	Oryzias_latipes
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.557	ENSORLG00020016286	lsg1	100	63.820	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.659	ENSORLG00015012025	lsg1	100	64.286	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.082	ENSOMEG00000022379	lsg1	100	62.946	Oryzias_melastigma
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.543	ENSOGAG00000003475	LSG1	100	80.363	Otolemur_garnettii
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.939	ENSOARG00000020403	LSG1	100	79.479	Ovis_aries
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.307	ENSPPAG00000029271	LSG1	100	81.307	Pan_paniscus
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.730	ENSPPRG00000010281	LSG1	100	79.580	Panthera_pardus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.728	ENSPTIG00000010789	LSG1	100	80.577	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.155	ENSPTRG00000015760	LSG1	100	81.155	Pan_troglodytes
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.246	ENSPANG00000018249	LSG1	100	80.699	Papio_anubis
MGP_CAROLIEiJ_G0020648	Lsg1	98	64.455	ENSPKIG00000002895	lsg1	100	64.110	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020648	Lsg1	96	66.094	ENSPSIG00000009821	LSG1	100	65.827	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020648	Lsg1	95	65.528	ENSPMGG00000000931	lsg1	100	65.528	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	86.391	ENSPEMG00000012082	-	100	85.933	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020648	Lsg1	99	60.210	ENSPMAG00000007451	lsg1	99	59.398	Petromyzon_marinus
MGP_CAROLIEiJ_G0020648	Lsg1	100	67.358	ENSPCIG00000013890	LSG1	82	67.358	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020648	Lsg1	97	67.143	ENSPFOG00000021882	lsg1	99	66.718	Poecilia_formosa
MGP_CAROLIEiJ_G0020648	Lsg1	97	66.349	ENSPLAG00000019536	lsg1	99	65.944	Poecilia_latipinna
MGP_CAROLIEiJ_G0020648	Lsg1	97	66.456	ENSPMEG00000017281	lsg1	99	66.049	Poecilia_mexicana
MGP_CAROLIEiJ_G0020648	Lsg1	97	57.054	ENSPREG00000006048	lsg1	99	56.692	Poecilia_reticulata
MGP_CAROLIEiJ_G0020648	Lsg1	92	80.890	ENSPPYG00000014425	LSG1	100	79.703	Pongo_abelii
MGP_CAROLIEiJ_G0020648	Lsg1	90	86.667	ENSPCAG00000005511	LSG1	90	86.667	Procavia_capensis
MGP_CAROLIEiJ_G0020648	Lsg1	100	81.032	ENSPCOG00000012360	LSG1	100	80.880	Propithecus_coquereli
MGP_CAROLIEiJ_G0020648	Lsg1	100	64.394	ENSPNYG00000021994	lsg1	100	63.788	Pundamilia_nyererei
MGP_CAROLIEiJ_G0020648	Lsg1	100	65.106	ENSPNAG00000015533	lsg1	100	64.804	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020648	Lsg1	100	90.840	ENSRNOG00000001727	Lsg1	100	90.534	Rattus_norvegicus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.880	ENSRBIG00000029053	LSG1	100	80.670	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.880	ENSRROG00000037702	LSG1	100	80.670	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020648	Lsg1	83	39.820	YGL099W	LSG1	65	58.084	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0020648	Lsg1	100	82.523	ENSSBOG00000034938	LSG1	100	82.523	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020648	Lsg1	78	67.429	ENSSHAG00000003487	LSG1	100	67.429	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020648	Lsg1	98	65.938	ENSSFOG00015008955	lsg1	99	65.438	Scleropages_formosus
MGP_CAROLIEiJ_G0020648	Lsg1	98	66.667	ENSSDUG00000004622	lsg1	100	65.344	Seriola_dumerili
MGP_CAROLIEiJ_G0020648	Lsg1	98	66.877	ENSSLDG00000010869	lsg1	100	65.789	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0020648	Lsg1	82	78.717	ENSSARG00000012981	LSG1	81	77.551	Sorex_araneus
MGP_CAROLIEiJ_G0020648	Lsg1	100	69.834	ENSSPUG00000016347	LSG1	100	69.184	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	64.660	ENSSPAG00000005508	lsg1	100	64.660	Stegastes_partitus
MGP_CAROLIEiJ_G0020648	Lsg1	100	80.805	ENSSSCG00000011827	LSG1	100	80.186	Sus_scrofa
MGP_CAROLIEiJ_G0020648	Lsg1	89	64.597	ENSTGUG00000009068	LSG1	100	64.262	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020648	Lsg1	98	62.599	ENSTRUG00000017380	lsg1	100	62.133	Takifugu_rubripes
MGP_CAROLIEiJ_G0020648	Lsg1	98	65.610	ENSTNIG00000015570	lsg1	100	65.070	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0020648	Lsg1	100	73.853	ENSTTRG00000000559	LSG1	100	72.936	Tursiops_truncatus
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.211	ENSUAMG00000012454	LSG1	100	79.211	Ursus_americanus
MGP_CAROLIEiJ_G0020648	Lsg1	100	79.211	ENSUMAG00000000855	LSG1	100	79.211	Ursus_maritimus
MGP_CAROLIEiJ_G0020648	Lsg1	95	75.080	ENSVPAG00000012400	LSG1	100	74.641	Vicugna_pacos
MGP_CAROLIEiJ_G0020648	Lsg1	95	77.796	ENSVVUG00000008956	LSG1	97	77.796	Vulpes_vulpes
MGP_CAROLIEiJ_G0020648	Lsg1	100	66.159	ENSXETG00000003451	lsg1	100	66.058	Xenopus_tropicalis
MGP_CAROLIEiJ_G0020648	Lsg1	97	65.823	ENSXCOG00000003239	lsg1	99	65.432	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0020648	Lsg1	97	65.491	ENSXMAG00000005536	lsg1	99	64.820	Xiphophorus_maculatus