EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020824 (Gene tree)
Gene ID: 110311694
Gene Symbol: Cmss1
Alias: 1110001A06Rik|2610528E23Rik|4930572F24Rik
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 297794 bases
Position: chr16:53683101-53980894
Accession: 110311694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0041922	CMS1	PF14617.6	1.6e-32	1	1
MGP_CAROLIEiJ_P0041922	DEAD	PF00270.29	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0041922	-	930	-	MGP_CAROLIEiJ_P0041922	276 (aa)	XP_021040821	UPI000A3178A6

Gene Model

Click here to download MGP_CAROLIEiJ_G0020824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSG00000184220	CMSS1	99	88.889	Homo_sapiens
MGP_CAROLIEiJ_G0020824	Cmss1	73	65.347	ENSAPOG00000010604	cmss1	92	60.000	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0020824	Cmss1	93	80.769	ENSAMEG00000004092	CMSS1	100	80.769	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020824	Cmss1	73	54.950	ENSACIG00000021854	cmss1	75	54.950	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.595	ENSAOCG00000013361	cmss1	100	53.633	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.069	ENSAPEG00000005829	cmss1	100	52.174	Amphiprion_percula
MGP_CAROLIEiJ_G0020824	Cmss1	100	53.242	ENSATEG00000008209	cmss1	100	54.983	Anabas_testudineus
MGP_CAROLIEiJ_G0020824	Cmss1	83	68.696	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020824	Cmss1	91	65.891	ENSACAG00000011065	CMSS1	95	65.891	Anolis_carolinensis
MGP_CAROLIEiJ_G0020824	Cmss1	100	79.715	ENSANAG00000023565	CMSS1	100	79.715	Aotus_nancymaae
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.203	ENSACLG00000027294	cmss1	100	52.560	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0020824	Cmss1	100	46.284	ENSAMXG00000002046	cmss1	100	46.284	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020824	Cmss1	100	83.214	ENSBTAG00000013663	CMSS1	100	83.214	Bos_taurus
MGP_CAROLIEiJ_G0020824	Cmss1	100	80.427	ENSCJAG00000000610	CMSS1	100	80.427	Callithrix_jacchus
MGP_CAROLIEiJ_G0020824	Cmss1	93	82.625	ENSCAFG00000009230	CMSS1	93	82.625	Canis_familiaris
MGP_CAROLIEiJ_G0020824	Cmss1	83	77.586	ENSCAFG00020024156	-	73	77.586	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020824	Cmss1	93	82.308	ENSCAFG00020009464	-	95	82.308	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020824	Cmss1	96	78.889	ENSCHIG00000013003	CMSS1	98	78.598	Capra_hircus
MGP_CAROLIEiJ_G0020824	Cmss1	96	76.471	ENSTSYG00000009266	CMSS1	99	78.764	Carlito_syrichta
MGP_CAROLIEiJ_G0020824	Cmss1	81	67.826	ENSCAPG00000013584	CMSS1	88	73.333	Cavia_aperea
MGP_CAROLIEiJ_G0020824	Cmss1	100	80.357	ENSCPOG00000014680	CMSS1	100	80.357	Cavia_porcellus
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.495	ENSCCAG00000034685	CMSS1	100	81.495	Cebus_capucinus
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSCATG00000031980	CMSS1	100	81.786	Cercocebus_atys
MGP_CAROLIEiJ_G0020824	Cmss1	83	84.348	ENSCLAG00000011241	CMSS1	98	84.348	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020824	Cmss1	88	82.857	ENSCSAG00000006024	CMSS1	99	82.857	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020824	Cmss1	100	62.366	ENSCHOG00000012098	CMSS1	100	62.366	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0020824	Cmss1	82	39.474	ENSCING00000014848	-	100	42.781	Ciona_intestinalis
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.143	ENSCANG00000031337	CMSS1	100	82.143	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	86.022	ENSCGRG00001014305	Cmss1	100	87.814	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020824	Cmss1	92	87.938	ENSCGRG00000006722	Cmss1	99	87.938	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020824	Cmss1	100	50.340	ENSCSEG00000004958	cmss1	100	52.027	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0020824	Cmss1	100	49.660	ENSCVAG00000005039	cmss1	100	52.759	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	46.622	ENSDARG00000112579	cmss1	100	47.782	Danio_rerio
MGP_CAROLIEiJ_G0020824	Cmss1	94	80.000	ENSDNOG00000040418	CMSS1	92	80.545	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.500	ENSDORG00000010461	Cmss1	100	82.500	Dipodomys_ordii
MGP_CAROLIEiJ_G0020824	Cmss1	96	74.627	ENSEASG00005010966	CMSS1	98	84.651	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020824	Cmss1	95	77.820	ENSECAG00000015662	CMSS1	99	81.938	Equus_caballus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.857	ENSEEUG00000007624	-	100	52.500	Erinaceus_europaeus
MGP_CAROLIEiJ_G0020824	Cmss1	100	50.333	ENSELUG00000019459	cmss1	100	51.475	Esox_lucius
MGP_CAROLIEiJ_G0020824	Cmss1	100	84.643	ENSFCAG00000044577	CMSS1	100	84.643	Felis_catus
MGP_CAROLIEiJ_G0020824	Cmss1	86	65.546	ENSFALG00000005816	CMSS1	97	66.957	Ficedula_albicollis
MGP_CAROLIEiJ_G0020824	Cmss1	83	82.533	ENSFDAG00000012577	CMSS1	100	82.533	Fukomys_damarensis
MGP_CAROLIEiJ_G0020824	Cmss1	82	59.565	ENSFHEG00000012008	cmss1	95	60.870	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0020824	Cmss1	99	53.191	ENSGMOG00000016729	cmss1	100	53.004	Gadus_morhua
MGP_CAROLIEiJ_G0020824	Cmss1	93	62.891	ENSGALG00000015267	CMSS1	95	62.891	Gallus_gallus
MGP_CAROLIEiJ_G0020824	Cmss1	75	64.078	ENSGAFG00000021217	cmss1	77	63.861	Gambusia_affinis
MGP_CAROLIEiJ_G0020824	Cmss1	99	49.648	ENSGACG00000002798	cmss1	100	50.704	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	65.217	ENSGAGG00000019861	CMSS1	100	65.217	Gopherus_agassizii
MGP_CAROLIEiJ_G0020824	Cmss1	93	81.853	ENSGGOG00000014125	CMSS1	99	81.853	Gorilla_gorilla
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.379	ENSHBUG00000008431	cmss1	100	51.379	Haplochromis_burtoni
MGP_CAROLIEiJ_G0020824	Cmss1	90	80.645	ENSHGLG00000019481	CMSS1	99	80.645	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020824	Cmss1	92	79.921	ENSHGLG00100010314	CMSS1	99	79.921	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.881	ENSHCOG00000003222	cmss1	100	54.237	Hippocampus_comes
MGP_CAROLIEiJ_G0020824	Cmss1	100	49.320	ENSIPUG00000011591	cmss1	100	48.966	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSSTOG00000019366	CMSS1	100	81.786	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	79.286	ENSJJAG00000014894	Cmss1	99	81.614	Jaculus_jaculus
MGP_CAROLIEiJ_G0020824	Cmss1	73	54.455	ENSKMAG00000002390	cmss1	81	54.455	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0020824	Cmss1	73	59.113	ENSLBEG00000006298	cmss1	83	59.113	Labrus_bergylta
MGP_CAROLIEiJ_G0020824	Cmss1	83	64.783	ENSLACG00000009293	CMSS1	100	64.783	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.237	ENSLOCG00000009391	cmss1	100	51.590	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020824	Cmss1	83	82.533	ENSLAFG00000017509	CMSS1	100	82.533	Loxodonta_africana
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.143	ENSMFAG00000045006	CMSS1	100	82.143	Macaca_fascicularis
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSMMUG00000002939	CMSS1	100	81.786	Macaca_mulatta
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSMNEG00000031315	CMSS1	100	81.786	Macaca_nemestrina
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSMLEG00000033660	CMSS1	100	81.786	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.759	ENSMAMG00000017176	cmss1	100	52.414	Mastacembelus_armatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.203	ENSMZEG00005021886	cmss1	100	52.560	Maylandia_zebra
MGP_CAROLIEiJ_G0020824	Cmss1	83	67.686	ENSMGAG00000014360	CMSS1	100	67.686	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020824	Cmss1	100	67.384	ENSMAUG00000020609	Cmss1	100	67.384	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.786	ENSMICG00000048977	CMSS1	100	81.786	Microcebus_murinus
MGP_CAROLIEiJ_G0020824	Cmss1	100	86.957	ENSMOCG00000021937	Cmss1	100	86.957	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020824	Cmss1	73	61.386	ENSMMOG00000019794	cmss1	95	55.745	Mola_mola
MGP_CAROLIEiJ_G0020824	Cmss1	94	70.769	ENSMODG00000002275	CMSS1	98	70.769	Monodelphis_domestica
MGP_CAROLIEiJ_G0020824	Cmss1	100	53.082	ENSMALG00000004250	cmss1	100	53.425	Monopterus_albus
MGP_CAROLIEiJ_G0020824	Cmss1	100	98.551	ENSMUSG00000022748	Cmss1	100	98.551	Mus_musculus
MGP_CAROLIEiJ_G0020824	Cmss1	100	95.652	MGP_PahariEiJ_G0016524	Cmss1	100	95.652	Mus_pahari
MGP_CAROLIEiJ_G0020824	Cmss1	100	98.188	MGP_SPRETEiJ_G0021724	Cmss1	100	98.188	Mus_spretus
MGP_CAROLIEiJ_G0020824	Cmss1	92	84.496	ENSMPUG00000011324	CMSS1	99	83.846	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020824	Cmss1	93	83.142	ENSMLUG00000001131	CMSS1	99	83.142	Myotis_lucifugus
MGP_CAROLIEiJ_G0020824	Cmss1	100	83.571	ENSNGAG00000020316	Cmss1	100	83.571	Nannospalax_galili
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.203	ENSNBRG00000003095	cmss1	100	52.218	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.857	ENSNLEG00000034172	CMSS1	100	82.857	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020824	Cmss1	83	65.502	ENSMEUG00000014505	CMSS1	100	65.502	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.362	ENSOPRG00000002986	CMSS1	100	81.362	Ochotona_princeps
MGP_CAROLIEiJ_G0020824	Cmss1	100	68.459	ENSODEG00000001853	-	100	68.459	Octodon_degus
MGP_CAROLIEiJ_G0020824	Cmss1	100	66.065	ENSODEG00000009446	-	100	64.621	Octodon_degus
MGP_CAROLIEiJ_G0020824	Cmss1	100	77.061	ENSODEG00000003558	-	100	77.061	Octodon_degus
MGP_CAROLIEiJ_G0020824	Cmss1	100	80.714	ENSODEG00000005226	-	100	80.714	Octodon_degus
MGP_CAROLIEiJ_G0020824	Cmss1	73	61.881	ENSONIG00000006678	cmss1	77	61.881	Oreochromis_niloticus
MGP_CAROLIEiJ_G0020824	Cmss1	92	71.260	ENSOANG00000007529	CMSS1	100	74.043	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0020824	Cmss1	96	79.630	ENSOCUG00000025366	CMSS1	98	79.336	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.632	ENSORLG00000020340	cmss1	100	54.895	Oryzias_latipes
MGP_CAROLIEiJ_G0020824	Cmss1	76	55.924	ENSORLG00020012235	cmss1	85	55.941	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0020824	Cmss1	73	56.436	ENSORLG00015015551	cmss1	75	56.436	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0020824	Cmss1	100	54.325	ENSOMEG00000012555	cmss1	100	55.017	Oryzias_melastigma
MGP_CAROLIEiJ_G0020824	Cmss1	83	82.969	ENSOGAG00000002045	CMSS1	100	82.969	Otolemur_garnettii
MGP_CAROLIEiJ_G0020824	Cmss1	96	78.810	ENSOARG00000017899	CMSS1	92	78.519	Ovis_aries
MGP_CAROLIEiJ_G0020824	Cmss1	97	78.889	ENSPPAG00000038515	CMSS1	99	78.889	Pan_paniscus
MGP_CAROLIEiJ_G0020824	Cmss1	100	83.929	ENSPPRG00000016767	CMSS1	100	83.929	Panthera_pardus
MGP_CAROLIEiJ_G0020824	Cmss1	100	83.214	ENSPTIG00000018274	CMSS1	100	83.214	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.429	ENSPTRG00000015157	CMSS1	99	82.449	Pan_troglodytes
MGP_CAROLIEiJ_G0020824	Cmss1	93	80.469	ENSPANG00000019980	CMSS1	99	80.469	Papio_anubis
MGP_CAROLIEiJ_G0020824	Cmss1	95	56.364	ENSPKIG00000012609	cmss1	97	58.175	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020824	Cmss1	83	74.348	ENSPSIG00000003849	CMSS1	100	74.348	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020824	Cmss1	85	57.203	ENSPMGG00000010286	cmss1	99	58.051	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0020824	Cmss1	100	89.324	ENSPEMG00000016384	Cmss1	100	89.324	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020824	Cmss1	74	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
MGP_CAROLIEiJ_G0020824	Cmss1	89	72.289	ENSPCIG00000015656	CMSS1	94	72.581	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.098	ENSPFOG00000016849	cmss1	100	53.846	Poecilia_formosa
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.748	ENSPLAG00000008323	cmss1	100	53.497	Poecilia_latipinna
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.721	ENSPMEG00000021020	cmss1	100	53.401	Poecilia_mexicana
MGP_CAROLIEiJ_G0020824	Cmss1	82	60.435	ENSPREG00000007618	cmss1	80	59.322	Poecilia_reticulata
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.143	ENSPPYG00000013606	CMSS1	100	82.143	Pongo_abelii
MGP_CAROLIEiJ_G0020824	Cmss1	100	82.143	ENSPCOG00000020035	CMSS1	100	82.143	Propithecus_coquereli
MGP_CAROLIEiJ_G0020824	Cmss1	100	73.214	ENSPVAG00000017031	CMSS1	100	73.214	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020824	Cmss1	91	51.698	ENSPNYG00000013428	cmss1	97	53.184	Pundamilia_nyererei
MGP_CAROLIEiJ_G0020824	Cmss1	100	48.299	ENSPNAG00000007912	cmss1	100	49.153	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020824	Cmss1	93	93.750	ENSRNOG00000027888	Cmss1	99	93.750	Rattus_norvegicus
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.429	ENSRBIG00000037931	CMSS1	100	81.429	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020824	Cmss1	100	81.429	ENSRROG00000042910	CMSS1	100	81.429	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020824	Cmss1	93	80.769	ENSSBOG00000030980	CMSS1	99	80.769	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020824	Cmss1	89	69.960	ENSSHAG00000009321	CMSS1	99	71.146	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020824	Cmss1	100	54.452	ENSSFOG00015001509	cmss1	100	54.795	Scleropages_formosus
MGP_CAROLIEiJ_G0020824	Cmss1	100	52.381	ENSSMAG00000001653	cmss1	100	53.608	Scophthalmus_maximus
MGP_CAROLIEiJ_G0020824	Cmss1	100	55.172	ENSSDUG00000007719	cmss1	100	55.862	Seriola_dumerili
MGP_CAROLIEiJ_G0020824	Cmss1	75	64.563	ENSSLDG00000012300	cmss1	94	53.509	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0020824	Cmss1	100	67.972	ENSSARG00000003584	CMSS1	100	67.972	Sorex_araneus
MGP_CAROLIEiJ_G0020824	Cmss1	82	68.722	ENSSPUG00000003865	CMSS1	100	68.722	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020824	Cmss1	75	65.049	ENSSPAG00000019182	cmss1	82	56.274	Stegastes_partitus
MGP_CAROLIEiJ_G0020824	Cmss1	100	83.571	ENSSSCG00000011970	CMSS1	100	83.571	Sus_scrofa
MGP_CAROLIEiJ_G0020824	Cmss1	83	66.087	ENSTGUG00000013635	CMSS1	100	66.087	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020824	Cmss1	100	51.034	ENSTRUG00000015265	cmss1	100	51.724	Takifugu_rubripes
MGP_CAROLIEiJ_G0020824	Cmss1	73	56.436	ENSTNIG00000002880	cmss1	73	56.436	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0020824	Cmss1	100	55.516	ENSTBEG00000016722	CMSS1	100	55.516	Tupaia_belangeri
MGP_CAROLIEiJ_G0020824	Cmss1	100	79.643	ENSTTRG00000001562	CMSS1	100	79.643	Tursiops_truncatus
MGP_CAROLIEiJ_G0020824	Cmss1	97	79.927	ENSUAMG00000024209	CMSS1	100	85.268	Ursus_americanus
MGP_CAROLIEiJ_G0020824	Cmss1	93	81.923	ENSUMAG00000001983	CMSS1	99	82.101	Ursus_maritimus
MGP_CAROLIEiJ_G0020824	Cmss1	100	62.857	ENSVPAG00000000263	CMSS1	100	62.857	Vicugna_pacos
MGP_CAROLIEiJ_G0020824	Cmss1	82	82.301	ENSVVUG00000007776	-	89	82.301	Vulpes_vulpes
MGP_CAROLIEiJ_G0020824	Cmss1	88	82.591	ENSVVUG00000021647	-	100	82.591	Vulpes_vulpes
MGP_CAROLIEiJ_G0020824	Cmss1	100	54.577	ENSXETG00000011858	cmss1	100	54.577	Xenopus_tropicalis
MGP_CAROLIEiJ_G0020824	Cmss1	75	63.592	ENSXCOG00000018724	cmss1	69	63.366	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0020824	Cmss1	75	63.592	ENSXMAG00000011243	cmss1	76	63.366	Xiphophorus_maculatus