EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020944 (Gene tree)
Gene ID: 110311956
Gene Symbol: Scaf4
Alias: Sfrs15|Sra4|Srsf15
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 54579 bases
Position: chr16:84622824-84677402
Accession: 110311956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0042212	RRM_1	PF00076.22	5.7e-09	1	1
MGP_CAROLIEiJ_P0042213	RRM_1	PF00076.22	5.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0042213	-	4174	XM_021185531	MGP_CAROLIEiJ_P0042213	1214 (aa)	XP_021041190	UPI000A3179C4
MGP_CAROLIEiJ_T0042212	-	4180	XM_021185536	MGP_CAROLIEiJ_P0042212	1188 (aa)	XP_021041195	UPI000A3163AF

Gene Model

Click here to download MGP_CAROLIEiJ_G0020944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020944's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	ENSG00000156304	SCAF4	100	83.510	Homo_sapiens
MGP_CAROLIEiJ_G0020944	Scaf4	70	88.062	ENSAMEG00000014987	SCAF4	97	87.933	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020944	Scaf4	53	57.977	ENSATEG00000011758	scaf4b	54	72.840	Anabas_testudineus
MGP_CAROLIEiJ_G0020944	Scaf4	99	74.093	ENSAPLG00000002509	SCAF4	59	87.004	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.116	ENSANAG00000037494	SCAF4	100	83.510	Aotus_nancymaae
MGP_CAROLIEiJ_G0020944	Scaf4	95	88.974	ENSBTAG00000018855	SCAF4	100	82.612	Bos_taurus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.859	ENSCJAG00000008993	SCAF4	100	83.837	Callithrix_jacchus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.345	ENSCAFG00000008863	SCAF4	99	89.345	Canis_familiaris
MGP_CAROLIEiJ_G0020944	Scaf4	94	86.778	ENSCAFG00020026019	SCAF4	100	89.345	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.103	ENSCHIG00000008385	SCAF4	100	82.219	Capra_hircus
MGP_CAROLIEiJ_G0020944	Scaf4	91	87.241	ENSTSYG00000011344	SCAF4	98	84.663	Carlito_syrichta
MGP_CAROLIEiJ_G0020944	Scaf4	96	88.447	ENSCPOG00000012443	SCAF4	100	86.812	Cavia_porcellus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.859	ENSCCAG00000033727	SCAF4	100	83.837	Cebus_capucinus
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.410	ENSCATG00000030379	SCAF4	100	83.537	Cercocebus_atys
MGP_CAROLIEiJ_G0020944	Scaf4	94	89.642	ENSCLAG00000006298	SCAF4	100	82.733	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.851	ENSCSAG00000009438	SCAF4	100	84.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.593	ENSCANG00000029847	SCAF4	100	83.918	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020944	Scaf4	99	89.303	ENSCGRG00001020821	Scaf4	100	88.806	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020944	Scaf4	99	89.129	ENSCGRG00000014360	Scaf4	100	88.420	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020944	Scaf4	100	84.863	ENSDNOG00000019014	SCAF4	94	80.213	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020944	Scaf4	88	84.056	ENSETEG00000000583	SCAF4	97	83.586	Echinops_telfairi
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.433	ENSEASG00005007756	SCAF4	100	89.345	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.948	ENSECAG00000014248	SCAF4	100	89.474	Equus_caballus
MGP_CAROLIEiJ_G0020944	Scaf4	54	55.593	ENSELUG00000002779	SCAF8	61	69.565	Esox_lucius
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.562	ENSFCAG00000002228	SCAF4	100	89.217	Felis_catus
MGP_CAROLIEiJ_G0020944	Scaf4	99	83.347	ENSFDAG00000017780	SCAF4	100	89.859	Fukomys_damarensis
MGP_CAROLIEiJ_G0020944	Scaf4	55	60.075	ENSFHEG00000007634	scaf4b	52	79.137	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0020944	Scaf4	99	75.321	ENSGALG00000033965	SCAF4	59	76.276	Gallus_gallus
MGP_CAROLIEiJ_G0020944	Scaf4	88	86.923	ENSGGOG00000015557	SCAF4	99	79.808	Gorilla_gorilla
MGP_CAROLIEiJ_G0020944	Scaf4	99	85.422	ENSHGLG00000010582	SCAF4	100	89.345	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020944	Scaf4	98	85.422	ENSHGLG00100009441	SCAF4	100	89.345	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020944	Scaf4	65	58.568	ENSIPUG00000011285	scaf4	52	75.000	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020944	Scaf4	99	86.516	ENSSTOG00000004450	SCAF4	100	91.014	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020944	Scaf4	92	89.633	ENSJJAG00000019447	Scaf4	99	88.660	Jaculus_jaculus
MGP_CAROLIEiJ_G0020944	Scaf4	57	59.770	ENSKMAG00000005742	scaf4b	54	75.159	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0020944	Scaf4	90	64.286	ENSLACG00000013913	SCAF4	59	64.656	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020944	Scaf4	95	53.373	ENSLOCG00000009162	scaf4a	59	61.465	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.217	ENSLAFG00000010710	SCAF4	94	90.392	Loxodonta_africana
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.410	ENSMFAG00000037668	SCAF4	100	83.496	Macaca_fascicularis
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.410	ENSMMUG00000001712	SCAF4	100	83.415	Macaca_mulatta
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.154	ENSMNEG00000032966	SCAF4	100	83.591	Macaca_nemestrina
MGP_CAROLIEiJ_G0020944	Scaf4	99	85.850	ENSMLEG00000039674	SCAF4	100	82.759	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020944	Scaf4	99	74.742	ENSMGAG00000014515	SCAF4	58	85.560	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020944	Scaf4	91	90.106	ENSMAUG00000013307	Scaf4	100	83.719	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.412	ENSMICG00000005256	SCAF4	100	83.905	Microcebus_murinus
MGP_CAROLIEiJ_G0020944	Scaf4	100	89.491	ENSMOCG00000012087	Scaf4	100	90.774	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020944	Scaf4	98	77.936	ENSMODG00000021040	SCAF4	99	75.572	Monodelphis_domestica
MGP_CAROLIEiJ_G0020944	Scaf4	100	97.815	ENSMUSG00000022983	Scaf4	100	97.815	Mus_musculus
MGP_CAROLIEiJ_G0020944	Scaf4	100	96.491	MGP_PahariEiJ_G0016649	Scaf4	100	96.491	Mus_pahari
MGP_CAROLIEiJ_G0020944	Scaf4	100	98.148	MGP_SPRETEiJ_G0021850	Scaf4	100	98.148	Mus_spretus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.332	ENSMPUG00000001078	SCAF4	100	89.117	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020944	Scaf4	99	73.453	ENSMLUG00000011472	SCAF4	78	78.311	Myotis_lucifugus
MGP_CAROLIEiJ_G0020944	Scaf4	96	89.541	ENSNGAG00000005214	Scaf4	99	89.744	Nannospalax_galili
MGP_CAROLIEiJ_G0020944	Scaf4	96	90.206	ENSNLEG00000003569	SCAF4	100	83.510	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020944	Scaf4	74	89.130	ENSOPRG00000007016	SCAF4	76	91.848	Ochotona_princeps
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.859	ENSODEG00000002718	SCAF4	100	82.334	Octodon_degus
MGP_CAROLIEiJ_G0020944	Scaf4	95	86.211	ENSOCUG00000008336	SCAF4	99	86.340	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020944	Scaf4	99	79.788	ENSOGAG00000014653	SCAF4	99	79.838	Otolemur_garnettii
MGP_CAROLIEiJ_G0020944	Scaf4	99	83.995	ENSOARG00000013894	SCAF4	99	81.699	Ovis_aries
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	ENSPPAG00000028535	SCAF4	100	83.510	Pan_paniscus
MGP_CAROLIEiJ_G0020944	Scaf4	95	89.217	ENSPPRG00000000635	SCAF4	100	89.089	Panthera_pardus
MGP_CAROLIEiJ_G0020944	Scaf4	99	82.109	ENSPTIG00000021578	SCAF4	99	84.291	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	ENSPTRG00000013848	SCAF4	100	83.510	Pan_troglodytes
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.410	ENSPANG00000017332	SCAF4	100	83.659	Papio_anubis
MGP_CAROLIEiJ_G0020944	Scaf4	56	66.397	ENSPKIG00000022408	scaf4a	77	79.747	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020944	Scaf4	94	75.597	ENSPSIG00000014242	SCAF4	56	87.365	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0020944	Scaf4	84	82.334	ENSPCIG00000028183	SCAF4	91	79.151	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020944	Scaf4	67	53.349	ENSPFOG00000017156	scaf4a	53	73.171	Poecilia_formosa
MGP_CAROLIEiJ_G0020944	Scaf4	55	61.111	ENSPLAG00000001972	scaf4a	61	73.780	Poecilia_latipinna
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.464	ENSPPYG00000011355	SCAF4	100	83.673	Pongo_abelii
MGP_CAROLIEiJ_G0020944	Scaf4	92	82.011	ENSPCAG00000009998	SCAF4	100	71.895	Procavia_capensis
MGP_CAROLIEiJ_G0020944	Scaf4	100	86.429	ENSPCOG00000018710	SCAF4	100	83.592	Propithecus_coquereli
MGP_CAROLIEiJ_G0020944	Scaf4	95	88.918	ENSPVAG00000005220	SCAF4	100	81.454	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020944	Scaf4	64	57.005	ENSPNAG00000016892	scaf4a	60	70.070	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020944	Scaf4	100	92.500	ENSRNOG00000002104	Scaf4	100	92.833	Rattus_norvegicus
MGP_CAROLIEiJ_G0020944	Scaf4	94	88.960	ENSRBIG00000040007	SCAF4	95	91.945	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020944	Scaf4	95	90.593	ENSRROG00000029488	SCAF4	100	84.000	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020944	Scaf4	95	81.795	ENSSHAG00000001581	SCAF4	98	82.920	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020944	Scaf4	61	57.621	ENSSMAG00000003738	scaf4b	54	72.785	Scophthalmus_maximus
MGP_CAROLIEiJ_G0020944	Scaf4	99	83.155	ENSSARG00000009994	SCAF4	99	86.445	Sorex_araneus
MGP_CAROLIEiJ_G0020944	Scaf4	95	86.194	ENSSSCG00000021023	SCAF4	100	85.990	Sus_scrofa
MGP_CAROLIEiJ_G0020944	Scaf4	75	71.718	ENSTGUG00000013464	SCAF4	61	71.488	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020944	Scaf4	94	86.856	ENSTTRG00000010963	SCAF4	100	87.035	Tursiops_truncatus
MGP_CAROLIEiJ_G0020944	Scaf4	95	86.340	ENSUAMG00000008860	SCAF4	100	86.008	Ursus_americanus
MGP_CAROLIEiJ_G0020944	Scaf4	94	87.629	ENSUMAG00000016962	SCAF4	100	80.826	Ursus_maritimus
MGP_CAROLIEiJ_G0020944	Scaf4	94	89.345	ENSVVUG00000002953	SCAF4	100	89.345	Vulpes_vulpes