EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0020948 (Gene tree)
Gene ID: 110311514
Gene Symbol: Urb1
Alias: 4921511H13Rik|5730405K23Rik
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 60412 bases
Position: chr16:85138933-85199344
Accession: 110311514
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0042222	Npa1	PF11707.8	4.3e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0042224	-	2182	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0042225	-	1219	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0042226	-	661	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0042222	-	7341	XM_021184858	MGP_CAROLIEiJ_P0042222	2277 (aa)	XP_021040517	UPI000A316514
MGP_CAROLIEiJ_T0042223	-	809	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0020948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0020948's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0020948	Urb1	99	76.004	ENSG00000142207	URB1	99	75.891	Homo_sapiens
MGP_CAROLIEiJ_G0020948	Urb1	99	42.190	ENSAPOG00000020308	urb1	99	42.147	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0020948	Urb1	99	73.592	ENSAMEG00000011998	URB1	99	73.592	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0020948	Urb1	94	44.331	ENSACIG00000003248	urb1	96	44.331	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0020948	Urb1	99	40.575	ENSAOCG00000010364	urb1	99	40.618	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0020948	Urb1	96	51.217	ENSAPEG00000010758	urb1	99	51.217	Amphiprion_percula
MGP_CAROLIEiJ_G0020948	Urb1	97	43.484	ENSATEG00000011790	urb1	96	43.484	Anabas_testudineus
MGP_CAROLIEiJ_G0020948	Urb1	97	54.836	ENSAPLG00000012791	URB1	100	54.881	Anas_platyrhynchos
MGP_CAROLIEiJ_G0020948	Urb1	99	51.890	ENSACAG00000002817	URB1	99	51.890	Anolis_carolinensis
MGP_CAROLIEiJ_G0020948	Urb1	99	75.770	ENSANAG00000024617	URB1	99	75.770	Aotus_nancymaae
MGP_CAROLIEiJ_G0020948	Urb1	99	44.122	ENSACLG00000024865	urb1	99	44.122	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0020948	Urb1	99	39.860	ENSAMXG00000012306	urb1	99	39.930	Astyanax_mexicanus
MGP_CAROLIEiJ_G0020948	Urb1	99	70.421	ENSBTAG00000012412	URB1	99	70.565	Bos_taurus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.362	ENSCJAG00000009118	URB1	99	75.362	Callithrix_jacchus
MGP_CAROLIEiJ_G0020948	Urb1	99	73.804	ENSCAFG00000008892	URB1	99	73.804	Canis_familiaris
MGP_CAROLIEiJ_G0020948	Urb1	99	73.548	ENSCAFG00020025987	-	99	73.548	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020948	Urb1	99	72.579	ENSCAFG00020025994	-	99	72.535	Canis_lupus_dingo
MGP_CAROLIEiJ_G0020948	Urb1	99	70.245	ENSCHIG00000015645	URB1	99	70.333	Capra_hircus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.396	ENSTSYG00000013286	URB1	99	75.396	Carlito_syrichta
MGP_CAROLIEiJ_G0020948	Urb1	98	73.516	ENSCAPG00000015589	URB1	99	73.289	Cavia_aperea
MGP_CAROLIEiJ_G0020948	Urb1	99	74.560	ENSCPOG00000006748	URB1	99	74.560	Cavia_porcellus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.583	ENSCCAG00000021299	URB1	99	75.583	Cebus_capucinus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.979	ENSCATG00000042630	URB1	99	75.979	Cercocebus_atys
MGP_CAROLIEiJ_G0020948	Urb1	99	75.660	ENSCLAG00000005262	URB1	99	75.660	Chinchilla_lanigera
MGP_CAROLIEiJ_G0020948	Urb1	99	74.726	ENSCSAG00000009584	URB1	99	74.595	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0020948	Urb1	99	56.950	ENSCPBG00000006454	URB1	99	56.993	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0020948	Urb1	99	75.627	ENSCANG00000031088	URB1	99	75.627	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0020948	Urb1	98	85.905	ENSCGRG00001010616	Urb1	100	85.601	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0020948	Urb1	98	85.380	ENSCGRG00000015840	Urb1	100	85.380	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0020948	Urb1	97	48.469	ENSCSEG00000012616	urb1	99	48.469	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0020948	Urb1	92	51.303	ENSCVAG00000009076	urb1	98	51.468	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0020948	Urb1	99	43.039	ENSDARG00000060308	urb1	99	43.389	Danio_rerio
MGP_CAROLIEiJ_G0020948	Urb1	85	73.657	ENSDNOG00000015586	URB1	99	73.657	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.748	ENSDORG00000006735	Urb1	99	75.748	Dipodomys_ordii
MGP_CAROLIEiJ_G0020948	Urb1	92	74.000	ENSETEG00000009080	URB1	92	74.000	Echinops_telfairi
MGP_CAROLIEiJ_G0020948	Urb1	99	73.909	ENSEASG00005007711	URB1	99	73.251	Equus_asinus_asinus
MGP_CAROLIEiJ_G0020948	Urb1	97	81.767	ENSECAG00000013206	URB1	99	81.767	Equus_caballus
MGP_CAROLIEiJ_G0020948	Urb1	55	82.573	ENSEEUG00000003626	-	55	82.573	Erinaceus_europaeus
MGP_CAROLIEiJ_G0020948	Urb1	98	43.744	ENSELUG00000020516	urb1	98	43.901	Esox_lucius
MGP_CAROLIEiJ_G0020948	Urb1	99	73.272	ENSFCAG00000002177	URB1	99	73.295	Felis_catus
MGP_CAROLIEiJ_G0020948	Urb1	97	50.243	ENSFALG00000004636	URB1	99	50.330	Ficedula_albicollis
MGP_CAROLIEiJ_G0020948	Urb1	99	75.429	ENSFDAG00000007288	URB1	95	75.429	Fukomys_damarensis
MGP_CAROLIEiJ_G0020948	Urb1	98	41.161	ENSFHEG00000000202	urb1	98	42.265	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0020948	Urb1	90	46.567	ENSGMOG00000001838	urb1	91	46.567	Gadus_morhua
MGP_CAROLIEiJ_G0020948	Urb1	99	54.950	ENSGALG00000015887	URB1	99	54.950	Gallus_gallus
MGP_CAROLIEiJ_G0020948	Urb1	95	52.670	ENSGAFG00000020694	urb1	99	52.693	Gambusia_affinis
MGP_CAROLIEiJ_G0020948	Urb1	98	43.612	ENSGACG00000011703	urb1	99	43.612	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0020948	Urb1	99	56.508	ENSGAGG00000022544	URB1	99	56.508	Gopherus_agassizii
MGP_CAROLIEiJ_G0020948	Urb1	99	76.067	ENSGGOG00000000285	URB1	99	76.067	Gorilla_gorilla
MGP_CAROLIEiJ_G0020948	Urb1	99	44.180	ENSHBUG00000001904	urb1	99	44.180	Haplochromis_burtoni
MGP_CAROLIEiJ_G0020948	Urb1	99	74.143	ENSHGLG00000004907	URB1	99	74.143	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0020948	Urb1	99	74.593	ENSHGLG00100010749	URB1	99	74.593	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0020948	Urb1	70	51.248	ENSHCOG00000018683	urb1	97	51.823	Hippocampus_comes
MGP_CAROLIEiJ_G0020948	Urb1	99	40.000	ENSIPUG00000014721	urb1	99	40.000	Ictalurus_punctatus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.561	ENSSTOG00000004539	URB1	99	75.561	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0020948	Urb1	99	45.541	ENSKMAG00000006001	urb1	99	47.027	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0020948	Urb1	97	40.559	ENSLBEG00000027208	urb1	99	49.842	Labrus_bergylta
MGP_CAROLIEiJ_G0020948	Urb1	99	47.064	ENSLACG00000017059	URB1	100	47.110	Latimeria_chalumnae
MGP_CAROLIEiJ_G0020948	Urb1	97	45.265	ENSLOCG00000009190	urb1	97	45.221	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0020948	Urb1	99	71.554	ENSLAFG00000010407	URB1	100	71.554	Loxodonta_africana
MGP_CAROLIEiJ_G0020948	Urb1	99	75.671	ENSMFAG00000034391	URB1	97	75.671	Macaca_fascicularis
MGP_CAROLIEiJ_G0020948	Urb1	99	75.539	ENSMMUG00000010295	URB1	99	75.539	Macaca_mulatta
MGP_CAROLIEiJ_G0020948	Urb1	99	74.582	ENSMNEG00000032981	URB1	99	74.582	Macaca_nemestrina
MGP_CAROLIEiJ_G0020948	Urb1	99	75.803	ENSMLEG00000041435	URB1	99	75.803	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0020948	Urb1	99	41.681	ENSMAMG00000011238	urb1	99	41.681	Mastacembelus_armatus
MGP_CAROLIEiJ_G0020948	Urb1	99	41.378	ENSMZEG00005011862	urb1	99	41.378	Maylandia_zebra
MGP_CAROLIEiJ_G0020948	Urb1	98	54.949	ENSMGAG00000014512	URB1	99	54.949	Meleagris_gallopavo
MGP_CAROLIEiJ_G0020948	Urb1	93	83.358	ENSMAUG00000010516	Urb1	100	83.504	Mesocricetus_auratus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.143	ENSMICG00000016424	URB1	99	75.143	Microcebus_murinus
MGP_CAROLIEiJ_G0020948	Urb1	99	84.897	ENSMOCG00000012613	Urb1	99	84.897	Microtus_ochrogaster
MGP_CAROLIEiJ_G0020948	Urb1	99	60.683	ENSMODG00000021076	URB1	99	60.683	Monodelphis_domestica
MGP_CAROLIEiJ_G0020948	Urb1	96	43.019	ENSMALG00000017411	urb1	97	51.579	Monopterus_albus
MGP_CAROLIEiJ_G0020948	Urb1	99	97.188	ENSMUSG00000039929	Urb1	99	97.188	Mus_musculus
MGP_CAROLIEiJ_G0020948	Urb1	100	94.379	MGP_PahariEiJ_G0016653	Urb1	100	94.379	Mus_pahari
MGP_CAROLIEiJ_G0020948	Urb1	99	97.144	MGP_SPRETEiJ_G0021854	Urb1	99	97.144	Mus_spretus
MGP_CAROLIEiJ_G0020948	Urb1	99	72.855	ENSMPUG00000001123	URB1	99	72.855	Mustela_putorius_furo
MGP_CAROLIEiJ_G0020948	Urb1	99	77.251	ENSNGAG00000001905	Urb1	100	77.251	Nannospalax_galili
MGP_CAROLIEiJ_G0020948	Urb1	80	45.028	ENSNBRG00000001049	urb1	98	44.890	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0020948	Urb1	99	73.886	ENSNLEG00000026872	URB1	99	73.779	Nomascus_leucogenys
MGP_CAROLIEiJ_G0020948	Urb1	95	56.366	ENSMEUG00000010828	URB1	96	56.558	Notamacropus_eugenii
MGP_CAROLIEiJ_G0020948	Urb1	99	68.220	ENSOPRG00000013482	URB1	100	68.220	Ochotona_princeps
MGP_CAROLIEiJ_G0020948	Urb1	99	74.428	ENSODEG00000002587	URB1	99	74.428	Octodon_degus
MGP_CAROLIEiJ_G0020948	Urb1	99	44.328	ENSONIG00000005599	urb1	99	44.328	Oreochromis_niloticus
MGP_CAROLIEiJ_G0020948	Urb1	99	73.580	ENSOCUG00000009381	URB1	99	73.580	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0020948	Urb1	99	43.165	ENSORLG00000003429	urb1	99	43.165	Oryzias_latipes
MGP_CAROLIEiJ_G0020948	Urb1	99	43.089	ENSORLG00020013785	urb1	99	43.152	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0020948	Urb1	99	41.909	ENSORLG00015019421	urb1	97	45.979	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0020948	Urb1	76	50.410	ENSOMEG00000002094	urb1	97	50.410	Oryzias_melastigma
MGP_CAROLIEiJ_G0020948	Urb1	99	74.736	ENSOGAG00000017140	URB1	99	74.736	Otolemur_garnettii
MGP_CAROLIEiJ_G0020948	Urb1	97	72.367	ENSOARG00000013679	URB1	99	72.199	Ovis_aries
MGP_CAROLIEiJ_G0020948	Urb1	99	76.199	ENSPPAG00000003423	URB1	99	76.199	Pan_paniscus
MGP_CAROLIEiJ_G0020948	Urb1	99	73.689	ENSPPRG00000023131	URB1	99	73.689	Panthera_pardus
MGP_CAROLIEiJ_G0020948	Urb1	91	72.405	ENSPTIG00000016125	URB1	98	72.405	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0020948	Urb1	99	76.067	ENSPTRG00000013852	URB1	99	76.067	Pan_troglodytes
MGP_CAROLIEiJ_G0020948	Urb1	99	76.023	ENSPANG00000021964	URB1	99	76.023	Papio_anubis
MGP_CAROLIEiJ_G0020948	Urb1	98	45.519	ENSPKIG00000003683	urb1	98	45.607	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0020948	Urb1	99	85.469	ENSPEMG00000021205	Urb1	99	85.469	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0020948	Urb1	77	33.624	ENSPMAG00000009733	URB1	100	33.229	Petromyzon_marinus
MGP_CAROLIEiJ_G0020948	Urb1	99	60.736	ENSPCIG00000016350	URB1	99	60.881	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0020948	Urb1	95	42.883	ENSPLAG00000004371	urb1	99	42.792	Poecilia_latipinna
MGP_CAROLIEiJ_G0020948	Urb1	99	43.413	ENSPMEG00000006634	urb1	99	43.413	Poecilia_mexicana
MGP_CAROLIEiJ_G0020948	Urb1	98	43.761	ENSPREG00000013453	urb1	98	43.761	Poecilia_reticulata
MGP_CAROLIEiJ_G0020948	Urb1	99	75.562	ENSPPYG00000011359	URB1	99	75.451	Pongo_abelii
MGP_CAROLIEiJ_G0020948	Urb1	99	62.467	ENSPCAG00000007430	URB1	99	62.819	Procavia_capensis
MGP_CAROLIEiJ_G0020948	Urb1	99	76.188	ENSPCOG00000022695	URB1	99	76.188	Propithecus_coquereli
MGP_CAROLIEiJ_G0020948	Urb1	99	72.063	ENSPVAG00000000889	URB1	99	72.063	Pteropus_vampyrus
MGP_CAROLIEiJ_G0020948	Urb1	99	43.255	ENSPNYG00000010589	urb1	99	43.255	Pundamilia_nyererei
MGP_CAROLIEiJ_G0020948	Urb1	99	39.531	ENSPNAG00000019324	urb1	99	39.661	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0020948	Urb1	100	90.650	ENSRNOG00000002080	Urb1	100	90.781	Rattus_norvegicus
MGP_CAROLIEiJ_G0020948	Urb1	99	75.451	ENSRBIG00000033122	URB1	99	75.451	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0020948	Urb1	99	75.539	ENSRROG00000040237	URB1	99	75.495	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0020948	Urb1	99	76.121	ENSSBOG00000027672	URB1	99	76.121	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0020948	Urb1	99	60.700	ENSSHAG00000005140	URB1	100	60.656	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0020948	Urb1	92	45.630	ENSSFOG00015000339	urb1	99	45.677	Scleropages_formosus
MGP_CAROLIEiJ_G0020948	Urb1	99	42.925	ENSSMAG00000003782	urb1	99	42.925	Scophthalmus_maximus
MGP_CAROLIEiJ_G0020948	Urb1	99	43.567	ENSSDUG00000012313	urb1	99	43.567	Seriola_dumerili
MGP_CAROLIEiJ_G0020948	Urb1	99	43.418	ENSSLDG00000023179	urb1	99	43.461	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0020948	Urb1	99	53.154	ENSSPUG00000012447	URB1	99	53.154	Sphenodon_punctatus
MGP_CAROLIEiJ_G0020948	Urb1	99	43.654	ENSSPAG00000006325	urb1	99	43.654	Stegastes_partitus
MGP_CAROLIEiJ_G0020948	Urb1	99	72.156	ENSSSCG00000032024	URB1	99	72.156	Sus_scrofa
MGP_CAROLIEiJ_G0020948	Urb1	73	56.947	ENSTGUG00000013442	URB1	100	56.947	Taeniopygia_guttata
MGP_CAROLIEiJ_G0020948	Urb1	98	43.676	ENSTRUG00000009372	urb1	98	43.632	Takifugu_rubripes
MGP_CAROLIEiJ_G0020948	Urb1	99	42.537	ENSTNIG00000016277	urb1	99	42.537	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0020948	Urb1	81	78.963	ENSTBEG00000010044	URB1	81	78.963	Tupaia_belangeri
MGP_CAROLIEiJ_G0020948	Urb1	90	74.008	ENSTTRG00000007712	URB1	92	74.426	Tursiops_truncatus
MGP_CAROLIEiJ_G0020948	Urb1	99	73.548	ENSUAMG00000012231	URB1	99	73.548	Ursus_americanus
MGP_CAROLIEiJ_G0020948	Urb1	90	75.187	ENSUMAG00000017419	URB1	97	75.299	Ursus_maritimus
MGP_CAROLIEiJ_G0020948	Urb1	68	84.921	ENSVPAG00000001164	URB1	68	84.921	Vicugna_pacos
MGP_CAROLIEiJ_G0020948	Urb1	99	73.659	ENSVVUG00000000551	URB1	99	73.659	Vulpes_vulpes
MGP_CAROLIEiJ_G0020948	Urb1	99	48.594	ENSXETG00000009895	urb1	99	48.594	Xenopus_tropicalis
MGP_CAROLIEiJ_G0020948	Urb1	99	41.285	ENSXCOG00000005500	urb1	99	41.285	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0020948	Urb1	99	41.358	ENSXMAG00000007253	urb1	99	41.358	Xiphophorus_maculatus