EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021016 (Gene tree)
Gene ID: 110312475
Gene Symbol: Scaf8
Alias: A630086M08Rik|A930036P18Rik|Rbm16
Full Name: SR-related CTD associated factor 8
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 81140 bases
Position: chr17:25339-106478
Accession: 110312475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0042565	RRM_1	PF00076.22	2.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0042565	-	4869	XM_021186088	MGP_CAROLIEiJ_P0042565	1268 (aa)	XP_021041747	UPI000A3159B4

Gene Model

Click here to download MGP_CAROLIEiJ_G0021016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021016's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.345	ENSG00000213079	SCAF8	100	91.345	Homo_sapiens
MGP_CAROLIEiJ_G0021016	Scaf8	86	69.448	ENSAPOG00000015527	SCAF8	77	69.080	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021016	Scaf8	100	89.466	ENSAMEG00000007583	SCAF8	97	89.466	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021016	Scaf8	86	69.571	ENSAOCG00000002421	SCAF8	76	69.202	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021016	Scaf8	84	60.409	ENSAPEG00000020115	SCAF8	78	60.281	Amphiprion_percula
MGP_CAROLIEiJ_G0021016	Scaf8	85	70.079	ENSATEG00000006959	SCAF8	97	69.382	Anabas_testudineus
MGP_CAROLIEiJ_G0021016	Scaf8	100	75.953	ENSAPLG00000005765	SCAF8	100	76.187	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021016	Scaf8	99	73.899	ENSACAG00000005282	SCAF8	99	73.821	Anolis_carolinensis
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.345	ENSANAG00000036184	SCAF8	100	91.345	Aotus_nancymaae
MGP_CAROLIEiJ_G0021016	Scaf8	82	72.906	ENSACLG00000018828	SCAF8	78	72.382	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.701	ENSBTAG00000031917	SCAF8	100	90.701	Bos_taurus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.345	ENSCJAG00000012631	SCAF8	97	89.861	Callithrix_jacchus
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.291	ENSCAFG00000000570	SCAF8	99	91.291	Canis_familiaris
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.284	ENSCAFG00020015048	SCAF8	99	91.232	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.386	ENSCHIG00000025041	SCAF8	100	90.386	Capra_hircus
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.132	ENSTSYG00000010991	SCAF8	97	91.132	Carlito_syrichta
MGP_CAROLIEiJ_G0021016	Scaf8	99	83.465	ENSCPOG00000022216	-	99	82.674	Cavia_porcellus
MGP_CAROLIEiJ_G0021016	Scaf8	100	78.993	ENSCPOG00000030311	-	100	77.987	Cavia_porcellus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.424	ENSCCAG00000024952	SCAF8	100	91.424	Cebus_capucinus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.739	ENSCATG00000035361	SCAF8	100	91.739	Cercocebus_atys
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.017	ENSCLAG00000004910	SCAF8	100	91.501	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.325	ENSCSAG00000013430	SCAF8	100	90.325	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021016	Scaf8	100	73.529	ENSCPBG00000016330	SCAF8	100	72.469	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.503	ENSCANG00000039499	SCAF8	99	91.435	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021016	Scaf8	100	95.745	ENSCGRG00001020167	Scaf8	100	95.745	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021016	Scaf8	99	95.635	ENSCGRG00000004120	Scaf8	99	95.635	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021016	Scaf8	83	69.685	ENSCSEG00000000043	-	76	70.997	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021016	Scaf8	89	66.361	ENSCVAG00000000925	SCAF8	77	65.838	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021016	Scaf8	96	85.714	ENSDNOG00000025271	SCAF8	100	89.080	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021016	Scaf8	99	90.221	ENSDORG00000006391	Scaf8	100	90.300	Dipodomys_ordii
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.188	ENSEASG00005018879	SCAF8	100	91.188	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.339	ENSECAG00000005540	SCAF8	100	91.339	Equus_caballus
MGP_CAROLIEiJ_G0021016	Scaf8	81	70.725	ENSELUG00000002779	SCAF8	97	67.626	Esox_lucius
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.339	ENSFCAG00000023424	SCAF8	100	91.339	Felis_catus
MGP_CAROLIEiJ_G0021016	Scaf8	100	75.545	ENSFALG00000012433	SCAF8	100	75.720	Ficedula_albicollis
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.244	ENSFDAG00000010335	SCAF8	100	90.244	Fukomys_damarensis
MGP_CAROLIEiJ_G0021016	Scaf8	88	71.073	ENSFHEG00000008284	SCAF8	77	70.812	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021016	Scaf8	80	57.869	ENSGMOG00000018812	SCAF8	83	59.433	Gadus_morhua
MGP_CAROLIEiJ_G0021016	Scaf8	99	76.869	ENSGALG00000013635	SCAF8	99	76.480	Gallus_gallus
MGP_CAROLIEiJ_G0021016	Scaf8	50	59.544	ENSGAFG00000018033	SCAF8	78	66.626	Gambusia_affinis
MGP_CAROLIEiJ_G0021016	Scaf8	82	68.800	ENSGACG00000006909	SCAF8	93	70.267	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021016	Scaf8	63	69.420	ENSGAGG00000017820	-	88	69.420	Gopherus_agassizii
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.267	ENSGGOG00000008645	SCAF8	100	91.267	Gorilla_gorilla
MGP_CAROLIEiJ_G0021016	Scaf8	82	72.775	ENSHBUG00000019537	SCAF8	78	72.251	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.109	ENSHGLG00000003619	SCAF8	100	91.109	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.480	ENSHGLG00100004708	SCAF8	100	91.039	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.851	ENSSTOG00000026043	SCAF8	99	91.851	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.024	ENSJJAG00000020480	Scaf8	100	91.024	Jaculus_jaculus
MGP_CAROLIEiJ_G0021016	Scaf8	86	68.796	ENSKMAG00000012767	SCAF8	78	68.428	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021016	Scaf8	59	76.296	ENSLBEG00000012484	-	57	75.926	Labrus_bergylta
MGP_CAROLIEiJ_G0021016	Scaf8	90	73.641	ENSLACG00000001394	SCAF8	99	72.209	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021016	Scaf8	100	60.751	ENSLOCG00000016856	SCAF8	100	60.047	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021016	Scaf8	100	89.395	ENSLAFG00000000022	SCAF8	100	89.945	Loxodonta_africana
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.817	ENSMFAG00000032738	SCAF8	100	91.817	Macaca_fascicularis
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.817	ENSMMUG00000015163	SCAF8	100	91.817	Macaca_mulatta
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.817	ENSMNEG00000043466	SCAF8	100	91.817	Macaca_nemestrina
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.753	ENSMLEG00000034845	SCAF8	99	91.753	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021016	Scaf8	83	65.885	ENSMAMG00000009457	SCAF8	76	64.974	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021016	Scaf8	82	72.775	ENSMZEG00005005698	SCAF8	78	72.251	Maylandia_zebra
MGP_CAROLIEiJ_G0021016	Scaf8	99	75.655	ENSMGAG00000012762	SCAF8	100	76.205	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021016	Scaf8	99	95.155	ENSMAUG00000009513	Scaf8	100	95.155	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.802	ENSMICG00000028965	SCAF8	100	90.645	Microcebus_murinus
MGP_CAROLIEiJ_G0021016	Scaf8	100	95.902	ENSMOCG00000014950	Scaf8	100	95.902	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021016	Scaf8	81	67.385	ENSMMOG00000002216	SCAF8	75	66.307	Mola_mola
MGP_CAROLIEiJ_G0021016	Scaf8	99	84.415	ENSMODG00000008301	SCAF8	99	84.415	Monodelphis_domestica
MGP_CAROLIEiJ_G0021016	Scaf8	86	68.299	ENSMALG00000011584	SCAF8	76	71.186	Monopterus_albus
MGP_CAROLIEiJ_G0021016	Scaf8	100	99.290	ENSMUSG00000046201	Scaf8	100	99.290	Mus_musculus
MGP_CAROLIEiJ_G0021016	Scaf8	100	98.423	MGP_PahariEiJ_G0023334	Scaf8	100	98.423	Mus_pahari
MGP_CAROLIEiJ_G0021016	Scaf8	100	89.466	ENSMPUG00000001974	SCAF8	100	89.466	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021016	Scaf8	100	89.213	ENSMLUG00000029190	SCAF8	100	89.213	Myotis_lucifugus
MGP_CAROLIEiJ_G0021016	Scaf8	100	92.987	ENSNGAG00000012332	Scaf8	100	92.987	Nannospalax_galili
MGP_CAROLIEiJ_G0021016	Scaf8	100	53.082	ENSNBRG00000009067	SCAF8	100	52.701	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.031	ENSNLEG00000015509	SCAF8	99	89.701	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021016	Scaf8	70	90.179	ENSOPRG00000018413	-	76	91.011	Ochotona_princeps
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.645	ENSODEG00000007296	SCAF8	100	90.645	Octodon_degus
MGP_CAROLIEiJ_G0021016	Scaf8	100	55.298	ENSONIG00000008119	SCAF8	99	54.764	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021016	Scaf8	99	92.247	ENSOCUG00000026063	SCAF8	99	92.247	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021016	Scaf8	93	56.543	ENSORLG00000017358	SCAF8	75	71.597	Oryzias_latipes
MGP_CAROLIEiJ_G0021016	Scaf8	93	56.579	ENSORLG00020002214	SCAF8	75	71.597	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021016	Scaf8	93	56.543	ENSORLG00015015779	SCAF8	75	71.859	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021016	Scaf8	93	56.302	ENSOMEG00000015471	SCAF8	75	71.859	Oryzias_melastigma
MGP_CAROLIEiJ_G0021016	Scaf8	100	89.551	ENSOGAG00000034223	SCAF8	97	89.551	Otolemur_garnettii
MGP_CAROLIEiJ_G0021016	Scaf8	99	90.159	ENSOARG00000004159	SCAF8	100	90.159	Ovis_aries
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.188	ENSPPAG00000039826	SCAF8	100	91.188	Pan_paniscus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.339	ENSPPRG00000023175	SCAF8	100	91.339	Panthera_pardus
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.204	ENSPTIG00000014836	SCAF8	100	91.204	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.345	ENSPTRG00000018727	SCAF8	100	91.345	Pan_troglodytes
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.660	ENSPANG00000017489	SCAF8	100	89.693	Papio_anubis
MGP_CAROLIEiJ_G0021016	Scaf8	60	76.047	ENSPKIG00000021212	SCAF8	98	74.607	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021016	Scaf8	89	69.728	ENSPSIG00000008614	SCAF8	99	70.513	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021016	Scaf8	99	95.711	ENSPEMG00000010531	Scaf8	100	95.711	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021016	Scaf8	100	84.748	ENSPCIG00000001141	SCAF8	100	84.748	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021016	Scaf8	56	59.375	ENSPFOG00000004176	SCAF8	100	54.436	Poecilia_formosa
MGP_CAROLIEiJ_G0021016	Scaf8	92	68.758	ENSPLAG00000021432	SCAF8	77	65.367	Poecilia_latipinna
MGP_CAROLIEiJ_G0021016	Scaf8	56	59.375	ENSPMEG00000007591	SCAF8	84	64.833	Poecilia_mexicana
MGP_CAROLIEiJ_G0021016	Scaf8	86	68.635	ENSPREG00000000652	SCAF8	77	68.143	Poecilia_reticulata
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.024	ENSPPYG00000017121	SCAF8	100	89.709	Pongo_abelii
MGP_CAROLIEiJ_G0021016	Scaf8	85	95.812	ENSPCAG00000013044	SCAF8	90	95.812	Procavia_capensis
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.116	ENSPCOG00000002067	SCAF8	99	90.887	Propithecus_coquereli
MGP_CAROLIEiJ_G0021016	Scaf8	98	88.320	ENSPVAG00000005582	SCAF8	99	89.440	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021016	Scaf8	82	72.906	ENSPNYG00000007277	SCAF8	78	72.382	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021016	Scaf8	87	68.010	ENSPNAG00000024740	SCAF8	82	68.337	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021016	Scaf8	100	96.924	ENSRNOG00000016919	Scaf8	100	96.924	Rattus_norvegicus
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.581	ENSRBIG00000035769	SCAF8	100	91.581	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.503	ENSRROG00000013580	SCAF8	100	91.503	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021016	Scaf8	100	91.345	ENSSBOG00000027023	SCAF8	100	91.345	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021016	Scaf8	100	84.289	ENSSHAG00000009915	SCAF8	100	84.289	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021016	Scaf8	100	54.588	ENSSFOG00015009481	SCAF8	100	52.814	Scleropages_formosus
MGP_CAROLIEiJ_G0021016	Scaf8	87	72.288	ENSSMAG00000008275	SCAF8	77	71.634	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021016	Scaf8	100	75.472	ENSSPUG00000015219	SCAF8	100	75.774	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021016	Scaf8	50	59.322	ENSSPAG00000019433	SCAF8	74	64.834	Stegastes_partitus
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.709	ENSSSCG00000004070	SCAF8	100	90.709	Sus_scrofa
MGP_CAROLIEiJ_G0021016	Scaf8	99	77.201	ENSTGUG00000011151	SCAF8	100	77.358	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021016	Scaf8	82	70.196	ENSTRUG00000009243	SCAF8	78	69.935	Takifugu_rubripes
MGP_CAROLIEiJ_G0021016	Scaf8	93	65.291	ENSTNIG00000016885	SCAF8	99	54.866	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021016	Scaf8	99	90.000	ENSTTRG00000014538	SCAF8	100	90.000	Tursiops_truncatus
MGP_CAROLIEiJ_G0021016	Scaf8	100	90.866	ENSUAMG00000024736	SCAF8	99	90.794	Ursus_americanus
MGP_CAROLIEiJ_G0021016	Scaf8	98	90.763	ENSUMAG00000013404	SCAF8	100	90.763	Ursus_maritimus
MGP_CAROLIEiJ_G0021016	Scaf8	67	81.607	ENSVPAG00000012465	SCAF8	99	81.156	Vicugna_pacos
MGP_CAROLIEiJ_G0021016	Scaf8	99	91.363	ENSVVUG00000007532	SCAF8	100	91.325	Vulpes_vulpes
MGP_CAROLIEiJ_G0021016	Scaf8	100	60.809	ENSXETG00000013132	scaf8	100	60.903	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021016	Scaf8	92	68.635	ENSXMAG00000019192	SCAF8	78	68.266	Xiphophorus_maculatus