EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021026 (Gene tree)
Gene ID: 110312552
Gene Symbol: Synj2
Alias: SJ2
Full Name: synaptojanin 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 97691 bases
Position: chr17:2814719-2912409
Accession: 110312552
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0042587	Exo_endo_phos	PF03372.23	4.9e-14	1	1
MGP_CAROLIEiJ_P0042596	Exo_endo_phos	PF03372.23	5.2e-14	1	1
MGP_CAROLIEiJ_P0042593	Exo_endo_phos	PF03372.23	7.7e-14	1	1
MGP_CAROLIEiJ_P0042590	Exo_endo_phos	PF03372.23	1.2e-13	1	1
MGP_CAROLIEiJ_P0042583	Exo_endo_phos	PF03372.23	1.4e-13	1	1
MGP_CAROLIEiJ_P0042594	Exo_endo_phos	PF03372.23	1.4e-13	1	1
MGP_CAROLIEiJ_P0042588	Exo_endo_phos	PF03372.23	1.6e-13	1	1
MGP_CAROLIEiJ_P0042591	Exo_endo_phos	PF03372.23	1.6e-13	1	1
MGP_CAROLIEiJ_P0042589	Exo_endo_phos	PF03372.23	1.8e-13	1	1
MGP_CAROLIEiJ_P0042585	Exo_endo_phos	PF03372.23	2.2e-13	1	1
MGP_CAROLIEiJ_P0042586	Exo_endo_phos	PF03372.23	2.2e-13	1	1
MGP_CAROLIEiJ_P0042592	Exo_endo_phos	PF03372.23	1.2e-08	1	1
MGP_CAROLIEiJ_P0042597	DUF1866	PF08952.11	3e-60	1	1
MGP_CAROLIEiJ_P0042596	DUF1866	PF08952.11	8.1e-60	1	1
MGP_CAROLIEiJ_P0042593	DUF1866	PF08952.11	9.3e-60	1	1
MGP_CAROLIEiJ_P0042590	DUF1866	PF08952.11	1.4e-59	1	1
MGP_CAROLIEiJ_P0042583	DUF1866	PF08952.11	1.6e-59	1	1
MGP_CAROLIEiJ_P0042594	DUF1866	PF08952.11	1.6e-59	1	1
MGP_CAROLIEiJ_P0042588	DUF1866	PF08952.11	1.7e-59	1	1
MGP_CAROLIEiJ_P0042591	DUF1866	PF08952.11	1.8e-59	1	1
MGP_CAROLIEiJ_P0042589	DUF1866	PF08952.11	1.9e-59	1	1
MGP_CAROLIEiJ_P0042585	DUF1866	PF08952.11	2.2e-59	1	1
MGP_CAROLIEiJ_P0042586	DUF1866	PF08952.11	2.3e-59	1	1
MGP_CAROLIEiJ_P0042587	DUF1866	PF08952.11	6.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0042596	-	2792	-	MGP_CAROLIEiJ_P0042596	725 (aa)	-	-
MGP_CAROLIEiJ_T0042590	-	3498	-	MGP_CAROLIEiJ_P0042590	1016 (aa)	-	-
MGP_CAROLIEiJ_T0042597	-	1260	-	MGP_CAROLIEiJ_P0042597	384 (aa)	-	-
MGP_CAROLIEiJ_T0042594	-	3775	-	MGP_CAROLIEiJ_P0042594	1118 (aa)	XP_021041900	UPI000A315DE0
MGP_CAROLIEiJ_T0042595	-	460	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0042585	-	4790	XM_021186239	MGP_CAROLIEiJ_P0042585	1434 (aa)	XP_021041898	UPI000A315C0F
MGP_CAROLIEiJ_T0042584	-	5553	-	MGP_CAROLIEiJ_P0042584	84 (aa)	-	UPI00033352A7
MGP_CAROLIEiJ_T0042587	-	2524	-	MGP_CAROLIEiJ_P0042587	660 (aa)	-	-
MGP_CAROLIEiJ_T0042586	-	4440	-	MGP_CAROLIEiJ_P0042586	1479 (aa)	XP_021041896	UPI000A317FFC
MGP_CAROLIEiJ_T0042592	-	2519	-	MGP_CAROLIEiJ_P0042592	535 (aa)	-	-
MGP_CAROLIEiJ_T0042593	-	2634	-	MGP_CAROLIEiJ_P0042593	824 (aa)	-	-
MGP_CAROLIEiJ_T0042583	-	3550	-	MGP_CAROLIEiJ_P0042583	1144 (aa)	-	-
MGP_CAROLIEiJ_T0042591	-	4013	-	MGP_CAROLIEiJ_P0042591	1194 (aa)	-	-
MGP_CAROLIEiJ_T0042589	-	5140	-	MGP_CAROLIEiJ_P0042589	1273 (aa)	-	-
MGP_CAROLIEiJ_T0042588	-	4078	-	MGP_CAROLIEiJ_P0042588	1216 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021026's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021026's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021026	Synj2	99	59.731	MGP_CAROLIEiJ_G0020951	Synj1	100	59.914
MGP_CAROLIEiJ_G0021026	Synj2	58	33.163	MGP_CAROLIEiJ_G0033035	Ocrl	50	32.524
MGP_CAROLIEiJ_G0021026	Synj2	50	34.718	MGP_CAROLIEiJ_G0016012	Inpp5j	56	34.118

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSG00000078269	SYNJ2	99	86.854	Homo_sapiens
MGP_CAROLIEiJ_G0021026	Synj2	100	91.515	ENSAMEG00000009581	SYNJ2	99	79.917	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021026	Synj2	100	84.871	ENSAPLG00000002563	SYNJ2	99	69.794	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021026	Synj2	100	81.970	ENSACAG00000004945	SYNJ2	90	70.610	Anolis_carolinensis
MGP_CAROLIEiJ_G0021026	Synj2	100	93.041	ENSANAG00000026575	SYNJ2	99	86.766	Aotus_nancymaae
MGP_CAROLIEiJ_G0021026	Synj2	100	90.166	ENSBTAG00000000817	SYNJ2	99	80.956	Bos_taurus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.738	ENSCJAG00000003570	SYNJ2	99	86.922	Callithrix_jacchus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.273	ENSCAFG00000000644	SYNJ2	99	83.172	Canis_familiaris
MGP_CAROLIEiJ_G0021026	Synj2	100	92.273	ENSCAFG00020015809	SYNJ2	98	86.877	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021026	Synj2	100	89.394	ENSCHIG00000011077	SYNJ2	99	80.804	Capra_hircus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.727	ENSTSYG00000014342	SYNJ2	96	87.601	Carlito_syrichta
MGP_CAROLIEiJ_G0021026	Synj2	100	88.601	ENSCAPG00000000287	SYNJ2	100	88.601	Cavia_aperea
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSCPOG00000009144	SYNJ2	100	90.283	Cavia_porcellus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.738	ENSCCAG00000025484	SYNJ2	99	86.688	Cebus_capucinus
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSCATG00000042943	SYNJ2	99	87.089	Cercocebus_atys
MGP_CAROLIEiJ_G0021026	Synj2	100	93.788	ENSCLAG00000004730	SYNJ2	99	85.666	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021026	Synj2	100	93.030	ENSCSAG00000013130	SYNJ2	99	83.701	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021026	Synj2	56	94.595	ENSCHOG00000000343	-	52	94.595	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021026	Synj2	100	85.174	ENSCPBG00000016273	SYNJ2	98	70.596	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021026	Synj2	100	93.030	ENSCANG00000040349	SYNJ2	99	87.258	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021026	Synj2	100	96.818	ENSCGRG00001004257	Synj2	99	94.118	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021026	Synj2	100	96.818	ENSCGRG00000001656	Synj2	99	94.118	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021026	Synj2	99	85.281	ENSDNOG00000015900	SYNJ2	99	79.676	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.727	ENSDORG00000014128	Synj2	98	82.188	Dipodomys_ordii
MGP_CAROLIEiJ_G0021026	Synj2	87	90.342	ENSETEG00000017418	SYNJ2	81	90.761	Echinops_telfairi
MGP_CAROLIEiJ_G0021026	Synj2	100	92.879	ENSEASG00005018902	SYNJ2	99	83.981	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.879	ENSECAG00000012646	SYNJ2	93	83.927	Equus_caballus
MGP_CAROLIEiJ_G0021026	Synj2	63	78.571	ENSEEUG00000015796	-	57	78.571	Erinaceus_europaeus
MGP_CAROLIEiJ_G0021026	Synj2	100	91.667	ENSFCAG00000010854	SYNJ2	98	87.050	Felis_catus
MGP_CAROLIEiJ_G0021026	Synj2	100	82.148	ENSFALG00000012593	SYNJ2	98	68.304	Ficedula_albicollis
MGP_CAROLIEiJ_G0021026	Synj2	100	91.970	ENSFDAG00000016352	SYNJ2	97	90.701	Fukomys_damarensis
MGP_CAROLIEiJ_G0021026	Synj2	99	84.545	ENSGALG00000013727	SYNJ2	90	74.022	Gallus_gallus
MGP_CAROLIEiJ_G0021026	Synj2	100	84.569	ENSGAGG00000009857	SYNJ2	98	70.152	Gopherus_agassizii
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSGGOG00000012210	SYNJ2	99	87.089	Gorilla_gorilla
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSHGLG00000007534	SYNJ2	95	91.656	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSHGLG00100009973	SYNJ2	100	87.824	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021026	Synj2	100	94.394	ENSSTOG00000016474	SYNJ2	99	85.058	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021026	Synj2	100	94.697	ENSJJAG00000014436	Synj2	99	91.892	Jaculus_jaculus
MGP_CAROLIEiJ_G0021026	Synj2	100	74.849	ENSLACG00000007316	SYNJ2	99	68.703	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021026	Synj2	100	89.259	ENSLAFG00000011979	SYNJ2	99	80.387	Loxodonta_africana
MGP_CAROLIEiJ_G0021026	Synj2	92	91.935	ENSMFAG00000040552	SYNJ2	99	90.417	Macaca_fascicularis
MGP_CAROLIEiJ_G0021026	Synj2	100	93.333	ENSMMUG00000007153	SYNJ2	99	86.994	Macaca_mulatta
MGP_CAROLIEiJ_G0021026	Synj2	100	93.485	ENSMNEG00000017211	SYNJ2	99	87.167	Macaca_nemestrina
MGP_CAROLIEiJ_G0021026	Synj2	100	86.911	ENSMLEG00000024911	SYNJ2	99	80.494	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021026	Synj2	99	82.301	ENSMGAG00000012839	SYNJ2	98	73.134	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021026	Synj2	100	96.515	ENSMAUG00000022212	Synj2	100	92.708	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021026	Synj2	100	91.061	ENSMICG00000015804	SYNJ2	97	86.848	Microcebus_murinus
MGP_CAROLIEiJ_G0021026	Synj2	100	96.667	ENSMOCG00000020054	Synj2	99	94.243	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021026	Synj2	100	90.758	ENSMODG00000007783	SYNJ2	99	78.319	Monodelphis_domestica
MGP_CAROLIEiJ_G0021026	Synj2	100	99.394	ENSMUSG00000023805	Synj2	100	99.394	Mus_musculus
MGP_CAROLIEiJ_G0021026	Synj2	100	98.485	MGP_PahariEiJ_G0023344	Synj2	100	98.485	Mus_pahari
MGP_CAROLIEiJ_G0021026	Synj2	100	98.788	MGP_SPRETEiJ_G0021931	Synj2	100	98.788	Mus_spretus
MGP_CAROLIEiJ_G0021026	Synj2	100	88.030	ENSMPUG00000005323	SYNJ2	98	84.061	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021026	Synj2	100	91.667	ENSMLUG00000000324	SYNJ2	99	80.835	Myotis_lucifugus
MGP_CAROLIEiJ_G0021026	Synj2	100	95.606	ENSNGAG00000014859	Synj2	98	93.383	Nannospalax_galili
MGP_CAROLIEiJ_G0021026	Synj2	100	90.512	ENSNLEG00000010750	SYNJ2	99	82.727	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021026	Synj2	93	85.847	ENSMEUG00000003493	SYNJ2	94	82.020	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021026	Synj2	93	86.992	ENSOPRG00000009648	SYNJ2	93	78.830	Ochotona_princeps
MGP_CAROLIEiJ_G0021026	Synj2	100	93.182	ENSODEG00000007709	SYNJ2	100	88.601	Octodon_degus
MGP_CAROLIEiJ_G0021026	Synj2	90	65.000	ENSOANG00000029828	-	99	60.060	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021026	Synj2	100	90.000	ENSOCUG00000004762	SYNJ2	99	80.481	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.296	ENSOGAG00000000488	SYNJ2	100	87.381	Otolemur_garnettii
MGP_CAROLIEiJ_G0021026	Synj2	100	89.410	ENSOARG00000004304	SYNJ2	99	80.069	Ovis_aries
MGP_CAROLIEiJ_G0021026	Synj2	100	93.333	ENSPPAG00000028831	SYNJ2	99	83.088	Pan_paniscus
MGP_CAROLIEiJ_G0021026	Synj2	100	91.818	ENSPPRG00000009068	SYNJ2	98	87.130	Panthera_pardus
MGP_CAROLIEiJ_G0021026	Synj2	100	91.364	ENSPTIG00000018780	SYNJ2	94	86.755	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021026	Synj2	100	93.333	ENSPTRG00000018739	SYNJ2	99	88.640	Pan_troglodytes
MGP_CAROLIEiJ_G0021026	Synj2	100	93.333	ENSPANG00000010755	SYNJ2	99	87.167	Papio_anubis
MGP_CAROLIEiJ_G0021026	Synj2	100	84.569	ENSPSIG00000014659	SYNJ2	98	69.876	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021026	Synj2	100	96.061	ENSPEMG00000006247	Synj2	100	92.208	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021026	Synj2	100	89.848	ENSPCIG00000010179	SYNJ2	99	78.252	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021026	Synj2	100	93.485	ENSPPYG00000017130	SYNJ2	99	84.048	Pongo_abelii
MGP_CAROLIEiJ_G0021026	Synj2	91	93.548	ENSPCAG00000009217	SYNJ2	90	93.548	Procavia_capensis
MGP_CAROLIEiJ_G0021026	Synj2	100	92.273	ENSPCOG00000026910	SYNJ2	97	88.132	Propithecus_coquereli
MGP_CAROLIEiJ_G0021026	Synj2	96	89.921	ENSPVAG00000006131	SYNJ2	99	78.398	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021026	Synj2	100	95.312	ENSRNOG00000017114	Synj2	100	93.062	Rattus_norvegicus
MGP_CAROLIEiJ_G0021026	Synj2	100	92.587	ENSRBIG00000044126	SYNJ2	99	82.984	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021026	Synj2	100	93.030	ENSRROG00000027755	SYNJ2	99	87.011	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021026	Synj2	100	92.738	ENSSBOG00000034876	SYNJ2	99	86.844	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021026	Synj2	100	90.455	ENSSHAG00000018881	SYNJ2	99	77.831	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021026	Synj2	100	83.636	ENSSPUG00000000491	SYNJ2	95	76.678	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021026	Synj2	100	91.212	ENSSSCG00000012315	SYNJ2	99	86.525	Sus_scrofa
MGP_CAROLIEiJ_G0021026	Synj2	100	81.093	ENSTGUG00000011082	SYNJ2	100	72.342	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021026	Synj2	80	84.483	ENSTBEG00000015827	SYNJ2	84	77.477	Tupaia_belangeri
MGP_CAROLIEiJ_G0021026	Synj2	100	82.461	ENSTTRG00000009677	SYNJ2	99	77.591	Tursiops_truncatus
MGP_CAROLIEiJ_G0021026	Synj2	90	74.490	ENSUAMG00000021958	-	97	74.422	Ursus_americanus
MGP_CAROLIEiJ_G0021026	Synj2	88	86.017	ENSUAMG00000026577	-	88	86.017	Ursus_americanus
MGP_CAROLIEiJ_G0021026	Synj2	100	87.121	ENSUMAG00000012826	SYNJ2	99	83.535	Ursus_maritimus
MGP_CAROLIEiJ_G0021026	Synj2	100	88.759	ENSVVUG00000007407	SYNJ2	99	88.625	Vulpes_vulpes
MGP_CAROLIEiJ_G0021026	Synj2	100	75.378	ENSXETG00000034066	synj2	86	65.268	Xenopus_tropicalis