EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021099 (Gene tree)
Gene ID: 110312447
Gene Symbol: Chd1
Alias: 4930525N21Rik
Full Name: RIO kinase 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 1606484 bases
Position: chr17:11307191-12913674
Accession: 110283675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0042835	ResIII	PF04851.15	8.4e-08	1	1
MGP_CAROLIEiJ_P0042834	ResIII	PF04851.15	5.8e-07	1	1
MGP_CAROLIEiJ_P0042841	RIO1	PF01163.22	5.9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0042838	-	660	-	MGP_CAROLIEiJ_P0042838	163 (aa)	-	-
MGP_CAROLIEiJ_T0042835	-	4221	-	MGP_CAROLIEiJ_P0042835	1081 (aa)	-	-
MGP_CAROLIEiJ_T0042834	-	7899	-	MGP_CAROLIEiJ_P0042834	1711 (aa)	XP_021041702	UPI000A3163BE
MGP_CAROLIEiJ_T0042837	-	1814	-	MGP_CAROLIEiJ_P0042837	515 (aa)	-	-
MGP_CAROLIEiJ_T0042836	-	1370	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0042841	-	3043	-	MGP_CAROLIEiJ_P0042841	547 (aa)	XP_021004755	UPI000A31658E

Gene Model

Click here to download MGP_CAROLIEiJ_G0021099's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021099's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021099	Chd1	84	35.312	MGP_CAROLIEiJ_G0024604	Chd6	69	36.395
MGP_CAROLIEiJ_G0021099	Chd1	50	44.362	MGP_CAROLIEiJ_G0033034	Smarca1	70	43.190
MGP_CAROLIEiJ_G0021099	Chd1	95	65.552	MGP_CAROLIEiJ_G0029860	Chd2	88	60.988

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021099	Chd1	99	96.852	ENSG00000153922	CHD1	100	94.454	Homo_sapiens
MGP_CAROLIEiJ_G0021099	Chd1	73	86.918	ENSAPOG00000005764	chd1	96	83.084	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021099	Chd1	90	75.175	ENSAOCG00000023105	chd1	92	77.570	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021099	Chd1	90	76.339	ENSAPEG00000013544	chd1	92	78.786	Amphiprion_percula
MGP_CAROLIEiJ_G0021099	Chd1	90	76.814	ENSATEG00000010676	chd1	63	74.238	Anabas_testudineus
MGP_CAROLIEiJ_G0021099	Chd1	81	84.422	ENSAMXG00000010843	chd1	91	83.684	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	ENSCATG00000032035	CHD1	100	94.227	Cercocebus_atys
MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	ENSCSAG00000015339	CHD1	100	94.169	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021099	Chd1	99	94.172	ENSCANG00000036916	CHD1	100	92.182	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021099	Chd1	100	96.552	ENSCGRG00001023943	Chd1	100	96.552	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021099	Chd1	100	96.552	ENSCGRG00000008652	Chd1	100	96.552	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021099	Chd1	84	81.093	ENSCSEG00000009553	chd1	96	74.856	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021099	Chd1	97	96.970	ENSEASG00005016110	CHD1	96	94.461	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021099	Chd1	89	77.907	ENSELUG00000017677	chd1	93	77.569	Esox_lucius
MGP_CAROLIEiJ_G0021099	Chd1	82	83.597	ENSFHEG00000021164	chd1	89	80.490	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021099	Chd1	96	77.160	ENSGMOG00000001537	chd1	100	65.584	Gadus_morhua
MGP_CAROLIEiJ_G0021099	Chd1	92	88.273	ENSGALG00000031327	-	96	88.337	Gallus_gallus
MGP_CAROLIEiJ_G0021099	Chd1	91	88.418	ENSGAFG00000019880	chd1	95	82.870	Gambusia_affinis
MGP_CAROLIEiJ_G0021099	Chd1	98	96.992	ENSGGOG00000011463	CHD1	99	91.819	Gorilla_gorilla
MGP_CAROLIEiJ_G0021099	Chd1	88	78.411	ENSHCOG00000014222	chd1	91	78.782	Hippocampus_comes
MGP_CAROLIEiJ_G0021099	Chd1	87	81.447	ENSIPUG00000001369	chd1	92	81.045	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021099	Chd1	94	94.368	ENSLAFG00000023183	CHD1	99	93.178	Loxodonta_africana
MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	ENSMFAG00000031226	CHD1	100	94.169	Macaca_fascicularis
MGP_CAROLIEiJ_G0021099	Chd1	99	96.858	ENSMMUG00000014090	CHD1	99	94.444	Macaca_mulatta
MGP_CAROLIEiJ_G0021099	Chd1	99	96.861	ENSMNEG00000045073	CHD1	100	94.114	Macaca_nemestrina
MGP_CAROLIEiJ_G0021099	Chd1	96	90.942	ENSMLEG00000041096	CHD1	97	89.909	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021099	Chd1	78	86.557	ENSMZEG00005010957	chd1	89	83.151	Maylandia_zebra
MGP_CAROLIEiJ_G0021099	Chd1	72	68.380	ENSMGAG00000008369	-	100	67.008	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021099	Chd1	99	96.846	ENSMOCG00000019121	Chd1	100	93.688	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021099	Chd1	70	94.737	ENSMODG00000019266	-	100	94.474	Monodelphis_domestica
MGP_CAROLIEiJ_G0021099	Chd1	93	78.942	ENSMALG00000013317	chd1	95	77.859	Monopterus_albus
MGP_CAROLIEiJ_G0021099	Chd1	100	99.357	ENSMUSG00000023852	Chd1	100	99.357	Mus_musculus
MGP_CAROLIEiJ_G0021099	Chd1	100	99.075	MGP_PahariEiJ_G0023414	Chd1	100	99.075	Mus_pahari
MGP_CAROLIEiJ_G0021099	Chd1	87	77.273	ENSNBRG00000006860	chd1	91	77.473	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021099	Chd1	98	96.896	ENSNLEG00000014493	CHD1	99	92.686	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021099	Chd1	99	92.692	ENSOANG00000004891	CHD1	100	92.745	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021099	Chd1	94	76.772	ENSORLG00015016725	chd1	93	78.422	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021099	Chd1	100	92.326	ENSPPAG00000043367	CHD1	100	91.628	Pan_paniscus
MGP_CAROLIEiJ_G0021099	Chd1	99	96.944	ENSPTRG00000017103	CHD1	100	94.279	Pan_troglodytes
MGP_CAROLIEiJ_G0021099	Chd1	99	96.950	ENSPANG00000006387	CHD1	100	94.169	Papio_anubis
MGP_CAROLIEiJ_G0021099	Chd1	91	78.041	ENSPKIG00000024719	chd1	94	78.398	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021099	Chd1	84	83.113	ENSPMGG00000005785	chd1	93	80.738	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021099	Chd1	100	96.612	ENSPEMG00000015939	Chd1	100	96.612	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021099	Chd1	78	75.858	ENSPLAG00000006473	-	85	76.877	Poecilia_latipinna
MGP_CAROLIEiJ_G0021099	Chd1	94	77.953	ENSPREG00000004209	chd1	97	73.678	Poecilia_reticulata
MGP_CAROLIEiJ_G0021099	Chd1	99	97.959	ENSRNOG00000014434	Chd1	99	97.671	Rattus_norvegicus
MGP_CAROLIEiJ_G0021099	Chd1	99	96.858	ENSRBIG00000044325	CHD1	100	92.070	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021099	Chd1	99	96.858	ENSRROG00000001726	CHD1	100	94.169	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021099	Chd1	82	84.181	ENSSFOG00015007161	chd1	90	82.033	Scleropages_formosus
MGP_CAROLIEiJ_G0021099	Chd1	93	78.705	ENSSDUG00000018314	chd1	94	77.778	Seriola_dumerili
MGP_CAROLIEiJ_G0021099	Chd1	81	84.169	ENSSLDG00000017244	chd1	88	84.169	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021099	Chd1	93	78.325	ENSSPAG00000007024	chd1	95	78.424	Stegastes_partitus
MGP_CAROLIEiJ_G0021099	Chd1	99	96.756	ENSSSCG00000014177	CHD1	100	96.209	Sus_scrofa
MGP_CAROLIEiJ_G0021099	Chd1	99	76.111	ENSTRUG00000010282	chd1	100	72.817	Takifugu_rubripes
MGP_CAROLIEiJ_G0021099	Chd1	94	77.789	ENSTNIG00000007101	chd1	100	78.079	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021099	Chd1	94	77.953	ENSXCOG00000017184	chd1	97	71.455	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021099	Chd1	94	77.756	ENSXMAG00000014538	chd1	95	78.067	Xiphophorus_maculatus