EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021244 (Gene tree)
Gene ID: 110283864
Gene Symbol: Rpusd1
Alias: 2310051D06Rik
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 3745 bases
Position: chr17:21560499-21564243
Accession: 110283864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0043304	PseudoU_synth_2	PF00849.22	9e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0043304	-	1703	XM_021149414	MGP_CAROLIEiJ_P0043304	306 (aa)	XP_021005073	UPI000A317DE3

Gene Model

Click here to download MGP_CAROLIEiJ_G0021244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021244	Rpusd1	100	81.090	ENSG00000007376	RPUSD1	100	86.905	Homo_sapiens
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.616	ENSAPOG00000022221	rpusd1	98	57.616	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.641	ENSAMEG00000007461	RPUSD1	100	84.641	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.843	ENSACIG00000015863	rpusd1	98	57.843	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.049	ENSAOCG00000021975	rpusd1	95	57.377	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.377	ENSAPEG00000001316	rpusd1	95	57.705	Amphiprion_percula
MGP_CAROLIEiJ_G0021244	Rpusd1	83	64.427	ENSATEG00000002984	rpusd1	98	58.361	Anabas_testudineus
MGP_CAROLIEiJ_G0021244	Rpusd1	78	59.756	ENSAPLG00000012316	RPUSD1	99	59.350	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021244	Rpusd1	99	68.852	ENSACAG00000008953	RPUSD1	100	68.647	Anolis_carolinensis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSANAG00000024709	RPUSD1	100	83.333	Aotus_nancymaae
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.632	ENSACLG00000013692	rpusd1	98	57.655	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021244	Rpusd1	99	59.406	ENSAMXG00000019802	rpusd1	100	59.406	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.740	ENSBTAG00000000179	RPUSD1	100	85.714	Bos_taurus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSCJAG00000012253	RPUSD1	100	83.013	Callithrix_jacchus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	85.294	ENSCAFG00000019614	RPUSD1	100	85.621	Canis_familiaris
MGP_CAROLIEiJ_G0021244	Rpusd1	100	85.294	ENSCAFG00020008891	RPUSD1	100	85.621	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.740	ENSCHIG00000012872	RPUSD1	100	85.714	Capra_hircus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.333	ENSTSYG00000036934	RPUSD1	100	82.524	Carlito_syrichta
MGP_CAROLIEiJ_G0021244	Rpusd1	100	89.216	ENSCAPG00000014219	RPUSD1	100	89.216	Cavia_aperea
MGP_CAROLIEiJ_G0021244	Rpusd1	100	89.216	ENSCPOG00000034604	RPUSD1	100	89.216	Cavia_porcellus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSCCAG00000034385	RPUSD1	100	83.333	Cebus_capucinus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSCATG00000042983	RPUSD1	100	83.013	Cercocebus_atys
MGP_CAROLIEiJ_G0021244	Rpusd1	100	87.255	ENSCLAG00000013966	RPUSD1	100	87.255	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSCSAG00000012121	RPUSD1	100	83.013	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021244	Rpusd1	99	65.902	ENSCPBG00000021101	RPUSD1	99	65.789	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021244	Rpusd1	92	85.053	ENSCANG00000028576	RPUSD1	97	86.081	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	92.484	ENSCGRG00001014253	Rpusd1	100	92.484	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021244	Rpusd1	100	92.484	ENSCGRG00000017995	Rpusd1	100	92.484	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021244	Rpusd1	99	56.721	ENSCSEG00000018512	rpusd1	100	56.721	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.333	ENSCVAG00000022746	rpusd1	98	57.516	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021244	Rpusd1	99	63.036	ENSDARG00000060192	rpusd1	100	62.092	Danio_rerio
MGP_CAROLIEiJ_G0021244	Rpusd1	100	79.048	ENSDNOG00000003721	RPUSD1	100	78.864	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	89.216	ENSDORG00000026656	Rpusd1	100	88.889	Dipodomys_ordii
MGP_CAROLIEiJ_G0021244	Rpusd1	99	46.226	ENSEBUG00000008767	rpusd1	94	46.541	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.595	ENSEASG00005018421	RPUSD1	76	82.911	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021244	Rpusd1	83	60.630	ENSELUG00000014307	rpusd1	88	53.722	Esox_lucius
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.333	ENSFCAG00000010359	RPUSD1	100	83.007	Felis_catus
MGP_CAROLIEiJ_G0021244	Rpusd1	99	68.317	ENSFALG00000003211	RPUSD1	100	67.657	Ficedula_albicollis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	88.235	ENSFDAG00000013398	RPUSD1	100	88.235	Fukomys_damarensis
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.426	ENSFHEG00000004736	rpusd1	98	57.426	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021244	Rpusd1	83	62.451	ENSGMOG00000010756	rpusd1	98	55.263	Gadus_morhua
MGP_CAROLIEiJ_G0021244	Rpusd1	99	66.230	ENSGALG00000005315	RPUSD1	100	65.902	Gallus_gallus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	59.000	ENSGAFG00000009886	rpusd1	98	59.000	Gambusia_affinis
MGP_CAROLIEiJ_G0021244	Rpusd1	82	64.143	ENSGACG00000014276	rpusd1	97	58.086	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021244	Rpusd1	99	65.902	ENSGAGG00000004181	RPUSD1	99	65.789	Gopherus_agassizii
MGP_CAROLIEiJ_G0021244	Rpusd1	100	80.769	ENSGGOG00000013997	RPUSD1	100	81.090	Gorilla_gorilla
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.306	ENSHBUG00000023728	rpusd1	98	57.329	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021244	Rpusd1	100	87.908	ENSHGLG00000002595	RPUSD1	100	87.908	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021244	Rpusd1	100	87.908	ENSHGLG00100014303	RPUSD1	100	87.908	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.807	ENSHCOG00000002390	rpusd1	99	57.807	Hippocampus_comes
MGP_CAROLIEiJ_G0021244	Rpusd1	99	61.842	ENSIPUG00000001570	rpusd1	99	61.842	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	89.216	ENSSTOG00000004276	RPUSD1	100	89.216	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	91.503	ENSJJAG00000015696	Rpusd1	100	91.503	Jaculus_jaculus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	56.766	ENSKMAG00000017287	rpusd1	98	56.667	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.377	ENSLBEG00000022502	rpusd1	98	58.033	Labrus_bergylta
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.377	ENSLBEG00000013354	RPUSD1	98	58.033	Labrus_bergylta
MGP_CAROLIEiJ_G0021244	Rpusd1	99	62.252	ENSLACG00000008869	RPUSD1	99	62.252	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021244	Rpusd1	71	74.074	ENSLOCG00000005682	rpusd1	99	74.074	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.680	ENSLAFG00000002115	RPUSD1	100	82.680	Loxodonta_africana
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSMFAG00000003961	RPUSD1	100	83.333	Macaca_fascicularis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSMMUG00000000842	RPUSD1	100	83.333	Macaca_mulatta
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSMNEG00000042712	RPUSD1	100	83.333	Macaca_nemestrina
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSMLEG00000030591	RPUSD1	100	83.333	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021244	Rpusd1	83	64.822	ENSMAMG00000004735	rpusd1	98	58.497	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.632	ENSMZEG00005003214	rpusd1	98	57.655	Maylandia_zebra
MGP_CAROLIEiJ_G0021244	Rpusd1	98	65.781	ENSMGAG00000005447	RPUSD1	100	65.781	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021244	Rpusd1	86	86.466	ENSMAUG00000019998	Rpusd1	100	86.466	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	85.016	ENSMICG00000017561	RPUSD1	100	83.758	Microcebus_murinus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	95.098	ENSMOCG00000014082	Rpusd1	100	95.098	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021244	Rpusd1	78	67.083	ENSMMOG00000012569	rpusd1	99	58.000	Mola_mola
MGP_CAROLIEiJ_G0021244	Rpusd1	100	71.935	ENSMODG00000016882	RPUSD1	100	71.290	Monodelphis_domestica
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.516	ENSMALG00000017818	rpusd1	98	58.170	Monopterus_albus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	99.020	ENSMUSG00000041199	Rpusd1	100	99.020	Mus_musculus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	97.078	MGP_PahariEiJ_G0023562	Rpusd1	100	97.078	Mus_pahari
MGP_CAROLIEiJ_G0021244	Rpusd1	100	99.020	MGP_SPRETEiJ_G0022155	Rpusd1	100	99.020	Mus_spretus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.007	ENSMPUG00000015897	RPUSD1	100	84.314	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021244	Rpusd1	100	85.256	ENSMLUG00000001089	RPUSD1	100	85.897	Myotis_lucifugus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	92.810	ENSNGAG00000003595	Rpusd1	100	92.810	Nannospalax_galili
MGP_CAROLIEiJ_G0021244	Rpusd1	98	59.000	ENSNBRG00000006457	rpusd1	98	59.000	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021244	Rpusd1	55	77.714	ENSNLEG00000008424	-	100	77.714	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021244	Rpusd1	100	71.061	ENSMEUG00000016049	RPUSD1	100	71.569	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021244	Rpusd1	99	77.303	ENSOPRG00000008340	RPUSD1	99	77.303	Ochotona_princeps
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.967	ENSODEG00000016945	RPUSD1	100	84.967	Octodon_degus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.980	ENSONIG00000015672	rpusd1	99	57.003	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021244	Rpusd1	99	57.616	ENSORLG00000013009	rpusd1	99	57.616	Oryzias_latipes
MGP_CAROLIEiJ_G0021244	Rpusd1	99	57.285	ENSORLG00020010382	rpusd1	99	57.285	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021244	Rpusd1	99	56.623	ENSORLG00015021354	rpusd1	99	56.623	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.143	ENSOMEG00000021426	rpusd1	98	57.143	Oryzias_melastigma
MGP_CAROLIEiJ_G0021244	Rpusd1	100	87.500	ENSOGAG00000003795	RPUSD1	100	86.859	Otolemur_garnettii
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.416	ENSOARG00000014254	RPUSD1	100	85.390	Ovis_aries
MGP_CAROLIEiJ_G0021244	Rpusd1	100	80.769	ENSPPAG00000034797	RPUSD1	100	81.090	Pan_paniscus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.007	ENSPPRG00000012389	RPUSD1	100	82.201	Panthera_pardus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.007	ENSPTIG00000008545	RPUSD1	92	82.201	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021244	Rpusd1	100	80.769	ENSPTRG00000007565	RPUSD1	100	81.090	Pan_troglodytes
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.372	ENSPANG00000024401	RPUSD1	100	82.692	Papio_anubis
MGP_CAROLIEiJ_G0021244	Rpusd1	99	60.645	ENSPKIG00000018890	rpusd1	91	59.868	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021244	Rpusd1	99	67.541	ENSPSIG00000013945	RPUSD1	100	67.213	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.528	ENSPMGG00000014950	rpusd1	99	58.278	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	95.098	ENSPEMG00000000497	Rpusd1	100	95.098	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021244	Rpusd1	98	50.980	ENSPMAG00000001563	rpusd1	82	57.143	Petromyzon_marinus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	70.607	ENSPCIG00000021216	-	94	71.895	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.746	ENSPFOG00000007946	rpusd1	98	58.528	Poecilia_formosa
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.746	ENSPLAG00000011925	rpusd1	98	58.528	Poecilia_latipinna
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.416	ENSPMEG00000002910	rpusd1	98	58.194	Poecilia_mexicana
MGP_CAROLIEiJ_G0021244	Rpusd1	98	59.667	ENSPREG00000019851	rpusd1	98	59.667	Poecilia_reticulata
MGP_CAROLIEiJ_G0021244	Rpusd1	100	66.993	ENSPCAG00000002258	RPUSD1	100	66.993	Procavia_capensis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	85.897	ENSPCOG00000022582	RPUSD1	100	86.218	Propithecus_coquereli
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSPVAG00000013104	RPUSD1	100	83.013	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.306	ENSPNYG00000024076	rpusd1	98	57.525	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021244	Rpusd1	99	58.416	ENSPNAG00000013806	rpusd1	100	58.416	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021244	Rpusd1	100	97.059	ENSRNOG00000023639	Rpusd1	100	97.059	Rattus_norvegicus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSRBIG00000030238	RPUSD1	100	83.013	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021244	Rpusd1	100	82.692	ENSRROG00000036663	RPUSD1	100	83.013	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.007	ENSSBOG00000033063	RPUSD1	100	83.660	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	69.649	ENSSHAG00000013500	RPUSD1	100	70.915	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021244	Rpusd1	99	61.921	ENSSFOG00015014394	rpusd1	99	61.921	Scleropages_formosus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.705	ENSSMAG00000008045	rpusd1	91	58.361	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021244	Rpusd1	83	66.008	ENSSDUG00000001829	rpusd1	95	59.672	Seriola_dumerili
MGP_CAROLIEiJ_G0021244	Rpusd1	83	66.008	ENSSLDG00000020853	rpusd1	95	59.672	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021244	Rpusd1	55	87.425	ENSSARG00000011187	-	100	87.425	Sorex_araneus
MGP_CAROLIEiJ_G0021244	Rpusd1	63	55.612	ENSSPUG00000005119	-	100	56.186	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.361	ENSSPAG00000012708	rpusd1	98	59.016	Stegastes_partitus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	ENSSSCG00000008000	RPUSD1	98	87.008	Sus_scrofa
MGP_CAROLIEiJ_G0021244	Rpusd1	83	75.294	ENSTGUG00000015375	RPUSD1	100	75.294	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021244	Rpusd1	98	57.516	ENSTRUG00000003041	rpusd1	98	57.516	Takifugu_rubripes
MGP_CAROLIEiJ_G0021244	Rpusd1	98	54.667	ENSTNIG00000002660	rpusd1	99	54.667	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.936	ENSTTRG00000010167	RPUSD1	100	83.974	Tursiops_truncatus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.641	ENSUAMG00000012736	RPUSD1	100	84.967	Ursus_americanus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.641	ENSUMAG00000021174	RPUSD1	100	84.967	Ursus_maritimus
MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.365	ENSVVUG00000012357	RPUSD1	100	84.314	Vulpes_vulpes
MGP_CAROLIEiJ_G0021244	Rpusd1	100	61.111	ENSXETG00000007184	rpusd1	100	60.510	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.333	ENSXCOG00000017930	rpusd1	98	58.333	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.667	ENSXMAG00000024084	rpusd1	98	58.667	Xiphophorus_maculatus