EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021308 (Gene tree)
Gene ID: 110283856
Gene Symbol: Snrpc
Alias: Snrp1c|U1-C
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 10781 bases
Position: chr17:23690507-23701287
Accession: 110283856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0043573	zf-U1	PF06220.12	1.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0043574	-	4961	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0043573	-	870	-	MGP_CAROLIEiJ_P0043573	159 (aa)	XP_021005065	UPI00000018C0

Gene Model

Click here to download MGP_CAROLIEiJ_G0021308's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021308's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSG00000124562	SNRPC	100	99.371	Homo_sapiens
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSAMEG00000000963	SNRPC	88	97.484	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021308	Snrpc	99	96.178	ENSACAG00000015721	SNRPC	87	96.178	Anolis_carolinensis
MGP_CAROLIEiJ_G0021308	Snrpc	100	94.969	ENSANAG00000019157	-	100	94.969	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	75.472	ENSANAG00000021444	-	61	82.292	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	99	91.139	ENSANAG00000020588	-	92	91.139	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	88.679	ENSANAG00000019726	-	92	89.308	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSANAG00000019696	-	100	99.371	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	86.792	ENSANAG00000021026	-	100	79.874	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSANAG00000007843	-	100	98.742	Aotus_nancymaae
MGP_CAROLIEiJ_G0021308	Snrpc	100	84.277	ENSAMXG00000032641	snrpc	87	84.277	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSBTAG00000024549	SNRPC	100	99.371	Bos_taurus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCJAG00000015321	-	100	99.371	Callithrix_jacchus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSCJAG00000043055	-	100	98.113	Callithrix_jacchus
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.855	ENSCJAG00000041822	-	100	96.855	Callithrix_jacchus
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.875	ENSCAFG00000028988	-	100	96.875	Canis_familiaris
MGP_CAROLIEiJ_G0021308	Snrpc	74	99.153	ENSCAFG00000001231	-	93	99.153	Canis_familiaris
MGP_CAROLIEiJ_G0021308	Snrpc	100	94.969	ENSCAFG00000031775	-	100	94.969	Canis_familiaris
MGP_CAROLIEiJ_G0021308	Snrpc	100	77.987	ENSCAFG00000025525	-	100	77.987	Canis_familiaris
MGP_CAROLIEiJ_G0021308	Snrpc	100	94.969	ENSCAFG00020017383	-	100	94.969	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021308	Snrpc	99	87.898	ENSCAFG00020009944	-	90	87.898	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021308	Snrpc	100	78.090	ENSCAFG00020026577	-	100	84.270	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCAFG00020005945	-	100	99.371	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021308	Snrpc	100	95.597	ENSCAFG00020005758	-	99	96.178	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSCHIG00000012087	-	100	98.742	Capra_hircus
MGP_CAROLIEiJ_G0021308	Snrpc	99	88.608	ENSTSYG00000029745	-	62	93.496	Carlito_syrichta
MGP_CAROLIEiJ_G0021308	Snrpc	100	82.390	ENSTSYG00000025721	-	100	76.101	Carlito_syrichta
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSTSYG00000011216	-	100	99.371	Carlito_syrichta
MGP_CAROLIEiJ_G0021308	Snrpc	89	99.296	ENSCAPG00000005161	SNRPC	100	99.296	Cavia_aperea
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCPOG00000008563	SNRPC	100	99.371	Cavia_porcellus
MGP_CAROLIEiJ_G0021308	Snrpc	98	79.487	ENSCCAG00000022209	-	95	79.487	Cebus_capucinus
MGP_CAROLIEiJ_G0021308	Snrpc	98	91.026	ENSCCAG00000022751	-	95	91.026	Cebus_capucinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	93.711	ENSCCAG00000036059	-	89	93.711	Cebus_capucinus
MGP_CAROLIEiJ_G0021308	Snrpc	99	80.892	ENSCCAG00000026624	-	66	75.796	Cebus_capucinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCATG00000035787	SNRPC	100	99.371	Cercocebus_atys
MGP_CAROLIEiJ_G0021308	Snrpc	99	80.892	ENSCLAG00000010242	-	96	80.892	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCLAG00000016920	SNRPC	100	99.371	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021308	Snrpc	100	78.652	ENSCSAG00000009821	SNRPC	100	84.831	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021308	Snrpc	100	81.132	ENSCHOG00000011439	SNRPC	88	82.166	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.855	ENSCPBG00000027142	SNRPC	100	96.855	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021308	Snrpc	75	57.724	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSCANG00000028035	SNRPC	100	99.371	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSCGRG00001009011	-	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021308	Snrpc	100	88.050	ENSCGRG00001021483	-	100	81.761	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021308	Snrpc	99	99.363	ENSCGRG00000005005	Snrpc	99	99.363	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021308	Snrpc	75	98.319	ENSDNOG00000042403	-	94	98.319	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSDNOG00000034699	-	99	98.113	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021308	Snrpc	100	80.503	ENSDORG00000005955	Snrpc	66	79.618	Dipodomys_ordii
MGP_CAROLIEiJ_G0021308	Snrpc	52	93.976	ENSETEG00000008756	-	61	93.548	Echinops_telfairi
MGP_CAROLIEiJ_G0021308	Snrpc	98	91.667	ENSETEG00000011265	-	100	91.667	Echinops_telfairi
MGP_CAROLIEiJ_G0021308	Snrpc	98	95.513	ENSETEG00000008268	-	100	95.513	Echinops_telfairi
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSEASG00005021007	SNRPC	100	99.371	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSECAG00000026848	SNRPC	100	99.371	Equus_caballus
MGP_CAROLIEiJ_G0021308	Snrpc	99	79.747	ENSEEUG00000014633	SNRPC	90	79.747	Erinaceus_europaeus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSFCAG00000044077	-	100	99.371	Felis_catus
MGP_CAROLIEiJ_G0021308	Snrpc	100	92.453	ENSFCAG00000031775	-	88	92.453	Felis_catus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSFALG00000003756	SNRPC	100	98.113	Ficedula_albicollis
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSFDAG00000018111	SNRPC	100	99.371	Fukomys_damarensis
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.250	ENSGALG00000002773	SNRPC	100	96.250	Gallus_gallus
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.855	ENSGAGG00000003063	SNRPC	100	96.855	Gopherus_agassizii
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSGGOG00000012499	SNRPC	100	99.371	Gorilla_gorilla
MGP_CAROLIEiJ_G0021308	Snrpc	100	80.503	ENSHGLG00000017741	-	100	77.987	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSHGLG00000013981	SNRPC	100	99.371	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021308	Snrpc	81	74.419	ENSHGLG00000005871	-	100	74.843	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021308	Snrpc	100	94.969	ENSHGLG00100017764	-	100	94.969	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021308	Snrpc	100	80.503	ENSHGLG00100010786	-	100	77.987	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSHGLG00100009478	SNRPC	100	99.371	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021308	Snrpc	100	84.906	ENSIPUG00000024851	snrpc	100	84.906	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSSTOG00000013786	SNRPC	100	99.371	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSJJAG00000021741	Snrpc	100	100.000	Jaculus_jaculus
MGP_CAROLIEiJ_G0021308	Snrpc	100	88.125	ENSLACG00000013753	SNRPC	88	91.139	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSLAFG00000013534	SNRPC	100	99.371	Loxodonta_africana
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSMFAG00000030525	-	100	98.742	Macaca_fascicularis
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSMFAG00000031764	-	100	99.371	Macaca_fascicularis
MGP_CAROLIEiJ_G0021308	Snrpc	100	90.566	ENSMMUG00000045425	-	100	90.566	Macaca_mulatta
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSMMUG00000000869	-	97	98.113	Macaca_mulatta
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSMMUG00000039415	-	100	98.113	Macaca_mulatta
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSMNEG00000032731	SNRPC	100	99.371	Macaca_nemestrina
MGP_CAROLIEiJ_G0021308	Snrpc	97	91.613	ENSMLEG00000040224	-	89	91.613	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSMLEG00000033916	-	100	99.371	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.226	ENSMGAG00000006054	SNRPC	100	96.226	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSMICG00000007339	-	100	98.742	Microcebus_murinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSMICG00000032183	-	100	98.742	Microcebus_murinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	84.277	ENSMICG00000036552	-	87	79.487	Microcebus_murinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	87.421	ENSMICG00000009130	-	100	88.050	Microcebus_murinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSMOCG00000017609	Snrpc	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSMODG00000013904	-	100	98.113	Monodelphis_domestica
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSMUSG00000024217	Snrpc	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0021308	Snrpc	74	100.000	MGP_SPRETEiJ_G0022221	-	98	100.000	Mus_spretus
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSMPUG00000003210	SNRPC	100	97.484	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSMLUG00000002488	SNRPC	100	97.484	Myotis_lucifugus
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSNGAG00000019686	Snrpc	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSNLEG00000034810	SNRPC	100	99.371	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021308	Snrpc	89	98.592	ENSMEUG00000009300	SNRPC	100	98.592	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSODEG00000019633	-	100	98.113	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSODEG00000020201	-	100	98.742	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSODEG00000018985	-	100	99.371	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSODEG00000017080	-	100	99.371	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSODEG00000020370	-	100	99.371	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	77	93.496	ENSODEG00000006008	-	88	93.496	Octodon_degus
MGP_CAROLIEiJ_G0021308	Snrpc	91	94.595	ENSOANG00000003405	SNRPC	100	94.595	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSOCUG00000026430	-	99	98.113	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSOCUG00000026668	-	100	99.371	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.855	ENSOCUG00000023292	-	100	96.855	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSOGAG00000026269	-	100	97.484	Otolemur_garnettii
MGP_CAROLIEiJ_G0021308	Snrpc	97	83.766	ENSOGAG00000028405	-	99	79.221	Otolemur_garnettii
MGP_CAROLIEiJ_G0021308	Snrpc	99	98.726	ENSOGAG00000008755	-	88	98.726	Otolemur_garnettii
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSOARG00000010823	SNRPC	100	99.371	Ovis_aries
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPPAG00000043871	SNRPC	100	99.371	Pan_paniscus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPPRG00000008647	-	100	99.371	Panthera_pardus
MGP_CAROLIEiJ_G0021308	Snrpc	96	60.390	ENSPPRG00000016017	-	86	54.902	Panthera_pardus
MGP_CAROLIEiJ_G0021308	Snrpc	97	63.226	ENSPTIG00000013329	-	62	81.053	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPTIG00000021867	-	100	99.371	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPTRG00000018070	SNRPC	100	99.371	Pan_troglodytes
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPANG00000022802	-	100	99.371	Papio_anubis
MGP_CAROLIEiJ_G0021308	Snrpc	100	89.308	ENSPANG00000018228	-	94	89.308	Papio_anubis
MGP_CAROLIEiJ_G0021308	Snrpc	99	95.541	ENSPSIG00000004876	SNRPC	77	95.541	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSPEMG00000010773	Snrpc	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021308	Snrpc	100	88.050	ENSPEMG00000002763	-	100	85.535	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021308	Snrpc	52	98.795	ENSPPYG00000029902	-	84	98.795	Pongo_abelii
MGP_CAROLIEiJ_G0021308	Snrpc	99	98.726	ENSPCAG00000016885	SNRPC	90	98.726	Procavia_capensis
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSPCOG00000004904	SNRPC	100	99.371	Propithecus_coquereli
MGP_CAROLIEiJ_G0021308	Snrpc	99	98.089	ENSPVAG00000015597	SNRPC	87	98.089	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	ENSRNOG00000000493	Snrpc	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSRBIG00000037567	-	100	99.371	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021308	Snrpc	100	89.937	ENSRBIG00000036353	-	83	89.937	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSRBIG00000022998	-	100	98.742	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.742	ENSRBIG00000014819	-	100	98.742	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSRROG00000041300	SNRPC	100	99.371	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSSBOG00000031528	-	100	99.371	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021308	Snrpc	98	80.769	ENSSBOG00000032882	-	93	80.769	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021308	Snrpc	98	82.051	ENSSBOG00000023189	-	91	82.051	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021308	Snrpc	95	82.119	ENSSBOG00000032361	-	66	80.208	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021308	Snrpc	99	98.089	ENSSHAG00000000945	-	87	98.089	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021308	Snrpc	100	75.472	ENSSARG00000008970	SNRPC	89	75.472	Sorex_araneus
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSSPUG00000002502	SNRPC	100	97.484	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	ENSSSCG00000001531	SNRPC	100	99.371	Sus_scrofa
MGP_CAROLIEiJ_G0021308	Snrpc	100	96.855	ENSTGUG00000001773	SNRPC	100	96.855	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021308	Snrpc	89	72.535	ENSTBEG00000016759	-	79	72.535	Tupaia_belangeri
MGP_CAROLIEiJ_G0021308	Snrpc	98	91.667	ENSTBEG00000013022	-	100	91.667	Tupaia_belangeri
MGP_CAROLIEiJ_G0021308	Snrpc	100	97.484	ENSTTRG00000007827	SNRPC	87	97.484	Tursiops_truncatus
MGP_CAROLIEiJ_G0021308	Snrpc	75	98.319	ENSUAMG00000014125	SNRPC	80	98.319	Ursus_americanus
MGP_CAROLIEiJ_G0021308	Snrpc	100	88.764	ENSUMAG00000010869	SNRPC	100	88.764	Ursus_maritimus
MGP_CAROLIEiJ_G0021308	Snrpc	89	73.944	ENSVPAG00000003106	SNRPC	79	73.944	Vicugna_pacos
MGP_CAROLIEiJ_G0021308	Snrpc	100	98.113	ENSVVUG00000021947	-	100	98.113	Vulpes_vulpes
MGP_CAROLIEiJ_G0021308	Snrpc	97	94.156	ENSVVUG00000010467	-	87	94.231	Vulpes_vulpes
MGP_CAROLIEiJ_G0021308	Snrpc	100	89.308	ENSXETG00000024721	snrpc	100	89.308	Xenopus_tropicalis