EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021415 (Gene tree)
Gene ID: 110312523
Gene Symbol: Rab11b
Alias: A730055L17Rik
Full Name: RAB11B%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 13200 bases
Position: chr17:30033127-30046326
Accession: 110312523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0044022	MMR_HSR1	PF01926.23	3.4e-07	1	1
MGP_CAROLIEiJ_P0044024	MMR_HSR1	PF01926.23	4.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0044024	-	657	-	MGP_CAROLIEiJ_P0044024	218 (aa)	XP_021041843	UPI000006CF2D
MGP_CAROLIEiJ_T0044025	-	504	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044021	-	1524	-	MGP_CAROLIEiJ_P0044021	193 (aa)	-	-
MGP_CAROLIEiJ_T0044022	-	1261	-	MGP_CAROLIEiJ_P0044022	182 (aa)	-	-
MGP_CAROLIEiJ_T0044023	-	889	-	MGP_CAROLIEiJ_P0044023	149 (aa)	-	UPI00001EB961

Gene Model

Click here to download MGP_CAROLIEiJ_G0021415's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021415's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021415	Rab11b	94	33.175	MGP_CAROLIEiJ_G0015435	Rab36	79	33.175
MGP_CAROLIEiJ_G0021415	Rab11b	89	34.586	MGP_CAROLIEiJ_G0027024	Rheb	89	34.146
MGP_CAROLIEiJ_G0021415	Rab11b	82	36.000	MGP_CAROLIEiJ_G0025445	Nras	95	37.241
MGP_CAROLIEiJ_G0021415	Rab11b	77	32.203	MGP_CAROLIEiJ_G0017227	Arl4d	57	32.203
MGP_CAROLIEiJ_G0021415	Rab11b	91	37.778	MGP_CAROLIEiJ_G0030051	Rab6a	75	38.217
MGP_CAROLIEiJ_G0021415	Rab11b	80	31.746	MGP_CAROLIEiJ_G0017715	Arl4a	60	31.746
MGP_CAROLIEiJ_G0021415	Rab11b	86	36.943	MGP_CAROLIEiJ_G0020176	Rabl2	68	36.943
MGP_CAROLIEiJ_G0021415	Rab11b	96	54.286	MGP_CAROLIEiJ_G0025796	Rab2a	83	54.286
MGP_CAROLIEiJ_G0021415	Rab11b	95	55.634	MGP_CAROLIEiJ_G0022536	Rab1b	99	48.095
MGP_CAROLIEiJ_G0021415	Rab11b	77	30.986	MGP_CAROLIEiJ_G0014632	Arl8a	72	30.986
MGP_CAROLIEiJ_G0021415	Rab11b	90	43.382	MGP_CAROLIEiJ_G0024976	Rab33b	76	40.462
MGP_CAROLIEiJ_G0021415	Rab11b	82	35.333	MGP_CAROLIEiJ_G0030681	Hras	94	35.519
MGP_CAROLIEiJ_G0021415	Rab11b	97	71.034	MGP_CAROLIEiJ_G0025171	Rab25	100	60.987
MGP_CAROLIEiJ_G0021415	Rab11b	94	38.095	MGP_CAROLIEiJ_G0033573	Rab9	97	38.095
MGP_CAROLIEiJ_G0021415	Rab11b	94	49.286	MGP_CAROLIEiJ_G0027632	Rab35	99	42.105
MGP_CAROLIEiJ_G0021415	Rab11b	89	48.120	MGP_CAROLIEiJ_G0021741	Rab5a	86	49.045
MGP_CAROLIEiJ_G0021415	Rab11b	97	53.793	MGP_CAROLIEiJ_G0023477	-	97	53.741
MGP_CAROLIEiJ_G0021415	Rab11b	92	41.916	MGP_CAROLIEiJ_G0021830	Rab31	85	41.916
MGP_CAROLIEiJ_G0021415	Rab11b	93	43.885	MGP_CAROLIEiJ_G0021839	Rab12	70	37.264
MGP_CAROLIEiJ_G0021415	Rab11b	91	44.118	MGP_CAROLIEiJ_G0017386	Rab37	77	44.578
MGP_CAROLIEiJ_G0021415	Rab11b	93	56.522	MGP_CAROLIEiJ_G0019238	Rab2b	99	48.387
MGP_CAROLIEiJ_G0021415	Rab11b	84	36.538	MGP_CAROLIEiJ_G0016794	Rab34	60	36.538
MGP_CAROLIEiJ_G0021415	Rab11b	89	49.624	MGP_CAROLIEiJ_G0017184	Rab5c	90	42.029
MGP_CAROLIEiJ_G0021415	Rab11b	89	42.336	MGP_CAROLIEiJ_G0033427	Rab9b	86	41.040
MGP_CAROLIEiJ_G0021415	Rab11b	95	45.930	MGP_CAROLIEiJ_G0025227	Rab13	85	45.930
MGP_CAROLIEiJ_G0021415	Rab11b	97	35.417	MGP_CAROLIEiJ_G0014015	Rab23	80	33.508
MGP_CAROLIEiJ_G0021415	Rab11b	97	100.000	MGP_CAROLIEiJ_G0032346	Rab11a	100	96.078
MGP_CAROLIEiJ_G0021415	Rab11b	93	46.763	MGP_CAROLIEiJ_G0017873	Rab15	82	44.000
MGP_CAROLIEiJ_G0021415	Rab11b	82	35.333	MGP_CAROLIEiJ_G0029047	Kras	93	34.066
MGP_CAROLIEiJ_G0021415	Rab11b	82	32.450	MGP_CAROLIEiJ_G0032562	Mras	81	34.118
MGP_CAROLIEiJ_G0021415	Rab11b	90	41.912	MGP_CAROLIEiJ_G0033044	Rab33a	85	37.255
MGP_CAROLIEiJ_G0021415	Rab11b	98	53.425	MGP_CAROLIEiJ_G0016115	Rab1a	100	45.581
MGP_CAROLIEiJ_G0021415	Rab11b	95	47.887	MGP_CAROLIEiJ_G0021978	Rab18	85	44.693
MGP_CAROLIEiJ_G0021415	Rab11b	93	44.604	MGP_CAROLIEiJ_G0029992	Rab30	97	40.000
MGP_CAROLIEiJ_G0021415	Rab11b	93	30.667	MGP_CAROLIEiJ_G0028030	Rasl11a	62	30.667
MGP_CAROLIEiJ_G0021415	Rab11b	91	42.963	MGP_CAROLIEiJ_G0024752	Rab22a	83	42.236
MGP_CAROLIEiJ_G0021415	Rab11b	91	36.296	MGP_CAROLIEiJ_G0032585	Rab6b	77	35.404

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSG00000185236	RAB11B	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0021415	Rab11b	99	98.630	ENSAMEG00000004955	RAB11B	99	98.630	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021415	Rab11b	99	95.946	ENSACIG00000024374	rab11ba	70	97.059	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021415	Rab11b	97	98.621	ENSAOCG00000018050	rab11ba	100	94.495	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.931	ENSAPEG00000009177	rab11ba	100	94.037	Amphiprion_percula
MGP_CAROLIEiJ_G0021415	Rab11b	53	97.468	ENSAPEG00000009227	-	89	97.468	Amphiprion_percula
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSATEG00000023730	rab11ba	100	95.413	Anabas_testudineus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSANAG00000037616	RAB11B	100	100.000	Aotus_nancymaae
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.241	ENSACLG00000005420	rab11ba	100	93.119	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021415	Rab11b	97	89.655	ENSACLG00000018852	-	92	87.685	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021415	Rab11b	97	93.103	WBGene00004274	rab-11.1	99	80.556	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCJAG00000010778	RAB11B	100	100.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCAFG00000032060	RAB11B	100	100.000	Canis_familiaris
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCAFG00020022184	RAB11B	100	100.000	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSTSYG00000014758	RAB11B	100	100.000	Carlito_syrichta
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSCPOG00000030154	RAB11B	100	99.541	Cavia_porcellus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCCAG00000031042	RAB11B	100	100.000	Cebus_capucinus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCLAG00000003207	RAB11B	100	100.000	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCSAG00000008024	RAB11B	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021415	Rab11b	100	85.780	ENSCHOG00000013525	RAB11B	100	85.780	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021415	Rab11b	97	95.862	ENSCING00000009526	-	100	84.475	Ciona_intestinalis
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCANG00000040517	RAB11B	100	100.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCGRG00001013827	Rab11b	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSCGRG00000010967	Rab11b	100	100.000	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSCSEG00000007121	rab11ba	84	94.495	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021415	Rab11b	100	96.330	ENSDARG00000041878	rab11ba	100	96.330	Danio_rerio
MGP_CAROLIEiJ_G0021415	Rab11b	100	98.165	ENSDNOG00000004134	-	100	98.165	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSDNOG00000014618	RAB11B	97	100.000	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.083	ENSDORG00000006304	Rab11b	100	99.083	Dipodomys_ordii
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.931	ENSEBUG00000011775	rab11ba	99	94.146	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021415	Rab11b	97	89.655	ENSEBUG00000015447	-	100	81.651	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021415	Rab11b	96	100.000	ENSEEUG00000009165	-	100	100.000	Erinaceus_europaeus
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.279	ENSELUG00000019240	-	99	92.784	Esox_lucius
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSFCAG00000015216	RAB11B	100	99.541	Felis_catus
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSFDAG00000019872	RAB11B	100	99.541	Fukomys_damarensis
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSFHEG00000022642	rab11ba	100	94.037	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021415	Rab11b	99	93.919	ENSGMOG00000007390	rab11ba	99	92.661	Gadus_morhua
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSGAFG00000005679	rab11ba	100	94.495	Gambusia_affinis
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.083	ENSGAGG00000012557	-	100	99.083	Gopherus_agassizii
MGP_CAROLIEiJ_G0021415	Rab11b	53	89.873	ENSHBUG00000019290	-	95	89.873	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSHGLG00000014984	RAB11B	100	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSHGLG00100003638	RAB11B	100	99.541	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSSTOG00000031571	RAB11B	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSJJAG00000018891	Rab11b	100	100.000	Jaculus_jaculus
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSKMAG00000006082	-	100	94.954	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSLBEG00000006087	rab11ba	100	94.954	Labrus_bergylta
MGP_CAROLIEiJ_G0021415	Rab11b	97	98.621	ENSLACG00000016974	RAB11B	99	99.412	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSLAFG00000013598	RAB11B	100	100.000	Loxodonta_africana
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSMNEG00000039759	-	100	100.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0021415	Rab11b	99	95.946	ENSMAMG00000018556	rab11ba	100	94.495	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021415	Rab11b	97	89.655	ENSMZEG00005019251	-	92	87.685	Maylandia_zebra
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.241	ENSMZEG00005010947	rab11ba	100	93.119	Maylandia_zebra
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSMAUG00000021579	Rab11b	100	99.541	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSMOCG00000012667	Rab11b	100	99.541	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021415	Rab11b	99	94.595	ENSMALG00000021949	rab11ba	100	92.202	Monopterus_albus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSMUSG00000077450	Rab11b	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	MGP_PahariEiJ_G0020420	Rab11b	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	MGP_SPRETEiJ_G0022327	Rab11b	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0021415	Rab11b	100	99.541	ENSMPUG00000007263	RAB11B	100	99.541	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021415	Rab11b	100	95.475	ENSMLUG00000002308	-	100	95.475	Myotis_lucifugus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSNGAG00000015757	Rab11b	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0021415	Rab11b	99	95.946	ENSNBRG00000023898	rab11ba	84	93.578	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSNLEG00000001733	RAB11B	100	100.000	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSODEG00000011371	RAB11B	100	100.000	Octodon_degus
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSONIG00000002535	rab11ba	100	94.037	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021415	Rab11b	89	99.242	ENSOCUG00000028208	RAB11B	64	98.137	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.973	ENSORLG00000015307	rab11ba	99	95.853	Oryzias_latipes
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.973	ENSORLG00020020816	rab11ba	99	95.853	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.973	ENSORLG00015016946	rab11ba	81	96.296	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.973	ENSOMEG00000002581	rab11ba	99	95.853	Oryzias_melastigma
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSOGAG00000003227	RAB11B	99	100.000	Otolemur_garnettii
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSOARG00000003801	RAB11B	97	100.000	Ovis_aries
MGP_CAROLIEiJ_G0021415	Rab11b	97	99.310	ENSPPRG00000010160	RAB11B	89	95.028	Panthera_pardus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSPEMG00000014536	Rab11b	100	100.000	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021415	Rab11b	89	96.970	ENSPMAG00000009335	-	100	80.952	Petromyzon_marinus
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSPFOG00000006159	rab11ba	100	94.954	Poecilia_formosa
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSPLAG00000014243	rab11ba	100	94.954	Poecilia_latipinna
MGP_CAROLIEiJ_G0021415	Rab11b	53	98.734	ENSPLAG00000014507	-	100	98.734	Poecilia_latipinna
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSPMEG00000007917	rab11ba	75	94.954	Poecilia_mexicana
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSPREG00000006357	rab11ba	78	94.954	Poecilia_reticulata
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSPPYG00000009504	RAB11B	100	100.000	Pongo_abelii
MGP_CAROLIEiJ_G0021415	Rab11b	100	91.284	ENSPCAG00000016118	RAB11B	100	91.284	Procavia_capensis
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSPCOG00000028053	RAB11B	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.241	ENSPCOG00000008655	-	100	97.945	Propithecus_coquereli
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSPVAG00000009645	RAB11B	100	100.000	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021415	Rab11b	97	85.034	ENSPNYG00000023810	-	90	78.537	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021415	Rab11b	97	97.241	ENSPNYG00000019644	rab11ba	100	93.119	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021415	Rab11b	100	97.248	ENSPNAG00000020475	rab11ba	100	97.248	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021415	Rab11b	100	97.706	ENSPNAG00000006431	-	100	97.706	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSRNOG00000007648	Rab11b	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSSBOG00000035094	RAB11B	100	100.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSSDUG00000002965	rab11ba	100	94.954	Seriola_dumerili
MGP_CAROLIEiJ_G0021415	Rab11b	99	97.297	ENSSLDG00000005221	rab11ba	100	94.954	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSSPAG00000017313	rab11ba	100	94.037	Stegastes_partitus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSSSCG00000013600	RAB11B	100	100.000	Sus_scrofa
MGP_CAROLIEiJ_G0021415	Rab11b	87	100.000	ENSTBEG00000014750	-	100	100.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSTTRG00000009758	RAB11B	100	100.000	Tursiops_truncatus
MGP_CAROLIEiJ_G0021415	Rab11b	87	100.000	ENSUMAG00000014594	RAB11B	97	80.488	Ursus_maritimus
MGP_CAROLIEiJ_G0021415	Rab11b	100	100.000	ENSVVUG00000025210	RAB11B	100	100.000	Vulpes_vulpes
MGP_CAROLIEiJ_G0021415	Rab11b	97	98.621	ENSXETG00000021890	rab11b.2	99	95.413	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021415	Rab11b	89	97.744	ENSXCOG00000009194	-	98	97.744	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	ENSXMAG00000013416	rab11ba	100	94.495	Xiphophorus_maculatus