EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021477 (Gene tree)
Gene ID: 110312412
Gene Symbol: Skiv2l
Alias: 4930534J06Rik|Ski2w
Full Name: Ski2 like RNA helicase
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 10878 bases
Position: chr17:31573996-31584873
Accession: 110312412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0044306	rRNA_proc-arch	PF13234.6	6.8e-42	1	1
MGP_CAROLIEiJ_P0044310	rRNA_proc-arch	PF13234.6	7.7e-18	1	2
MGP_CAROLIEiJ_P0044310	rRNA_proc-arch	PF13234.6	7.7e-18	2	2
MGP_CAROLIEiJ_P0044306	DEAD	PF00270.29	1.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0044314	-	457	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044315	-	881	-	MGP_CAROLIEiJ_P0044315	92 (aa)	-	-
MGP_CAROLIEiJ_T0044312	-	927	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044313	-	832	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044310	-	727	-	MGP_CAROLIEiJ_P0044310	242 (aa)	-	-
MGP_CAROLIEiJ_T0044311	-	817	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044305	-	4111	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044307	-	3988	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044306	-	3977	XM_021185982	MGP_CAROLIEiJ_P0044306	1244 (aa)	XP_021041641	UPI000A3163FD
MGP_CAROLIEiJ_T0044309	-	462	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044308	-	4517	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021477's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021477's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021477	Skiv2l	76	37.318	MGP_CAROLIEiJ_G0018896	Mtrex	88	37.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSG00000204351	SKIV2L	98	96.067	Homo_sapiens
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.319	ENSAPOG00000008257	skiv2l	99	61.805	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.943	ENSAMEG00000002078	SKIV2L	100	92.943	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.225	ENSACIG00000016719	skiv2l	99	60.533	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.319	ENSAOCG00000017352	skiv2l	99	61.594	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.239	ENSAPEG00000001055	skiv2l	99	61.514	Amphiprion_percula
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.908	ENSATEG00000007601	skiv2l	99	61.040	Anabas_testudineus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	65.909	ENSACAG00000011746	SKIV2L	98	66.188	Anolis_carolinensis
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.504	ENSANAG00000037992	SKIV2L	100	93.504	Aotus_nancymaae
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.606	ENSACLG00000006886	skiv2l	99	62.127	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021477	Skiv2l	98	59.711	ENSAMXG00000011517	skiv2l	99	59.631	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.424	ENSBTAG00000005587	SKIV2L	100	93.424	Bos_taurus
MGP_CAROLIEiJ_G0021477	Skiv2l	95	39.280	WBGene00008502	skih-2	99	39.358	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSCJAG00000002263	SKIV2L	100	93.184	Callithrix_jacchus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.702	ENSCAFG00000000679	SKIV2L	100	92.702	Canis_familiaris
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.622	ENSCAFG00020000948	SKIV2L	100	92.622	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.424	ENSCHIG00000012897	SKIV2L	100	93.424	Capra_hircus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.863	ENSTSYG00000012133	SKIV2L	100	92.863	Carlito_syrichta
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.042	ENSCPOG00000001307	SKIV2L	100	92.042	Cavia_porcellus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.344	ENSCCAG00000026206	SKIV2L	100	93.344	Cebus_capucinus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSCATG00000036901	SKIV2L	100	93.184	Cercocebus_atys
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.542	ENSCLAG00000007678	SKIV2L	100	92.542	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSCSAG00000008988	SKIV2L	100	93.184	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021477	Skiv2l	87	64.327	ENSCPBG00000000343	SKIV2L	96	65.506	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021477	Skiv2l	94	50.719	ENSCING00000005576	-	99	50.634	Ciona_intestinalis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	93.339	ENSCANG00000039709	SKIV2L	100	93.339	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	95.418	ENSCGRG00001008385	Skiv2l	100	95.418	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.960	ENSCSEG00000011326	skiv2l	98	61.277	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.164	ENSCVAG00000003072	skiv2l	99	61.267	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.315	ENSDARG00000062206	skiv2l	99	60.671	Danio_rerio
MGP_CAROLIEiJ_G0021477	Skiv2l	94	92.949	ENSDNOG00000037590	SKIV2L	100	85.771	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021477	Skiv2l	93	44.360	FBgn0039117	tst	97	44.595	Drosophila_melanogaster
MGP_CAROLIEiJ_G0021477	Skiv2l	100	76.534	ENSETEG00000009522	SKIV2L	69	92.683	Echinops_telfairi
MGP_CAROLIEiJ_G0021477	Skiv2l	89	56.571	ENSEBUG00000013680	-	97	56.506	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021477	Skiv2l	93	94.062	ENSEASG00005015534	SKIV2L	99	94.062	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021477	Skiv2l	95	92.947	ENSECAG00000021823	SKIV2L	96	92.947	Equus_caballus
MGP_CAROLIEiJ_G0021477	Skiv2l	93	74.131	ENSEEUG00000005049	SKIV2L	57	97.628	Erinaceus_europaeus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	59.605	ENSELUG00000000181	skiv2l	94	65.909	Esox_lucius
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSFCAG00000004519	SKIV2L	100	93.184	Felis_catus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	89.976	ENSFDAG00000009438	SKIV2L	100	90.297	Fukomys_damarensis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.301	ENSFHEG00000008853	skiv2l	99	61.576	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	58.899	ENSGMOG00000005926	skiv2l	98	58.995	Gadus_morhua
MGP_CAROLIEiJ_G0021477	Skiv2l	100	39.928	ENSGALG00000035499	SKIV2L	99	60.772	Gallus_gallus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.490	ENSGAFG00000002382	skiv2l	99	61.767	Gambusia_affinis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.159	ENSGACG00000002927	skiv2l	98	60.677	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.943	ENSGGOG00000002270	SKIV2L	100	92.943	Gorilla_gorilla
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.526	ENSHBUG00000000726	skiv2l	99	62.047	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021477	Skiv2l	100	91.193	ENSHGLG00000016596	SKIV2L	100	91.433	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021477	Skiv2l	100	88.551	ENSHGLG00100014161	SKIV2L	100	88.791	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021477	Skiv2l	98	59.332	ENSHCOG00000007191	skiv2l	100	59.413	Hippocampus_comes
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.032	ENSIPUG00000016263	skiv2l	100	60.320	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	94.467	ENSSTOG00000014596	SKIV2L	100	94.467	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021477	Skiv2l	71	60.192	ENSLACG00000002986	-	73	61.713	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.462	ENSLAFG00000014231	SKIV2L	100	92.462	Loxodonta_africana
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.424	ENSMFAG00000034235	SKIV2L	100	93.424	Macaca_fascicularis
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.344	ENSMMUG00000000736	SKIV2L	100	93.344	Macaca_mulatta
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.344	ENSMNEG00000044474	SKIV2L	100	93.344	Macaca_nemestrina
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.184	ENSMLEG00000030512	SKIV2L	100	93.184	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.890	ENSMAMG00000002927	skiv2l	99	61.160	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.447	ENSMZEG00005026415	skiv2l	99	61.966	Maylandia_zebra
MGP_CAROLIEiJ_G0021477	Skiv2l	70	51.681	ENSMGAG00000001320	SKIV2L	97	51.681	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021477	Skiv2l	100	94.458	ENSMAUG00000018613	Skiv2l	100	94.699	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.665	ENSMICG00000046331	SKIV2L	100	93.665	Microcebus_murinus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.810	ENSMOCG00000014240	Skiv2l	100	93.810	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.254	ENSMMOG00000014547	skiv2l	98	61.413	Mola_mola
MGP_CAROLIEiJ_G0021477	Skiv2l	100	86.800	ENSMODG00000015052	SKIV2L	100	86.800	Monodelphis_domestica
MGP_CAROLIEiJ_G0021477	Skiv2l	99	59.564	ENSMALG00000010535	skiv2l	98	59.706	Monopterus_albus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	99.587	ENSMUSG00000040356	Skiv2l	100	99.587	Mus_musculus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	98.473	MGP_PahariEiJ_G0020472	Skiv2l	100	98.473	Mus_pahari
MGP_CAROLIEiJ_G0021477	Skiv2l	100	99.174	MGP_SPRETEiJ_G0022382	Skiv2l	100	99.174	Mus_spretus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.943	ENSMPUG00000010567	SKIV2L	100	92.943	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021477	Skiv2l	100	91.339	ENSMLUG00000000628	SKIV2L	100	91.339	Myotis_lucifugus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.911	ENSNBRG00000018650	skiv2l	98	61.309	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021477	Skiv2l	98	90.228	ENSNLEG00000006451	SKIV2L	99	90.309	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021477	Skiv2l	78	92.920	ENSMEUG00000006072	SKIV2L	78	92.920	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.943	ENSOPRG00000003972	SKIV2L	100	92.943	Ochotona_princeps
MGP_CAROLIEiJ_G0021477	Skiv2l	100	91.339	ENSODEG00000017516	SKIV2L	100	91.339	Octodon_degus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	62.160	ENSONIG00000013500	skiv2l	99	62.530	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	94.146	ENSOCUG00000007019	SKIV2L	100	94.146	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.825	ENSORLG00000002021	skiv2l	99	62.108	Oryzias_latipes
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.746	ENSORLG00020009462	skiv2l	99	62.027	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.508	ENSORLG00015016750	skiv2l	99	61.786	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021477	Skiv2l	99	62.371	ENSOMEG00000008531	skiv2l	99	62.419	Oryzias_melastigma
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.665	ENSOGAG00000009578	SKIV2L	100	93.665	Otolemur_garnettii
MGP_CAROLIEiJ_G0021477	Skiv2l	74	70.233	ENSOARG00000001720	-	70	86.972	Ovis_aries
MGP_CAROLIEiJ_G0021477	Skiv2l	100	87.872	ENSOARG00000002411	-	100	87.872	Ovis_aries
MGP_CAROLIEiJ_G0021477	Skiv2l	98	92.227	ENSPPAG00000040211	SKIV2L	99	92.227	Pan_paniscus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.264	ENSPPRG00000005017	SKIV2L	100	93.264	Panthera_pardus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.943	ENSPTIG00000021656	SKIV2L	100	92.943	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.103	ENSPTRG00000017997	SKIV2L	100	93.103	Pan_troglodytes
MGP_CAROLIEiJ_G0021477	Skiv2l	98	92.139	ENSPANG00000011501	SKIV2L	99	92.139	Papio_anubis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.063	ENSPKIG00000011876	skiv2l	99	60.286	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.306	ENSPMGG00000019707	skiv2l	98	60.862	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	95.257	ENSPEMG00000019001	Skiv2l	100	95.257	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021477	Skiv2l	100	86.731	ENSPCIG00000018792	SKIV2L	100	86.731	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.776	ENSPFOG00000002424	skiv2l	99	62.058	Poecilia_formosa
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.905	ENSPLAG00000018304	skiv2l	99	62.188	Poecilia_latipinna
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.697	ENSPMEG00000006997	skiv2l	99	61.977	Poecilia_mexicana
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.048	ENSPREG00000002277	skiv2l	98	60.195	Poecilia_reticulata
MGP_CAROLIEiJ_G0021477	Skiv2l	100	92.622	ENSPPYG00000016472	SKIV2L	100	92.622	Pongo_abelii
MGP_CAROLIEiJ_G0021477	Skiv2l	100	75.812	ENSPCAG00000004178	SKIV2L	77	93.068	Procavia_capensis
MGP_CAROLIEiJ_G0021477	Skiv2l	100	94.387	ENSPCOG00000010308	SKIV2L	100	94.387	Propithecus_coquereli
MGP_CAROLIEiJ_G0021477	Skiv2l	100	91.259	ENSPVAG00000005136	SKIV2L	100	91.259	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021477	Skiv2l	93	66.460	ENSPNYG00000017853	skiv2l	97	66.460	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021477	Skiv2l	98	61.205	ENSPNAG00000011823	skiv2l	99	61.384	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021477	Skiv2l	100	98.312	ENSRNOG00000000421	Skiv2l	100	98.312	Rattus_norvegicus
MGP_CAROLIEiJ_G0021477	Skiv2l	98	90.615	ENSRBIG00000035485	SKIV2L	99	90.615	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.103	ENSRROG00000036429	SKIV2L	100	93.103	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021477	Skiv2l	93	38.528	YLR398C	-	95	38.291	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.585	ENSSBOG00000027920	SKIV2L	100	93.585	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021477	Skiv2l	100	86.480	ENSSHAG00000008963	SKIV2L	100	85.440	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.993	ENSSFOG00015016930	skiv2l	99	61.342	Scleropages_formosus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.960	ENSSMAG00000020185	skiv2l	99	61.285	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.380	ENSSDUG00000019977	skiv2l	99	61.656	Seriola_dumerili
MGP_CAROLIEiJ_G0021477	Skiv2l	99	59.920	ENSSLDG00000024382	skiv2l	98	60.065	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	62.568	ENSSPUG00000012945	SKIV2L	98	62.717	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021477	Skiv2l	94	61.158	ENSSPAG00000012904	skiv2l	98	61.257	Stegastes_partitus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.986	ENSSSCG00000001424	SKIV2L	100	93.986	Sus_scrofa
MGP_CAROLIEiJ_G0021477	Skiv2l	69	66.274	ENSTRUG00000000966	skiv2l	100	55.784	Takifugu_rubripes
MGP_CAROLIEiJ_G0021477	Skiv2l	99	59.729	ENSTNIG00000004382	skiv2l	98	60.065	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021477	Skiv2l	94	92.892	ENSTBEG00000003462	SKIV2L	94	92.892	Tupaia_belangeri
MGP_CAROLIEiJ_G0021477	Skiv2l	100	87.650	ENSTTRG00000005931	SKIV2L	100	87.650	Tursiops_truncatus
MGP_CAROLIEiJ_G0021477	Skiv2l	100	93.424	ENSUAMG00000024336	SKIV2L	100	93.424	Ursus_americanus
MGP_CAROLIEiJ_G0021477	Skiv2l	93	93.718	ENSUMAG00000012666	SKIV2L	99	93.718	Ursus_maritimus
MGP_CAROLIEiJ_G0021477	Skiv2l	98	92.997	ENSVVUG00000022807	SKIV2L	98	92.997	Vulpes_vulpes
MGP_CAROLIEiJ_G0021477	Skiv2l	100	58.459	ENSXETG00000010932	skiv2l	100	58.571	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.717	ENSXCOG00000019517	skiv2l	96	61.882	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021477	Skiv2l	99	61.063	ENSXMAG00000014079	skiv2l	99	61.334	Xiphophorus_maculatus