EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021490 (Gene tree)
Gene ID: 110312699
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 4002 bases
Position: chr17:31725205-31729206
Accession: 110312699
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0044366	LSM	PF01423.22	1.1e-16	1	1
MGP_CAROLIEiJ_P0044369	LSM	PF01423.22	2.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0044370	-	681	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044371	-	647	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044372	-	864	-	MGP_CAROLIEiJ_P0044372	85 (aa)	-	-
MGP_CAROLIEiJ_T0044373	-	679	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044374	-	525	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044375	-	1061	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044367	-	519	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044366	-	838	-	MGP_CAROLIEiJ_P0044366	95 (aa)	XP_021042185	UPI00000E839D
MGP_CAROLIEiJ_T0044365	-	1579	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044369	-	868	XM_021186525	MGP_CAROLIEiJ_P0044369	131 (aa)	XP_021042184	UPI000A319E4E
MGP_CAROLIEiJ_T0044368	-	368	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021490's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021490's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021490	Lsm2	77	31.507	MGP_CAROLIEiJ_G0026467	Lsm10	75	31.507
MGP_CAROLIEiJ_G0021490	Lsm2	92	34.831	MGP_CAROLIEiJ_G0031158	Lsm4	70	35.644

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSG00000204392	LSM2	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSAPOG00000017967	si:ch73-14h10.2	100	98.947	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSAMEG00000006483	LSM2	100	100.000	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSAOCG00000006949	si:ch73-14h10.2	100	80.800	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSATEG00000011376	si:ch73-14h10.2	100	98.947	Anabas_testudineus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSACAG00000017281	LSM2	90	100.000	Anolis_carolinensis
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSANAG00000028372	LSM2	100	100.000	Aotus_nancymaae
MGP_CAROLIEiJ_G0021490	Lsm2	96	81.319	ENSANAG00000028033	-	96	81.319	Aotus_nancymaae
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSACLG00000024717	smx5	100	98.947	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSAMXG00000036868	si:ch73-14h10.2	100	98.947	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSBTAG00000005634	LSM2	100	100.000	Bos_taurus
MGP_CAROLIEiJ_G0021490	Lsm2	99	84.043	WBGene00001808	gut-2	97	84.043	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCJAG00000040899	LSM2	100	100.000	Callithrix_jacchus
MGP_CAROLIEiJ_G0021490	Lsm2	75	98.592	ENSCAFG00020016978	-	88	98.592	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSCHIG00000016153	LSM2	100	100.000	Capra_hircus
MGP_CAROLIEiJ_G0021490	Lsm2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSTSYG00000034844	LSM2	100	100.000	Carlito_syrichta
MGP_CAROLIEiJ_G0021490	Lsm2	76	100.000	ENSCAPG00000009970	LSM2	92	100.000	Cavia_aperea
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCPOG00000021053	LSM2	100	100.000	Cavia_porcellus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCCAG00000024276	LSM2	100	100.000	Cebus_capucinus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCATG00000013737	LSM2	100	100.000	Cercocebus_atys
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCLAG00000008081	LSM2	100	100.000	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCSAG00000008800	LSM2	100	100.000	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCHOG00000007702	LSM2	100	100.000	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021490	Lsm2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCANG00000039576	LSM2	100	100.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSCGRG00001013932	Lsm2	100	100.000	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021490	Lsm2	76	100.000	ENSCGRG00000013311	Lsm2	62	100.000	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSCSEG00000002911	si:ch73-14h10.2	100	98.947	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSDNOG00000002633	LSM2	100	100.000	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSDORG00000026571	Lsm2	100	100.000	Dipodomys_ordii
MGP_CAROLIEiJ_G0021490	Lsm2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSEASG00005015670	LSM2	79	100.000	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSECAG00000018791	LSM2	79	100.000	Equus_caballus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSELUG00000008241	smx5	100	100.000	Esox_lucius
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSFCAG00000045887	LSM2	100	100.000	Felis_catus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSFDAG00000000390	LSM2	100	100.000	Fukomys_damarensis
MGP_CAROLIEiJ_G0021490	Lsm2	99	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSGAFG00000017286	si:ch73-14h10.2	100	98.947	Gambusia_affinis
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSGACG00000003827	si:ch73-14h10.2	100	98.947	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSGAGG00000012458	LSM2	100	100.000	Gopherus_agassizii
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSGGOG00000011383	LSM2	100	100.000	Gorilla_gorilla
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSHGLG00000011299	LSM2	100	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSHGLG00100017194	LSM2	100	100.000	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSHCOG00000014057	si:ch73-14h10.2	100	98.947	Hippocampus_comes
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSIPUG00000010539	lsm2	100	98.947	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSSTOG00000013144	LSM2	100	100.000	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021490	Lsm2	94	77.528	ENSJJAG00000019477	-	100	77.528	Jaculus_jaculus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSKMAG00000014909	si:ch73-14h10.2	100	98.947	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSLBEG00000025781	si:ch73-14h10.2	98	97.872	Labrus_bergylta
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSLACG00000015064	LSM2	100	98.947	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSLOCG00000005228	si:ch73-14h10.2	100	98.947	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSLAFG00000016139	LSM2	100	100.000	Loxodonta_africana
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMFAG00000001016	LSM2	100	100.000	Macaca_fascicularis
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMMUG00000006832	LSM2	100	100.000	Macaca_mulatta
MGP_CAROLIEiJ_G0021490	Lsm2	99	81.915	ENSMMUG00000045473	-	97	81.915	Macaca_mulatta
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMNEG00000045355	LSM2	100	100.000	Macaca_nemestrina
MGP_CAROLIEiJ_G0021490	Lsm2	79	85.333	ENSMNEG00000040973	-	91	85.333	Macaca_nemestrina
MGP_CAROLIEiJ_G0021490	Lsm2	99	80.851	ENSMLEG00000031181	-	97	80.851	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMLEG00000037369	-	100	100.000	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSMAMG00000010053	si:ch73-14h10.2	73	98.947	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021490	Lsm2	99	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMAUG00000021966	Lsm2	100	100.000	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021490	Lsm2	76	79.167	ENSMICG00000046764	-	92	79.167	Microcebus_murinus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMOCG00000015306	Lsm2	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSMALG00000016490	si:ch73-14h10.2	100	98.947	Monopterus_albus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSMUSG00000007050	Lsm2	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	MGP_PahariEiJ_G0020485	Lsm2	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	MGP_SPRETEiJ_G0022395	Lsm2	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSNGAG00000003997	Lsm2	100	100.000	Nannospalax_galili
MGP_CAROLIEiJ_G0021490	Lsm2	99	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSNLEG00000035542	LSM2	100	100.000	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021490	Lsm2	75	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSOPRG00000003668	LSM2	100	100.000	Ochotona_princeps
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSODEG00000017583	LSM2	100	100.000	Octodon_degus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSONIG00000019321	si:ch73-14h10.2	100	98.947	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSOANG00000005398	LSM2	100	100.000	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSOCUG00000002583	LSM2	100	100.000	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSORLG00000029858	si:ch73-14h10.2	100	98.947	Oryzias_latipes
MGP_CAROLIEiJ_G0021490	Lsm2	100	75.806	ENSORLG00015000465	si:ch73-14h10.2	100	75.806	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSOMEG00000002892	si:ch73-14h10.2	100	98.947	Oryzias_melastigma
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSOARG00000004575	LSM2	100	100.000	Ovis_aries
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPPAG00000032431	LSM2	100	100.000	Pan_paniscus
MGP_CAROLIEiJ_G0021490	Lsm2	79	86.667	ENSPPAG00000043941	-	93	86.667	Pan_paniscus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPPRG00000015353	LSM2	100	100.000	Panthera_pardus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSPTIG00000010303	LSM2	99	100.000	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPTRG00000017986	LSM2	100	100.000	Pan_troglodytes
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPANG00000024577	LSM2	100	100.000	Papio_anubis
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPKIG00000007028	si:ch73-14h10.2	100	98.947	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSPSIG00000004458	LSM2	78	100.000	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021490	Lsm2	99	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPFOG00000001621	si:ch73-14h10.2	100	98.947	Poecilia_formosa
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPLAG00000017165	si:ch73-14h10.2	100	98.947	Poecilia_latipinna
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPMEG00000019574	si:ch73-14h10.2	100	98.947	Poecilia_mexicana
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPPYG00000016461	-	54	100.000	Pongo_abelii
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPCAG00000013737	LSM2	100	100.000	Procavia_capensis
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPCOG00000020134	LSM2	100	100.000	Propithecus_coquereli
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSPVAG00000012405	LSM2	100	100.000	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPNYG00000019298	smx5	100	98.947	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021490	Lsm2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSRNOG00000048725	Lsm2	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0021490	Lsm2	79	86.667	ENSRBIG00000011356	-	91	86.667	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSRBIG00000010172	LSM2	100	100.000	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021490	Lsm2	79	86.667	ENSRROG00000030708	-	91	86.667	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSRROG00000030345	LSM2	100	100.000	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021490	Lsm2	100	63.158	YBL026W	LSM2	100	63.158	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSSBOG00000018943	LSM2	100	100.000	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSFOG00015006734	lsm2	100	98.947	Scleropages_formosus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSDUG00000021605	smx5	100	98.947	Seriola_dumerili
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSLDG00000002765	si:ch73-14h10.2	100	98.947	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSPUG00000009631	LSM2	100	98.947	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSSPAG00000016904	si:ch73-14h10.2	100	98.947	Stegastes_partitus
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSSSCG00000039021	LSM2	100	100.000	Sus_scrofa
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
MGP_CAROLIEiJ_G0021490	Lsm2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021490	Lsm2	100	100.000	ENSTTRG00000014131	LSM2	100	100.000	Tursiops_truncatus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSUMAG00000013425	LSM2	83	84.167	Ursus_maritimus
MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	ENSVPAG00000001761	LSM2	100	100.000	Vicugna_pacos
MGP_CAROLIEiJ_G0021490	Lsm2	79	98.667	ENSVVUG00000016264	-	93	98.667	Vulpes_vulpes
MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus