EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021491 (Gene tree)
Gene ID: 110312340
Gene Symbol: Vars
Alias: Bat-6|Bat6|D17H6S56E|G7a|Vars2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 14221 bases
Position: chr17:31742685-31756905
Accession: 110312340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0044376	tRNA-synt_1g	PF09334.11	7.6e-11	1	1
MGP_CAROLIEiJ_P0044377	tRNA-synt_1g	PF09334.11	7.6e-11	1	1
MGP_CAROLIEiJ_P0044376	Anticodon_1	PF08264.13	3.7e-32	1	1
MGP_CAROLIEiJ_P0044377	Anticodon_1	PF08264.13	3.7e-32	1	1
MGP_CAROLIEiJ_P0044376	tRNA-synt_1	PF00133.22	7e-202	1	1
MGP_CAROLIEiJ_P0044377	tRNA-synt_1	PF00133.22	7e-202	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0044378	-	819	-	MGP_CAROLIEiJ_P0044378	230 (aa)	-	-
MGP_CAROLIEiJ_T0044379	-	421	-	MGP_CAROLIEiJ_P0044379	125 (aa)	-	-
MGP_CAROLIEiJ_T0044376	-	4144	XM_021185839	MGP_CAROLIEiJ_P0044376	1263 (aa)	XP_021041498	UPI000A316BDC
MGP_CAROLIEiJ_T0044377	-	4092	XM_021185838	MGP_CAROLIEiJ_P0044377	1263 (aa)	XP_021041497	UPI000A316BDC
MGP_CAROLIEiJ_T0044388	-	839	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044381	-	475	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044380	-	3733	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044383	-	753	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044382	-	347	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044385	-	805	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044384	-	557	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044387	-	744	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0044386	-	388	-	MGP_CAROLIEiJ_P0044386	129 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021491's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021491's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021491	Vars	82	50.336	MGP_CAROLIEiJ_G0021529	Vars2	93	52.661

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021491	Vars	100	92.563	ENSG00000204394	VARS	100	93.038	Homo_sapiens
MGP_CAROLIEiJ_G0021491	Vars	98	64.526	ENSAPOG00000020921	vars	99	64.205	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021491	Vars	98	64.526	ENSAPOG00000020691	vars	99	64.205	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021491	Vars	100	93.202	ENSAMEG00000006417	VARS	100	93.360	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021491	Vars	100	65.569	ENSACIG00000013752	vars	100	65.460	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021491	Vars	100	65.082	ENSAOCG00000002447	vars	100	64.252	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021491	Vars	100	65.004	ENSAPEG00000010638	vars	99	65.004	Amphiprion_percula
MGP_CAROLIEiJ_G0021491	Vars	100	65.039	ENSATEG00000020219	vars	100	64.539	Anabas_testudineus
MGP_CAROLIEiJ_G0021491	Vars	90	71.231	ENSACAG00000029133	-	99	71.231	Anolis_carolinensis
MGP_CAROLIEiJ_G0021491	Vars	100	92.405	ENSANAG00000015453	VARS	100	92.880	Aotus_nancymaae
MGP_CAROLIEiJ_G0021491	Vars	100	64.961	ENSACLG00000025699	vars	97	64.852	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021491	Vars	94	66.778	ENSAMXG00000017716	vars	95	66.694	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021491	Vars	100	92.563	ENSBTAG00000005631	VARS	100	93.038	Bos_taurus
MGP_CAROLIEiJ_G0021491	Vars	100	92.168	ENSCJAG00000002604	VARS	100	92.642	Callithrix_jacchus
MGP_CAROLIEiJ_G0021491	Vars	100	92.405	ENSCAFG00000000636	VARS	100	92.563	Canis_familiaris
MGP_CAROLIEiJ_G0021491	Vars	94	92.568	ENSCAFG00020020790	VARS	96	92.736	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021491	Vars	100	92.722	ENSCHIG00000011008	VARS	100	93.196	Capra_hircus
MGP_CAROLIEiJ_G0021491	Vars	100	92.880	ENSTSYG00000001567	VARS	100	93.354	Carlito_syrichta
MGP_CAROLIEiJ_G0021491	Vars	91	91.003	ENSCAPG00000013736	VARS	99	90.657	Cavia_aperea
MGP_CAROLIEiJ_G0021491	Vars	100	91.930	ENSCPOG00000000870	VARS	100	91.614	Cavia_porcellus
MGP_CAROLIEiJ_G0021491	Vars	100	93.196	ENSCCAG00000035656	VARS	100	95.025	Cebus_capucinus
MGP_CAROLIEiJ_G0021491	Vars	100	93.513	ENSCATG00000022394	VARS	100	93.117	Cercocebus_atys
MGP_CAROLIEiJ_G0021491	Vars	93	86.860	ENSCLAG00000009470	VARS	96	86.529	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021491	Vars	100	93.750	ENSCSAG00000008784	VARS	100	93.354	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021491	Vars	77	74.435	ENSCPBG00000007943	VARS	96	74.538	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021491	Vars	100	93.671	ENSCANG00000033570	VARS	100	93.275	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021491	Vars	100	94.778	ENSCGRG00001005686	Vars	100	95.174	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021491	Vars	92	89.280	ENSCGRG00000013352	Vars	78	89.698	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021491	Vars	100	64.557	ENSCSEG00000019652	vars	100	64.478	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021491	Vars	100	65.785	ENSCVAG00000022398	vars	100	65.785	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021491	Vars	100	65.058	ENSDARG00000044575	vars	100	65.447	Danio_rerio
MGP_CAROLIEiJ_G0021491	Vars	84	92.568	ENSDORG00000016433	Vars	95	92.192	Dipodomys_ordii
MGP_CAROLIEiJ_G0021491	Vars	68	86.257	ENSETEG00000003824	VARS	76	86.257	Echinops_telfairi
MGP_CAROLIEiJ_G0021491	Vars	51	71.377	ENSEBUG00000007086	vars	84	70.332	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021491	Vars	57	62.500	ENSEBUG00000004637	vars	100	62.775	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021491	Vars	100	93.434	ENSEASG00005015673	VARS	100	93.908	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021491	Vars	100	93.281	ENSECAG00000014620	VARS	100	93.992	Equus_caballus
MGP_CAROLIEiJ_G0021491	Vars	78	92.042	ENSEEUG00000004116	VARS	80	92.042	Erinaceus_europaeus
MGP_CAROLIEiJ_G0021491	Vars	100	64.302	ENSELUG00000006550	vars	97	64.456	Esox_lucius
MGP_CAROLIEiJ_G0021491	Vars	100	92.880	ENSFCAG00000004510	VARS	100	93.196	Felis_catus
MGP_CAROLIEiJ_G0021491	Vars	82	92.062	ENSFDAG00000011401	VARS	100	92.062	Fukomys_damarensis
MGP_CAROLIEiJ_G0021491	Vars	100	65.863	ENSFHEG00000010672	vars	100	65.941	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021491	Vars	92	66.555	ENSGMOG00000014908	vars	97	66.639	Gadus_morhua
MGP_CAROLIEiJ_G0021491	Vars	100	66.044	ENSGAFG00000021630	vars	100	66.044	Gambusia_affinis
MGP_CAROLIEiJ_G0021491	Vars	92	66.583	ENSGACG00000009601	vars	98	66.222	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021491	Vars	50	64.557	ENSGAGG00000006508	-	91	64.399	Gopherus_agassizii
MGP_CAROLIEiJ_G0021491	Vars	100	93.592	ENSGGOG00000011364	VARS	100	93.196	Gorilla_gorilla
MGP_CAROLIEiJ_G0021491	Vars	100	64.961	ENSHBUG00000017151	vars	97	64.852	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021491	Vars	100	91.686	ENSHGLG00000011646	VARS	100	91.686	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021491	Vars	93	83.541	ENSHGLG00100018062	VARS	100	83.375	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021491	Vars	99	65.031	ENSHCOG00000012198	vars	99	65.133	Hippocampus_comes
MGP_CAROLIEiJ_G0021491	Vars	100	65.525	ENSIPUG00000005218	vars	100	65.681	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021491	Vars	100	93.992	ENSSTOG00000013112	VARS	100	93.676	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021491	Vars	100	73.080	ENSJJAG00000015343	-	99	74.357	Jaculus_jaculus
MGP_CAROLIEiJ_G0021491	Vars	100	92.162	ENSJJAG00000019749	-	100	92.162	Jaculus_jaculus
MGP_CAROLIEiJ_G0021491	Vars	100	65.850	ENSKMAG00000009455	vars	100	65.850	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021491	Vars	100	64.743	ENSLBEG00000010341	vars	100	64.585	Labrus_bergylta
MGP_CAROLIEiJ_G0021491	Vars	94	62.366	ENSLACG00000015232	VARS	99	62.777	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021491	Vars	100	66.797	ENSLOCG00000004240	vars	100	66.875	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021491	Vars	100	92.716	ENSLAFG00000023090	VARS	100	92.716	Loxodonta_africana
MGP_CAROLIEiJ_G0021491	Vars	100	93.750	ENSMFAG00000001032	VARS	100	93.354	Macaca_fascicularis
MGP_CAROLIEiJ_G0021491	Vars	100	93.750	ENSMMUG00000006828	VARS	100	93.354	Macaca_mulatta
MGP_CAROLIEiJ_G0021491	Vars	100	93.908	ENSMNEG00000042072	VARS	100	93.513	Macaca_nemestrina
MGP_CAROLIEiJ_G0021491	Vars	100	93.671	ENSMLEG00000039307	VARS	100	93.275	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021491	Vars	100	65.160	ENSMAMG00000003949	vars	100	65.183	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021491	Vars	100	64.961	ENSMZEG00005018327	vars	100	64.376	Maylandia_zebra
MGP_CAROLIEiJ_G0021491	Vars	100	94.146	ENSMAUG00000006715	Vars	100	94.620	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021491	Vars	100	92.642	ENSMICG00000003548	VARS	100	94.527	Microcebus_murinus
MGP_CAROLIEiJ_G0021491	Vars	100	93.191	ENSMOCG00000015404	Vars	100	93.191	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021491	Vars	100	64.201	ENSMMOG00000015801	vars	100	64.044	Mola_mola
MGP_CAROLIEiJ_G0021491	Vars	100	86.155	ENSMODG00000015204	-	100	85.680	Monodelphis_domestica
MGP_CAROLIEiJ_G0021491	Vars	99	65.066	ENSMALG00000022532	vars	99	64.957	Monopterus_albus
MGP_CAROLIEiJ_G0021491	Vars	100	99.446	ENSMUSG00000007029	Vars	100	99.446	Mus_musculus
MGP_CAROLIEiJ_G0021491	Vars	100	98.575	MGP_PahariEiJ_G0020486	Vars	100	98.575	Mus_pahari
MGP_CAROLIEiJ_G0021491	Vars	100	99.525	MGP_SPRETEiJ_G0022396	Vars	100	99.525	Mus_spretus
MGP_CAROLIEiJ_G0021491	Vars	100	92.959	ENSMPUG00000010821	VARS	100	93.117	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021491	Vars	78	92.915	ENSMLUG00000013126	VARS	100	92.915	Myotis_lucifugus
MGP_CAROLIEiJ_G0021491	Vars	100	93.983	ENSNGAG00000012151	Vars	100	93.983	Nannospalax_galili
MGP_CAROLIEiJ_G0021491	Vars	100	64.729	ENSNBRG00000020520	vars	100	64.619	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021491	Vars	100	92.247	ENSNLEG00000006351	VARS	100	92.722	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021491	Vars	100	82.753	ENSMEUG00000011378	VARS	100	83.149	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021491	Vars	100	92.801	ENSOPRG00000003607	VARS	100	93.275	Ochotona_princeps
MGP_CAROLIEiJ_G0021491	Vars	100	91.766	ENSODEG00000017681	VARS	100	91.766	Octodon_degus
MGP_CAROLIEiJ_G0021491	Vars	100	65.520	ENSONIG00000013064	vars	99	68.233	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021491	Vars	77	78.954	ENSOANG00000005400	VARS	98	78.478	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021491	Vars	100	90.751	ENSOCUG00000022463	VARS	100	90.830	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021491	Vars	100	65.560	ENSORLG00000013063	vars	100	65.637	Oryzias_latipes
MGP_CAROLIEiJ_G0021491	Vars	100	66.020	ENSORLG00020003504	vars	100	66.098	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021491	Vars	100	65.994	ENSORLG00015009001	vars	100	65.994	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021491	Vars	100	65.916	ENSOMEG00000015016	vars	100	65.916	Oryzias_melastigma
MGP_CAROLIEiJ_G0021491	Vars	100	93.354	ENSOGAG00000007515	VARS	100	93.354	Otolemur_garnettii
MGP_CAROLIEiJ_G0021491	Vars	100	92.801	ENSPPAG00000034012	VARS	100	93.275	Pan_paniscus
MGP_CAROLIEiJ_G0021491	Vars	100	93.038	ENSPPRG00000014855	VARS	100	93.354	Panthera_pardus
MGP_CAROLIEiJ_G0021491	Vars	85	93.123	ENSPTIG00000010462	VARS	95	93.498	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021491	Vars	100	92.880	ENSPTRG00000017985	VARS	100	93.354	Pan_troglodytes
MGP_CAROLIEiJ_G0021491	Vars	100	92.114	ENSPANG00000014565	VARS	100	91.719	Papio_anubis
MGP_CAROLIEiJ_G0021491	Vars	100	64.065	ENSPKIG00000016304	vars	100	64.065	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021491	Vars	100	65.983	ENSPMGG00000023909	vars	100	65.904	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021491	Vars	100	96.361	ENSPEMG00000006639	Vars	100	96.361	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021491	Vars	100	85.997	ENSPCIG00000018553	VARS	100	85.522	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021491	Vars	100	66.044	ENSPFOG00000015690	vars	100	66.044	Poecilia_formosa
MGP_CAROLIEiJ_G0021491	Vars	100	66.299	ENSPLAG00000009590	vars	100	66.299	Poecilia_latipinna
MGP_CAROLIEiJ_G0021491	Vars	100	66.044	ENSPMEG00000004708	vars	100	66.044	Poecilia_mexicana
MGP_CAROLIEiJ_G0021491	Vars	100	64.224	ENSPREG00000013264	vars	100	63.909	Poecilia_reticulata
MGP_CAROLIEiJ_G0021491	Vars	100	91.851	ENSPPYG00000016460	VARS	100	91.851	Pongo_abelii
MGP_CAROLIEiJ_G0021491	Vars	86	92.101	ENSPCAG00000013565	VARS	86	92.101	Procavia_capensis
MGP_CAROLIEiJ_G0021491	Vars	100	92.806	ENSPCOG00000010942	VARS	100	93.518	Propithecus_coquereli
MGP_CAROLIEiJ_G0021491	Vars	100	89.953	ENSPVAG00000012403	VARS	100	89.557	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021491	Vars	100	64.961	ENSPNYG00000022511	vars	100	64.852	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021491	Vars	100	65.400	ENSPNAG00000020962	vars	100	65.376	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021491	Vars	100	97.706	ENSRNOG00000000867	Vars	100	97.706	Rattus_norvegicus
MGP_CAROLIEiJ_G0021491	Vars	100	93.671	ENSRBIG00000041669	VARS	100	93.275	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021491	Vars	100	93.671	ENSRROG00000045490	VARS	100	93.275	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021491	Vars	100	92.247	ENSSBOG00000035402	VARS	100	92.722	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021491	Vars	100	81.020	ENSSHAG00000006937	VARS	100	80.863	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021491	Vars	100	65.379	ENSSFOG00015014272	vars	100	65.379	Scleropages_formosus
MGP_CAROLIEiJ_G0021491	Vars	100	63.975	ENSSMAG00000009596	vars	99	64.053	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021491	Vars	100	64.861	ENSSDUG00000014177	vars	100	64.752	Seriola_dumerili
MGP_CAROLIEiJ_G0021491	Vars	100	64.706	ENSSLDG00000025316	vars	100	64.596	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021491	Vars	100	65.238	ENSSPAG00000017068	vars	100	65.160	Stegastes_partitus
MGP_CAROLIEiJ_G0021491	Vars	100	92.411	ENSSSCG00000038950	VARS	100	93.123	Sus_scrofa
MGP_CAROLIEiJ_G0021491	Vars	82	64.779	ENSTRUG00000012307	vars	98	64.723	Takifugu_rubripes
MGP_CAROLIEiJ_G0021491	Vars	100	65.176	ENSTNIG00000008011	vars	100	65.176	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021491	Vars	53	96.629	ENSTBEG00000004728	-	60	96.629	Tupaia_belangeri
MGP_CAROLIEiJ_G0021491	Vars	100	85.285	ENSTTRG00000014128	VARS	100	85.206	Tursiops_truncatus
MGP_CAROLIEiJ_G0021491	Vars	100	89.072	ENSUAMG00000010424	VARS	100	89.358	Ursus_americanus
MGP_CAROLIEiJ_G0021491	Vars	93	91.746	ENSUMAG00000013486	VARS	98	92.063	Ursus_maritimus
MGP_CAROLIEiJ_G0021491	Vars	100	92.569	ENSVVUG00000021323	VARS	100	92.727	Vulpes_vulpes
MGP_CAROLIEiJ_G0021491	Vars	96	62.753	ENSXETG00000024076	vars	98	62.753	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021491	Vars	100	66.036	ENSXCOG00000019172	vars	100	66.036	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021491	Vars	100	65.888	ENSXMAG00000010927	vars	100	65.888	Xiphophorus_maculatus