EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021779 (Gene tree)
Gene ID: 110312435
Gene Symbol: Safb2
Alias: -
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 23889 bases
Position: chr17:53146067-53169955
Accession: 110312435
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0045343	RRM_1	PF00076.22	6.2e-13	1	1
MGP_CAROLIEiJ_P0045343	SAP	PF02037.27	2.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0045355	-	970	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045356	-	842	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045354	-	1090	-	MGP_CAROLIEiJ_P0045354	214 (aa)	-	-
MGP_CAROLIEiJ_T0045352	-	2098	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045357	-	439	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045350	-	685	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045346	-	1679	-	MGP_CAROLIEiJ_P0045346	382 (aa)	-	-
MGP_CAROLIEiJ_T0045347	-	870	-	MGP_CAROLIEiJ_P0045347	249 (aa)	-	UPI0001889C19
MGP_CAROLIEiJ_T0045344	-	2529	-	MGP_CAROLIEiJ_P0045344	179 (aa)	-	-
MGP_CAROLIEiJ_T0045345	-	558	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045342	-	2624	-	MGP_CAROLIEiJ_P0045342	82 (aa)	-	-
MGP_CAROLIEiJ_T0045343	-	3286	XM_021186015	MGP_CAROLIEiJ_P0045343	992 (aa)	XP_021041674	-
MGP_CAROLIEiJ_T0045353	-	553	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045341	-	438	-	MGP_CAROLIEiJ_P0045341	65 (aa)	-	-
MGP_CAROLIEiJ_T0045351	-	1732	-	MGP_CAROLIEiJ_P0045351	179 (aa)	-	-
MGP_CAROLIEiJ_T0045348	-	886	-	MGP_CAROLIEiJ_P0045348	295 (aa)	-	UPI0001889C18
MGP_CAROLIEiJ_T0045349	-	632	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021779's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021779	Safb2	57	39.806	MGP_CAROLIEiJ_G0032404	Sltm	52	44.144
MGP_CAROLIEiJ_G0021779	Safb2	89	51.250	MGP_CAROLIEiJ_G0021780	Safb	100	60.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021779	Safb2	100	69.085	ENSG00000130254	SAFB2	100	69.384	Homo_sapiens
MGP_CAROLIEiJ_G0021779	Safb2	100	67.333	ENSAMEG00000012146	SAFB2	100	68.531	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021779	Safb2	100	69.583	ENSANAG00000031936	SAFB2	100	69.781	Aotus_nancymaae
MGP_CAROLIEiJ_G0021779	Safb2	99	66.129	ENSBTAG00000001790	SAFB2	99	67.238	Bos_taurus
MGP_CAROLIEiJ_G0021779	Safb2	100	62.162	ENSCJAG00000017205	-	98	59.633	Callithrix_jacchus
MGP_CAROLIEiJ_G0021779	Safb2	99	69.910	ENSCAFG00000018814	SAFB2	99	70.110	Canis_familiaris
MGP_CAROLIEiJ_G0021779	Safb2	99	69.910	ENSCAFG00020018939	SAFB2	99	70.110	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021779	Safb2	99	65.524	ENSCHIG00000024547	SAFB2	99	66.734	Capra_hircus
MGP_CAROLIEiJ_G0021779	Safb2	94	55.802	ENSCAPG00000011771	SAFB2	100	58.475	Cavia_aperea
MGP_CAROLIEiJ_G0021779	Safb2	100	68.150	ENSCPOG00000011394	SAFB2	100	68.645	Cavia_porcellus
MGP_CAROLIEiJ_G0021779	Safb2	100	69.024	ENSCCAG00000017348	SAFB2	100	69.223	Cebus_capucinus
MGP_CAROLIEiJ_G0021779	Safb2	100	68.358	ENSCATG00000039497	SAFB2	100	68.657	Cercocebus_atys
MGP_CAROLIEiJ_G0021779	Safb2	100	69.085	ENSCSAG00000009959	SAFB2	100	69.384	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021779	Safb2	76	61.133	ENSCHOG00000010684	SAFB2	99	61.133	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021779	Safb2	100	65.010	ENSCANG00000024675	SAFB2	100	65.907	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021779	Safb2	100	84.290	ENSCGRG00001015833	Safb2	100	84.794	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021779	Safb2	100	84.290	ENSCGRG00000011131	Safb2	100	84.794	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021779	Safb2	100	61.290	ENSDNOG00000045791	-	99	60.123	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021779	Safb2	95	63.889	ENSDORG00000016199	Safb2	100	64.095	Dipodomys_ordii
MGP_CAROLIEiJ_G0021779	Safb2	98	60.674	ENSETEG00000016756	-	50	78.475	Echinops_telfairi
MGP_CAROLIEiJ_G0021779	Safb2	90	66.667	ENSEASG00005022952	SAFB2	91	66.667	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021779	Safb2	98	67.890	ENSECAG00000018978	SAFB2	100	67.539	Equus_caballus
MGP_CAROLIEiJ_G0021779	Safb2	99	68.775	ENSFCAG00000011834	SAFB2	99	69.478	Felis_catus
MGP_CAROLIEiJ_G0021779	Safb2	93	66.716	ENSFDAG00000020009	SAFB2	100	66.667	Fukomys_damarensis
MGP_CAROLIEiJ_G0021779	Safb2	99	67.771	ENSGGOG00000015093	SAFB2	99	67.198	Gorilla_gorilla
MGP_CAROLIEiJ_G0021779	Safb2	100	72.438	ENSHGLG00000017442	SAFB2	100	72.438	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021779	Safb2	99	65.861	ENSLAFG00000003836	SAFB2	99	64.955	Loxodonta_africana
MGP_CAROLIEiJ_G0021779	Safb2	100	69.085	ENSMFAG00000039706	SAFB2	100	69.384	Macaca_fascicularis
MGP_CAROLIEiJ_G0021779	Safb2	100	69.185	ENSMMUG00000017968	SAFB2	100	69.483	Macaca_mulatta
MGP_CAROLIEiJ_G0021779	Safb2	100	63.627	ENSMNEG00000032042	SAFB2	100	64.653	Macaca_nemestrina
MGP_CAROLIEiJ_G0021779	Safb2	100	69.085	ENSMLEG00000034562	SAFB2	100	69.384	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021779	Safb2	99	83.051	ENSMAUG00000011573	Safb2	94	84.656	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021779	Safb2	100	68.625	ENSMICG00000008711	SAFB2	99	68.725	Microcebus_murinus
MGP_CAROLIEiJ_G0021779	Safb2	100	81.653	ENSMOCG00000006827	Safb2	100	81.552	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021779	Safb2	98	59.879	ENSMODG00000001178	SAFB2	99	59.602	Monodelphis_domestica
MGP_CAROLIEiJ_G0021779	Safb2	100	98.690	ENSMUSG00000042625	Safb2	100	98.690	Mus_musculus
MGP_CAROLIEiJ_G0021779	Safb2	100	96.270	MGP_PahariEiJ_G0020768	Safb2	100	96.270	Mus_pahari
MGP_CAROLIEiJ_G0021779	Safb2	100	97.765	MGP_SPRETEiJ_G0022690	Safb2	100	97.765	Mus_spretus
MGP_CAROLIEiJ_G0021779	Safb2	99	70.050	ENSMPUG00000006106	SAFB2	92	70.251	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021779	Safb2	99	66.335	ENSMLUG00000001050	SAFB2	99	65.040	Myotis_lucifugus
MGP_CAROLIEiJ_G0021779	Safb2	100	68.588	ENSNLEG00000013514	SAFB2	100	68.887	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021779	Safb2	94	56.170	ENSMEUG00000002456	SAFB2	100	56.277	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021779	Safb2	100	61.584	ENSOPRG00000011523	-	100	61.980	Ochotona_princeps
MGP_CAROLIEiJ_G0021779	Safb2	100	66.008	ENSODEG00000014751	SAFB2	100	67.226	Octodon_degus
MGP_CAROLIEiJ_G0021779	Safb2	93	47.929	ENSOANG00000011319	-	55	48.800	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0021779	Safb2	56	46.774	ENSOCUG00000001592	-	98	61.042	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021779	Safb2	100	68.056	ENSOGAG00000006855	SAFB2	100	68.056	Otolemur_garnettii
MGP_CAROLIEiJ_G0021779	Safb2	97	59.429	ENSOARG00000007982	SAFB2	66	65.000	Ovis_aries
MGP_CAROLIEiJ_G0021779	Safb2	100	69.185	ENSPPAG00000043392	SAFB2	100	69.483	Pan_paniscus
MGP_CAROLIEiJ_G0021779	Safb2	99	68.675	ENSPPRG00000011310	SAFB2	99	69.378	Panthera_pardus
MGP_CAROLIEiJ_G0021779	Safb2	82	64.179	ENSPTIG00000015120	SAFB2	90	66.335	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021779	Safb2	100	63.781	ENSPTRG00000010334	SAFB2	100	64.513	Pan_troglodytes
MGP_CAROLIEiJ_G0021779	Safb2	100	68.986	ENSPANG00000007004	SAFB2	100	69.284	Papio_anubis
MGP_CAROLIEiJ_G0021779	Safb2	100	82.000	ENSPEMG00000016015	Safb2	100	82.300	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021779	Safb2	61	66.776	ENSPCIG00000009518	-	99	70.718	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021779	Safb2	100	69.284	ENSPPYG00000009427	SAFB2	100	69.483	Pongo_abelii
MGP_CAROLIEiJ_G0021779	Safb2	100	64.364	ENSPCAG00000006352	SAFB2	99	64.965	Procavia_capensis
MGP_CAROLIEiJ_G0021779	Safb2	99	68.077	ENSPCOG00000023260	SAFB2	99	68.177	Propithecus_coquereli
MGP_CAROLIEiJ_G0021779	Safb2	100	61.622	ENSPVAG00000004902	-	74	80.435	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021779	Safb2	94	80.952	ENSRNOG00000049511	AABR07066522.1	100	82.938	Rattus_norvegicus
MGP_CAROLIEiJ_G0021779	Safb2	100	62.703	ENSRBIG00000033446	SAFB2	100	77.836	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021779	Safb2	100	69.185	ENSRROG00000006606	SAFB2	100	69.483	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021779	Safb2	100	68.290	ENSSBOG00000032315	SAFB2	100	68.796	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021779	Safb2	97	59.918	ENSSHAG00000012703	SAFB2	99	59.397	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021779	Safb2	82	59.515	ENSSARG00000000649	SAFB2	100	59.080	Sorex_araneus
MGP_CAROLIEiJ_G0021779	Safb2	100	68.222	ENSSSCG00000013523	SAFB2	100	69.116	Sus_scrofa
MGP_CAROLIEiJ_G0021779	Safb2	78	59.722	ENSTBEG00000012709	SAFB2	85	59.722	Tupaia_belangeri
MGP_CAROLIEiJ_G0021779	Safb2	94	63.617	ENSTTRG00000013585	SAFB2	93	63.404	Tursiops_truncatus
MGP_CAROLIEiJ_G0021779	Safb2	99	70.863	ENSUAMG00000024695	SAFB2	99	69.730	Ursus_americanus
MGP_CAROLIEiJ_G0021779	Safb2	85	65.665	ENSUMAG00000009585	SAFB2	88	67.405	Ursus_maritimus
MGP_CAROLIEiJ_G0021779	Safb2	76	76.562	ENSVPAG00000012041	SAFB2	89	76.562	Vicugna_pacos
MGP_CAROLIEiJ_G0021779	Safb2	99	70.110	ENSVVUG00000013695	SAFB2	94	77.885	Vulpes_vulpes