EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021780 (Gene tree)
Gene ID: 110312624
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 21753 bases
Position: chr17:53170183-53191935
Accession: 110312624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0045361	RRM_5	PF13893.6	5.8e-06	1	1
MGP_CAROLIEiJ_P0045359	RRM_5	PF13893.6	5.8e-06	1	1
MGP_CAROLIEiJ_P0045361	RRM_1	PF00076.22	2.6e-12	1	1
MGP_CAROLIEiJ_P0045359	RRM_1	PF00076.22	2.6e-12	1	1
MGP_CAROLIEiJ_P0045361	SAP	PF02037.27	1.6e-10	1	1
MGP_CAROLIEiJ_P0045359	SAP	PF02037.27	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0045360	-	342	-	MGP_CAROLIEiJ_P0045360	44 (aa)	-	-
MGP_CAROLIEiJ_T0045361	-	3106	-	MGP_CAROLIEiJ_P0045361	937 (aa)	-	UPI000A319D90
MGP_CAROLIEiJ_T0045362	-	774	-	MGP_CAROLIEiJ_P0045362	168 (aa)	-	-
MGP_CAROLIEiJ_T0045363	-	2046	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045364	-	714	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045365	-	721	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045366	-	405	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045367	-	1057	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045368	-	424	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045359	-	3121	XM_021186379	MGP_CAROLIEiJ_P0045359	939 (aa)	XP_021042038	UPI000A318A32
MGP_CAROLIEiJ_T0045358	-	1816	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021780	Safb	100	60.479	MGP_CAROLIEiJ_G0021779	Safb2	89	51.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021780	Safb	100	84.255	ENSG00000160633	SAFB	100	84.255	Homo_sapiens
MGP_CAROLIEiJ_G0021780	Safb	100	83.546	ENSAMEG00000012254	SAFB	100	82.484	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021780	Safb	94	39.203	ENSACIG00000006247	safb	52	53.782	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021780	Safb	93	43.107	ENSAOCG00000006308	safb	67	41.111	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021780	Safb	90	59.096	ENSAPLG00000006355	-	65	55.459	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021780	Safb	94	61.348	ENSAPLG00000005780	-	100	60.562	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021780	Safb	100	83.830	ENSANAG00000028821	SAFB	100	83.830	Aotus_nancymaae
MGP_CAROLIEiJ_G0021780	Safb	63	59.016	ENSACLG00000001926	safb	52	58.537	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021780	Safb	100	80.213	ENSBTAG00000007875	SAFB	100	80.213	Bos_taurus
MGP_CAROLIEiJ_G0021780	Safb	82	85.638	ENSCJAG00000017081	SAFB	100	90.149	Callithrix_jacchus
MGP_CAROLIEiJ_G0021780	Safb	100	84.861	ENSCAFG00000018803	SAFB	87	84.861	Canis_familiaris
MGP_CAROLIEiJ_G0021780	Safb	100	84.861	ENSCAFG00020018943	SAFB	100	84.861	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021780	Safb	100	79.787	ENSCHIG00000007262	SAFB	100	79.787	Capra_hircus
MGP_CAROLIEiJ_G0021780	Safb	57	75.752	ENSTSYG00000001851	-	53	86.667	Carlito_syrichta
MGP_CAROLIEiJ_G0021780	Safb	93	81.407	ENSCAPG00000012121	SAFB	100	81.407	Cavia_aperea
MGP_CAROLIEiJ_G0021780	Safb	100	85.307	ENSCPOG00000026322	SAFB	100	85.307	Cavia_porcellus
MGP_CAROLIEiJ_G0021780	Safb	100	84.166	ENSCCAG00000020193	SAFB	100	83.741	Cebus_capucinus
MGP_CAROLIEiJ_G0021780	Safb	100	84.149	ENSCATG00000029994	SAFB	100	84.149	Cercocebus_atys
MGP_CAROLIEiJ_G0021780	Safb	100	84.501	ENSCLAG00000007734	SAFB	100	85.987	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021780	Safb	100	84.043	ENSCSAG00000009949	SAFB	100	84.043	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021780	Safb	87	95.238	ENSCHOG00000003208	SAFB	93	95.238	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021780	Safb	92	60.367	ENSCPBG00000010928	-	99	59.450	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021780	Safb	91	57.222	ENSCPBG00000010936	-	63	54.174	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021780	Safb	96	93.035	ENSCANG00000004774	-	99	93.035	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021780	Safb	100	78.998	ENSCANG00000019754	-	100	78.998	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021780	Safb	100	95.527	ENSCGRG00001002254	Safb	100	95.527	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021780	Safb	92	91.451	ENSCGRG00000011529	Safb	97	91.451	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021780	Safb	75	46.181	ENSCSEG00000019870	safb	53	53.968	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021780	Safb	91	42.369	ENSDARG00000020467	safb	60	62.500	Danio_rerio
MGP_CAROLIEiJ_G0021780	Safb	100	82.147	ENSDNOG00000015746	SAFB	95	80.383	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021780	Safb	100	80.274	ENSDORG00000016200	Safb	100	79.789	Dipodomys_ordii
MGP_CAROLIEiJ_G0021780	Safb	74	85.507	ENSETEG00000018679	SAFB	85	85.507	Echinops_telfairi
MGP_CAROLIEiJ_G0021780	Safb	100	82.434	ENSEASG00005023019	SAFB	100	81.481	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021780	Safb	100	84.132	ENSECAG00000018659	SAFB	89	83.919	Equus_caballus
MGP_CAROLIEiJ_G0021780	Safb	96	42.418	ENSELUG00000022327	safb	57	58.065	Esox_lucius
MGP_CAROLIEiJ_G0021780	Safb	100	84.771	ENSFCAG00000011835	SAFB	100	84.771	Felis_catus
MGP_CAROLIEiJ_G0021780	Safb	91	54.696	ENSFALG00000013881	-	64	53.925	Ficedula_albicollis
MGP_CAROLIEiJ_G0021780	Safb	100	61.595	ENSFALG00000013882	-	92	60.883	Ficedula_albicollis
MGP_CAROLIEiJ_G0021780	Safb	100	78.500	ENSFDAG00000020306	SAFB	99	82.575	Fukomys_damarensis
MGP_CAROLIEiJ_G0021780	Safb	100	61.870	ENSGALG00000013365	-	100	60.947	Gallus_gallus
MGP_CAROLIEiJ_G0021780	Safb	96	59.263	ENSGAGG00000008424	-	67	56.299	Gopherus_agassizii
MGP_CAROLIEiJ_G0021780	Safb	71	57.396	ENSGAGG00000017702	-	94	58.085	Gopherus_agassizii
MGP_CAROLIEiJ_G0021780	Safb	100	84.043	ENSGGOG00000015109	SAFB	100	84.043	Gorilla_gorilla
MGP_CAROLIEiJ_G0021780	Safb	97	36.774	ENSHBUG00000009218	safb	53	50.000	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021780	Safb	100	86.873	ENSHGLG00000015883	SAFB	100	86.873	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021780	Safb	100	91.133	ENSHGLG00100004228	SAFB	100	90.338	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021780	Safb	55	48.694	ENSIPUG00000024869	safb2	63	44.372	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021780	Safb	93	87.071	ENSSTOG00000002783	SAFB	100	87.071	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021780	Safb	100	88.055	ENSJJAG00000009021	Safb	100	87.949	Jaculus_jaculus
MGP_CAROLIEiJ_G0021780	Safb	66	46.656	ENSLACG00000018090	SAFB	65	49.048	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021780	Safb	97	45.273	ENSLOCG00000003613	safb	74	44.545	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021780	Safb	99	81.217	ENSLAFG00000003840	SAFB	100	80.790	Loxodonta_africana
MGP_CAROLIEiJ_G0021780	Safb	100	84.060	ENSMFAG00000003885	SAFB	100	83.634	Macaca_fascicularis
MGP_CAROLIEiJ_G0021780	Safb	100	84.149	ENSMMUG00000017970	SAFB	100	84.149	Macaca_mulatta
MGP_CAROLIEiJ_G0021780	Safb	100	80.659	ENSMNEG00000035637	SAFB	100	79.659	Macaca_nemestrina
MGP_CAROLIEiJ_G0021780	Safb	100	78.919	ENSMLEG00000038637	SAFB	100	77.358	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021780	Safb	89	41.826	ENSMZEG00005009120	safb	52	58.537	Maylandia_zebra
MGP_CAROLIEiJ_G0021780	Safb	97	59.674	ENSMGAG00000001101	-	100	59.457	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021780	Safb	89	55.855	ENSMGAG00000001051	-	100	56.975	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021780	Safb	52	96.914	ENSMAUG00000005013	Safb	100	96.914	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021780	Safb	100	80.871	ENSMICG00000008739	-	100	79.702	Microcebus_murinus
MGP_CAROLIEiJ_G0021780	Safb	85	69.738	ENSMICG00000046795	-	98	86.170	Microcebus_murinus
MGP_CAROLIEiJ_G0021780	Safb	100	94.787	ENSMOCG00000014040	Safb	100	94.787	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021780	Safb	100	68.951	ENSMODG00000001236	SAFB	100	69.263	Monodelphis_domestica
MGP_CAROLIEiJ_G0021780	Safb	93	40.307	ENSMALG00000020330	safb	68	39.843	Monopterus_albus
MGP_CAROLIEiJ_G0021780	Safb	100	99.361	ENSMUSG00000071054	Safb	100	99.361	Mus_musculus
MGP_CAROLIEiJ_G0021780	Safb	100	99.255	MGP_PahariEiJ_G0020769	Safb	100	99.255	Mus_pahari
MGP_CAROLIEiJ_G0021780	Safb	100	84.574	ENSMPUG00000006123	SAFB	94	84.574	Mustela_putorius_furo
MGP_CAROLIEiJ_G0021780	Safb	100	83.511	ENSMLUG00000001081	SAFB	100	83.511	Myotis_lucifugus
MGP_CAROLIEiJ_G0021780	Safb	100	87.885	ENSNGAG00000019882	Safb	100	87.885	Nannospalax_galili
MGP_CAROLIEiJ_G0021780	Safb	96	84.146	ENSNLEG00000013551	SAFB	100	84.035	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021780	Safb	89	78.297	ENSOPRG00000011561	-	100	79.017	Ochotona_princeps
MGP_CAROLIEiJ_G0021780	Safb	100	86.943	ENSODEG00000014838	SAFB	100	86.943	Octodon_degus
MGP_CAROLIEiJ_G0021780	Safb	91	75.615	ENSOCUG00000014628	SAFB	63	76.007	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021780	Safb	100	79.259	ENSOGAG00000027769	SAFB	100	78.519	Otolemur_garnettii
MGP_CAROLIEiJ_G0021780	Safb	79	72.999	ENSOARG00000007856	-	100	72.727	Ovis_aries
MGP_CAROLIEiJ_G0021780	Safb	100	76.915	ENSOARG00000007662	-	100	75.000	Ovis_aries
MGP_CAROLIEiJ_G0021780	Safb	100	84.060	ENSPPAG00000035129	SAFB	100	83.634	Pan_paniscus
MGP_CAROLIEiJ_G0021780	Safb	100	84.771	ENSPPRG00000017197	SAFB	100	84.771	Panthera_pardus
MGP_CAROLIEiJ_G0021780	Safb	100	84.060	ENSPTRG00000010335	SAFB	100	83.634	Pan_troglodytes
MGP_CAROLIEiJ_G0021780	Safb	100	83.953	ENSPANG00000007770	SAFB	100	83.528	Papio_anubis
MGP_CAROLIEiJ_G0021780	Safb	99	58.230	ENSPSIG00000009367	-	63	55.627	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021780	Safb	100	58.642	ENSPSIG00000011679	-	64	56.706	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021780	Safb	100	95.314	ENSPEMG00000020428	Safb	100	95.314	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021780	Safb	57	78.413	ENSPCIG00000009504	-	100	78.967	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021780	Safb	100	84.435	ENSPPYG00000009428	SAFB	100	84.435	Pongo_abelii
MGP_CAROLIEiJ_G0021780	Safb	100	78.145	ENSPCAG00000006475	SAFB	100	78.038	Procavia_capensis
MGP_CAROLIEiJ_G0021780	Safb	100	76.907	ENSPCOG00000014090	SAFB	100	76.165	Propithecus_coquereli
MGP_CAROLIEiJ_G0021780	Safb	100	76.997	ENSPVAG00000004913	SAFB	100	77.316	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021780	Safb	100	97.021	ENSRNOG00000050543	Safb	100	97.021	Rattus_norvegicus
MGP_CAROLIEiJ_G0021780	Safb	96	79.851	ENSRBIG00000042509	SAFB	88	88.172	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021780	Safb	100	84.060	ENSRROG00000029278	SAFB	100	83.634	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021780	Safb	100	84.255	ENSSBOG00000026291	SAFB	100	84.255	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021780	Safb	93	78.563	ENSSARG00000010475	SAFB	100	78.221	Sorex_araneus
MGP_CAROLIEiJ_G0021780	Safb	59	50.181	ENSSPUG00000009747	-	67	49.453	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021780	Safb	54	48.885	ENSSPUG00000009820	-	64	50.462	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021780	Safb	100	83.562	ENSSSCG00000013522	SAFB	99	83.250	Sus_scrofa
MGP_CAROLIEiJ_G0021780	Safb	96	60.371	ENSTGUG00000000502	-	97	61.011	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021780	Safb	75	85.606	ENSTBEG00000013124	-	74	88.636	Tupaia_belangeri
MGP_CAROLIEiJ_G0021780	Safb	92	92.063	ENSTTRG00000013588	SAFB	92	92.063	Tursiops_truncatus
MGP_CAROLIEiJ_G0021780	Safb	78	84.082	ENSUAMG00000024543	SAFB	99	84.196	Ursus_americanus
MGP_CAROLIEiJ_G0021780	Safb	83	91.489	ENSUMAG00000009734	SAFB	88	91.489	Ursus_maritimus
MGP_CAROLIEiJ_G0021780	Safb	71	92.188	ENSVPAG00000012043	SAFB	78	92.188	Vicugna_pacos
MGP_CAROLIEiJ_G0021780	Safb	100	84.681	ENSVVUG00000013720	SAFB	87	84.681	Vulpes_vulpes
MGP_CAROLIEiJ_G0021780	Safb	67	47.302	ENSXETG00000008755	safb	64	70.455	Xenopus_tropicalis