EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021839 (Gene tree)
Gene ID: 110283670
Gene Symbol: Rab12
Alias: 2900054P15Rik
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 25382 bases
Position: chr17:62640438-62665819
Accession: 894284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0045504	MMR_HSR1	PF01926.23	5.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0045504	-	2150	-	MGP_CAROLIEiJ_P0045504	291 (aa)	-	UPI0000EE078D
MGP_CAROLIEiJ_T0045505	-	653	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045506	-	381	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0045507	-	671	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0021839	Rab12	75	36.000	MGP_CAROLIEiJ_G0017184	Rab5c	86	38.806
MGP_CAROLIEiJ_G0021839	Rab12	53	31.847	MGP_CAROLIEiJ_G0032562	Mras	80	32.143
MGP_CAROLIEiJ_G0021839	Rab12	71	33.175	MGP_CAROLIEiJ_G0016794	Rab34	76	33.175
MGP_CAROLIEiJ_G0021839	Rab12	54	38.462	MGP_CAROLIEiJ_G0021830	Rab31	90	37.222
MGP_CAROLIEiJ_G0021839	Rab12	59	51.744	MGP_CAROLIEiJ_G0025227	Rab13	84	51.744
MGP_CAROLIEiJ_G0021839	Rab12	63	37.696	MGP_CAROLIEiJ_G0033044	Rab33a	68	41.104
MGP_CAROLIEiJ_G0021839	Rab12	70	37.799	MGP_CAROLIEiJ_G0032346	Rab11a	90	43.796
MGP_CAROLIEiJ_G0021839	Rab12	62	42.308	MGP_CAROLIEiJ_G0025796	Rab2a	85	42.308
MGP_CAROLIEiJ_G0021839	Rab12	54	40.385	MGP_CAROLIEiJ_G0032585	Rab6b	75	40.385
MGP_CAROLIEiJ_G0021839	Rab12	54	30.818	MGP_CAROLIEiJ_G0027024	Rheb	85	30.818
MGP_CAROLIEiJ_G0021839	Rab12	62	47.222	MGP_CAROLIEiJ_G0029992	Rab30	88	47.222
MGP_CAROLIEiJ_G0021839	Rab12	70	37.264	MGP_CAROLIEiJ_G0021415	Rab11b	93	43.885
MGP_CAROLIEiJ_G0021839	Rab12	55	42.593	MGP_CAROLIEiJ_G0017386	Rab37	75	43.210
MGP_CAROLIEiJ_G0021839	Rab12	67	37.755	MGP_CAROLIEiJ_G0023477	-	97	39.456
MGP_CAROLIEiJ_G0021839	Rab12	58	50.296	MGP_CAROLIEiJ_G0016115	Rab1a	82	50.296
MGP_CAROLIEiJ_G0021839	Rab12	60	32.386	MGP_CAROLIEiJ_G0020176	Rabl2	76	32.386
MGP_CAROLIEiJ_G0021839	Rab12	59	45.614	MGP_CAROLIEiJ_G0027632	Rab35	94	43.455
MGP_CAROLIEiJ_G0021839	Rab12	66	36.869	MGP_CAROLIEiJ_G0024976	Rab33b	83	36.224
MGP_CAROLIEiJ_G0021839	Rab12	57	35.119	MGP_CAROLIEiJ_G0014015	Rab23	69	35.119
MGP_CAROLIEiJ_G0021839	Rab12	56	49.697	MGP_CAROLIEiJ_G0021978	Rab18	79	49.697
MGP_CAROLIEiJ_G0021839	Rab12	52	30.464	MGP_CAROLIEiJ_G0025445	Nras	97	30.405
MGP_CAROLIEiJ_G0021839	Rab12	69	30.583	MGP_CAROLIEiJ_G0033573	Rab9	83	34.132
MGP_CAROLIEiJ_G0021839	Rab12	58	49.704	MGP_CAROLIEiJ_G0022536	Rab1b	84	49.704
MGP_CAROLIEiJ_G0021839	Rab12	69	39.500	MGP_CAROLIEiJ_G0019238	Rab2b	80	47.097
MGP_CAROLIEiJ_G0021839	Rab12	52	31.373	MGP_CAROLIEiJ_G0029047	Kras	87	31.325
MGP_CAROLIEiJ_G0021839	Rab12	72	43.396	MGP_CAROLIEiJ_G0017873	Rab15	88	45.213
MGP_CAROLIEiJ_G0021839	Rab12	55	37.107	MGP_CAROLIEiJ_G0024752	Rab22a	81	37.107
MGP_CAROLIEiJ_G0021839	Rab12	56	35.329	MGP_CAROLIEiJ_G0033427	Rab9b	83	35.329
MGP_CAROLIEiJ_G0021839	Rab12	58	40.588	MGP_CAROLIEiJ_G0025171	Rab25	79	40.588
MGP_CAROLIEiJ_G0021839	Rab12	62	37.989	MGP_CAROLIEiJ_G0021741	Rab5a	87	38.365
MGP_CAROLIEiJ_G0021839	Rab12	55	40.252	MGP_CAROLIEiJ_G0030051	Rab6a	76	40.252

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021839	Rab12	84	95.902	ENSG00000206418	RAB12	100	95.902	Homo_sapiens
MGP_CAROLIEiJ_G0021839	Rab12	76	90.541	ENSAMEG00000007452	RAB12	100	88.362	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021839	Rab12	84	83.806	ENSACIG00000020616	rab12	93	84.211	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021839	Rab12	84	83.740	ENSAOCG00000002130	rab12	93	84.581	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021839	Rab12	84	83.740	ENSAPEG00000013255	rab12	93	84.581	Amphiprion_percula
MGP_CAROLIEiJ_G0021839	Rab12	84	84.490	ENSATEG00000019683	rab12	93	85.398	Anabas_testudineus
MGP_CAROLIEiJ_G0021839	Rab12	76	97.738	ENSACAG00000003360	RAB12	100	87.984	Anolis_carolinensis
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSACLG00000007696	rab12	93	85.022	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021839	Rab12	77	86.607	ENSAMXG00000004882	rab12	93	80.870	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021839	Rab12	84	97.541	ENSBTAG00000010356	RAB12	100	97.541	Bos_taurus
MGP_CAROLIEiJ_G0021839	Rab12	86	94.444	ENSCJAG00000015468	RAB12	100	80.294	Callithrix_jacchus
MGP_CAROLIEiJ_G0021839	Rab12	100	89.384	ENSCAFG00020023721	RAB12	100	91.468	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021839	Rab12	84	97.541	ENSCHIG00000016103	RAB12	100	97.541	Capra_hircus
MGP_CAROLIEiJ_G0021839	Rab12	72	98.571	ENSCPOG00000022689	RAB12	100	98.571	Cavia_porcellus
MGP_CAROLIEiJ_G0021839	Rab12	84	95.510	ENSCCAG00000022862	RAB12	100	95.510	Cebus_capucinus
MGP_CAROLIEiJ_G0021839	Rab12	80	97.009	ENSCATG00000037784	RAB12	97	97.009	Cercocebus_atys
MGP_CAROLIEiJ_G0021839	Rab12	86	94.118	ENSCSAG00000017569	RAB12	100	78.613	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021839	Rab12	84	91.429	ENSCPBG00000028375	RAB12	100	91.429	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021839	Rab12	76	98.636	ENSCANG00000031453	RAB12	100	98.636	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021839	Rab12	100	95.222	ENSCGRG00001006958	Rab12	100	95.563	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021839	Rab12	84	83.740	ENSCSEG00000016933	rab12	93	84.581	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021839	Rab12	77	88.341	ENSCVAG00000003539	rab12	93	84.348	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021839	Rab12	84	82.716	ENSDARG00000089428	rab12	93	82.589	Danio_rerio
MGP_CAROLIEiJ_G0021839	Rab12	100	81.505	ENSDNOG00000046064	RAB12	73	82.759	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021839	Rab12	78	98.238	ENSDORG00000008920	Rab12	100	98.238	Dipodomys_ordii
MGP_CAROLIEiJ_G0021839	Rab12	67	66.667	ENSEBUG00000006581	rab12	93	66.667	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021839	Rab12	100	89.384	ENSEASG00005002926	RAB12	100	91.438	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021839	Rab12	100	78.592	ENSECAG00000007384	RAB12	100	80.352	Equus_caballus
MGP_CAROLIEiJ_G0021839	Rab12	84	80.658	ENSELUG00000007123	rab12	93	81.250	Esox_lucius
MGP_CAROLIEiJ_G0021839	Rab12	100	77.876	ENSFCAG00000027710	RAB12	100	81.121	Felis_catus
MGP_CAROLIEiJ_G0021839	Rab12	75	88.128	ENSFHEG00000004319	rab12	93	82.969	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021839	Rab12	71	83.575	ENSGMOG00000012335	rab12	87	83.575	Gadus_morhua
MGP_CAROLIEiJ_G0021839	Rab12	84	89.412	ENSGALG00000033608	RAB12	100	92.400	Gallus_gallus
MGP_CAROLIEiJ_G0021839	Rab12	76	80.717	ENSGACG00000016639	rab12	100	81.166	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021839	Rab12	84	91.429	ENSGAGG00000007278	RAB12	100	91.429	Gopherus_agassizii
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSHBUG00000008497	rab12	93	85.022	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021839	Rab12	83	86.777	ENSHGLG00000006189	RAB12	90	89.669	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021839	Rab12	84	81.301	ENSHCOG00000012376	rab12	93	81.057	Hippocampus_comes
MGP_CAROLIEiJ_G0021839	Rab12	77	86.161	ENSIPUG00000017401	rab12	93	80.702	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021839	Rab12	78	96.476	ENSSTOG00000025122	RAB12	100	96.476	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021839	Rab12	78	98.246	ENSJJAG00000019064	Rab12	100	98.246	Jaculus_jaculus
MGP_CAROLIEiJ_G0021839	Rab12	84	81.893	ENSKMAG00000020056	rab12	93	82.589	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.490	ENSLBEG00000013756	rab12	93	85.398	Labrus_bergylta
MGP_CAROLIEiJ_G0021839	Rab12	89	79.924	ENSLACG00000010461	RAB12	100	83.133	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021839	Rab12	77	89.732	ENSLOCG00000002680	rab12	100	84.337	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021839	Rab12	84	95.122	ENSMFAG00000043551	RAB12	100	95.122	Macaca_fascicularis
MGP_CAROLIEiJ_G0021839	Rab12	100	83.162	ENSMNEG00000040853	RAB12	92	97.414	Macaca_nemestrina
MGP_CAROLIEiJ_G0021839	Rab12	84	84.082	ENSMAMG00000006862	rab12	93	84.956	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSMZEG00005024316	rab12	93	85.022	Maylandia_zebra
MGP_CAROLIEiJ_G0021839	Rab12	70	98.529	ENSMGAG00000009197	RAB12	100	98.529	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021839	Rab12	100	95.918	ENSMAUG00000008371	Rab12	100	95.918	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021839	Rab12	77	97.768	ENSMICG00000030661	RAB12	99	95.339	Microcebus_murinus
MGP_CAROLIEiJ_G0021839	Rab12	75	98.630	ENSMOCG00000000452	Rab12	100	98.630	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021839	Rab12	100	78.402	ENSMODG00000021452	RAB12	100	78.529	Monodelphis_domestica
MGP_CAROLIEiJ_G0021839	Rab12	77	86.161	ENSMALG00000015762	rab12	93	83.628	Monopterus_albus
MGP_CAROLIEiJ_G0021839	Rab12	100	100.000	ENSMUSG00000023460	Rab12	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0021839	Rab12	100	99.313	MGP_PahariEiJ_G0020826	Rab12	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0021839	Rab12	100	99.658	MGP_SPRETEiJ_G0022750	Rab12	100	99.658	Mus_spretus
MGP_CAROLIEiJ_G0021839	Rab12	84	95.885	ENSMLUG00000002883	RAB12	100	95.885	Myotis_lucifugus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.774	ENSNGAG00000019722	-	100	84.774	Nannospalax_galili
MGP_CAROLIEiJ_G0021839	Rab12	79	96.507	ENSNGAG00000024103	-	98	96.507	Nannospalax_galili
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSNBRG00000014428	rab12	93	85.022	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021839	Rab12	84	95.492	ENSNLEG00000006939	RAB12	100	95.492	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021839	Rab12	84	94.715	ENSMEUG00000000493	RAB12	100	94.715	Notamacropus_eugenii
MGP_CAROLIEiJ_G0021839	Rab12	75	98.630	ENSODEG00000006414	RAB12	100	98.630	Octodon_degus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSONIG00000018469	rab12	93	85.022	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.898	ENSORLG00000003902	rab12	93	85.841	Oryzias_latipes
MGP_CAROLIEiJ_G0021839	Rab12	84	84.898	ENSORLG00020005131	rab12	93	85.841	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021839	Rab12	84	84.490	ENSORLG00015007869	rab12	93	85.398	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021839	Rab12	84	84.898	ENSOMEG00000008191	rab12	93	85.841	Oryzias_melastigma
MGP_CAROLIEiJ_G0021839	Rab12	72	98.571	ENSOGAG00000028002	RAB12	99	98.571	Otolemur_garnettii
MGP_CAROLIEiJ_G0021839	Rab12	72	98.095	ENSOARG00000000728	RAB12	96	91.880	Ovis_aries
MGP_CAROLIEiJ_G0021839	Rab12	71	99.029	ENSPPAG00000009152	RAB12	97	99.029	Pan_paniscus
MGP_CAROLIEiJ_G0021839	Rab12	84	96.311	ENSPPRG00000024521	RAB12	100	96.311	Panthera_pardus
MGP_CAROLIEiJ_G0021839	Rab12	84	95.902	ENSPTRG00000009853	RAB12	100	95.902	Pan_troglodytes
MGP_CAROLIEiJ_G0021839	Rab12	84	95.142	ENSPANG00000009320	RAB12	100	95.142	Papio_anubis
MGP_CAROLIEiJ_G0021839	Rab12	65	91.579	ENSPKIG00000008579	rab12	93	87.500	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021839	Rab12	75	85.780	ENSPMGG00000001890	rab12	93	81.858	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021839	Rab12	100	97.938	ENSPEMG00000021032	Rab12	100	97.938	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021839	Rab12	100	76.901	ENSPCIG00000010453	RAB12	85	78.886	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0021839	Rab12	84	81.781	ENSPFOG00000001579	rab12	93	83.333	Poecilia_formosa
MGP_CAROLIEiJ_G0021839	Rab12	84	81.781	ENSPLAG00000013594	rab12	93	83.333	Poecilia_latipinna
MGP_CAROLIEiJ_G0021839	Rab12	84	81.781	ENSPMEG00000010417	rab12	93	83.333	Poecilia_mexicana
MGP_CAROLIEiJ_G0021839	Rab12	84	81.781	ENSPREG00000017487	rab12	93	83.333	Poecilia_reticulata
MGP_CAROLIEiJ_G0021839	Rab12	100	77.059	ENSPPYG00000009015	-	100	80.000	Pongo_abelii
MGP_CAROLIEiJ_G0021839	Rab12	84	96.721	ENSPCAG00000015007	RAB12	100	96.721	Procavia_capensis
MGP_CAROLIEiJ_G0021839	Rab12	84	95.902	ENSPCOG00000019816	RAB12	100	95.902	Propithecus_coquereli
MGP_CAROLIEiJ_G0021839	Rab12	84	95.902	ENSPVAG00000002757	RAB12	100	95.902	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSPNYG00000023905	rab12	93	85.022	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSPNYG00000005654	rab12	93	85.022	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021839	Rab12	77	87.946	ENSPNAG00000015031	rab12	93	81.739	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021839	Rab12	84	91.870	ENSRNOG00000019295	Rab12	100	92.276	Rattus_norvegicus
MGP_CAROLIEiJ_G0021839	Rab12	80	97.414	ENSRBIG00000028760	RAB12	99	97.414	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021839	Rab12	78	98.246	ENSRROG00000019249	RAB12	95	98.246	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021839	Rab12	73	97.642	ENSSBOG00000021125	RAB12	81	97.642	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021839	Rab12	77	92.920	ENSSHAG00000001489	RAB12	100	92.920	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0021839	Rab12	75	87.671	ENSSMAG00000012678	rab12	93	84.071	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.490	ENSSDUG00000008505	rab12	93	85.398	Seriola_dumerili
MGP_CAROLIEiJ_G0021839	Rab12	84	84.490	ENSSLDG00000022239	rab12	93	85.398	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021839	Rab12	84	91.057	ENSSPUG00000003222	RAB12	100	93.089	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021839	Rab12	84	84.146	ENSSPAG00000010822	rab12	93	85.022	Stegastes_partitus
MGP_CAROLIEiJ_G0021839	Rab12	84	96.721	ENSSSCG00000038026	RAB12	100	96.721	Sus_scrofa
MGP_CAROLIEiJ_G0021839	Rab12	78	96.916	ENSTGUG00000009889	RAB12	100	91.600	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021839	Rab12	84	82.449	ENSTRUG00000024455	rab12	93	83.186	Takifugu_rubripes
MGP_CAROLIEiJ_G0021839	Rab12	84	82.857	ENSTNIG00000014859	rab12	93	83.186	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021839	Rab12	76	98.198	ENSTTRG00000008711	RAB12	100	98.198	Tursiops_truncatus
MGP_CAROLIEiJ_G0021839	Rab12	84	96.311	ENSUAMG00000018092	RAB12	100	96.311	Ursus_americanus
MGP_CAROLIEiJ_G0021839	Rab12	75	98.630	ENSVVUG00000011748	RAB12	99	98.630	Vulpes_vulpes
MGP_CAROLIEiJ_G0021839	Rab12	86	85.938	ENSXETG00000004289	rab12	82	85.938	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021839	Rab12	84	81.781	ENSXCOG00000019310	rab12	93	83.772	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0021839	Rab12	84	82.186	ENSXMAG00000023617	rab12	93	83.772	Xiphophorus_maculatus