EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0021934 (Gene tree)
Gene ID: 110312584
Gene Symbol: Srbd1
Alias: D530025C17Rik
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 165070 bases
Position: chr17:81591913-81756982
Accession: 110312584
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0045776	S1	PF00575.23	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0045776	-	3539	XM_021186295	MGP_CAROLIEiJ_P0045776	981 (aa)	XP_021041954	-
MGP_CAROLIEiJ_T0045775	-	1464	-	MGP_CAROLIEiJ_P0045775	305 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0021934's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0021934's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSG00000068784	SRBD1	100	81.709	Homo_sapiens
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSAPOG00000005103	si:ch211-117n7.8	84	57.075	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0021934	Srbd1	100	82.294	ENSAMEG00000005993	SRBD1	100	82.294	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.224	ENSACIG00000009875	si:ch211-117n7.8	91	54.984	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.632	ENSAOCG00000024718	si:ch211-117n7.8	94	52.874	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.553	ENSAPEG00000002645	si:ch211-117n7.8	88	57.143	Amphiprion_percula
MGP_CAROLIEiJ_G0021934	Srbd1	99	59.211	ENSATEG00000010844	si:ch211-117n7.8	85	57.227	Anabas_testudineus
MGP_CAROLIEiJ_G0021934	Srbd1	99	78.387	ENSAPLG00000006313	SRBD1	96	71.266	Anas_platyrhynchos
MGP_CAROLIEiJ_G0021934	Srbd1	99	74.367	ENSACAG00000003811	-	100	74.763	Anolis_carolinensis
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.942	ENSANAG00000025573	SRBD1	100	82.010	Aotus_nancymaae
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSACLG00000024219	si:ch211-117n7.8	92	52.610	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0021934	Srbd1	99	61.513	ENSAMXG00000004294	SRBD1	94	56.277	Astyanax_mexicanus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSBTAG00000007508	SRBD1	97	80.522	Bos_taurus
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.387	ENSCJAG00000000727	SRBD1	100	81.307	Callithrix_jacchus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSCAFG00000002554	SRBD1	100	82.648	Canis_familiaris
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSCAFG00020026284	SRBD1	99	86.651	Canis_lupus_dingo
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSCHIG00000016535	SRBD1	98	80.422	Capra_hircus
MGP_CAROLIEiJ_G0021934	Srbd1	100	82.382	ENSTSYG00000012797	SRBD1	100	82.382	Carlito_syrichta
MGP_CAROLIEiJ_G0021934	Srbd1	88	81.784	ENSCAPG00000014166	-	100	82.609	Cavia_aperea
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.641	ENSCPOG00000004773	SRBD1	100	82.724	Cavia_porcellus
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.623	ENSCCAG00000025589	SRBD1	100	82.211	Cebus_capucinus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSCATG00000039530	SRBD1	100	82.412	Cercocebus_atys
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.294	ENSCLAG00000008623	SRBD1	100	83.283	Chinchilla_lanigera
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSCSAG00000013350	SRBD1	100	82.412	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0021934	Srbd1	87	90.196	ENSCHOG00000003805	SRBD1	87	90.196	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0021934	Srbd1	99	77.170	ENSCPBG00000005677	SRBD1	96	73.186	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0021934	Srbd1	99	42.812	ENSCING00000005950	-	99	43.710	Ciona_intestinalis
MGP_CAROLIEiJ_G0021934	Srbd1	99	41.118	ENSCSAVG00000000861	-	99	44.076	Ciona_savignyi
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSCANG00000016307	SRBD1	99	81.974	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	90.789	ENSCGRG00001000513	Srbd1	100	88.403	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0021934	Srbd1	99	90.789	ENSCGRG00000002283	Srbd1	100	88.403	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0021934	Srbd1	99	55.844	ENSCSEG00000000856	si:ch211-117n7.8	85	56.272	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.117	ENSCVAG00000020212	si:ch211-117n7.8	98	54.741	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0021934	Srbd1	52	55.625	ENSDARG00000079827	srbd1	99	56.051	Danio_rerio
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.345	ENSDNOG00000018686	SRBD1	100	81.300	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.948	ENSDORG00000010468	Srbd1	100	82.114	Dipodomys_ordii
MGP_CAROLIEiJ_G0021934	Srbd1	99	33.987	FBgn0051156	CG31156	79	37.594	Drosophila_melanogaster
MGP_CAROLIEiJ_G0021934	Srbd1	99	77.632	ENSETEG00000000739	SRBD1	91	80.470	Echinops_telfairi
MGP_CAROLIEiJ_G0021934	Srbd1	99	46.580	ENSEBUG00000008902	si:ch211-117n7.8	96	48.764	Eptatretus_burgeri
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.345	ENSEASG00005003132	SRBD1	97	86.624	Equus_asinus_asinus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.345	ENSECAG00000013865	SRBD1	98	82.831	Equus_caballus
MGP_CAROLIEiJ_G0021934	Srbd1	99	61.438	ENSELUG00000012592	si:ch211-117n7.8	91	55.879	Esox_lucius
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSFCAG00000005101	SRBD1	100	82.430	Felis_catus
MGP_CAROLIEiJ_G0021934	Srbd1	99	76.144	ENSFALG00000012966	SRBD1	96	69.588	Ficedula_albicollis
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.333	ENSFDAG00000016670	SRBD1	98	84.000	Fukomys_damarensis
MGP_CAROLIEiJ_G0021934	Srbd1	99	59.211	ENSFHEG00000019480	si:ch211-117n7.8	82	57.788	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0021934	Srbd1	99	55.263	ENSGMOG00000018010	-	100	54.023	Gadus_morhua
MGP_CAROLIEiJ_G0021934	Srbd1	99	77.670	ENSGALG00000009990	SRBD1	100	68.907	Gallus_gallus
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.958	ENSGAFG00000019664	si:ch211-117n7.8	84	56.992	Gambusia_affinis
MGP_CAROLIEiJ_G0021934	Srbd1	99	54.459	ENSGACG00000010794	si:ch211-117n7.8	100	59.520	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0021934	Srbd1	86	97.143	ENSGAGG00000006166	SRBD1	99	79.327	Gopherus_agassizii
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSGGOG00000005910	SRBD1	99	83.039	Gorilla_gorilla
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSHBUG00000013207	si:ch211-117n7.8	95	46.716	Haplochromis_burtoni
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.314	ENSHGLG00000018153	-	99	83.605	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.987	ENSHGLG00100015183	-	99	83.401	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0021934	Srbd1	52	53.797	ENSHCOG00000020901	-	99	53.797	Hippocampus_comes
MGP_CAROLIEiJ_G0021934	Srbd1	99	60.197	ENSIPUG00000009661	srbd1	85	60.000	Ictalurus_punctatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	87.908	ENSSTOG00000005898	SRBD1	100	84.248	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	86.275	ENSJJAG00000022244	Srbd1	100	78.905	Jaculus_jaculus
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.908	ENSKMAG00000003473	si:ch211-117n7.8	94	52.201	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.566	ENSLBEG00000027518	si:ch211-117n7.8	84	55.736	Labrus_bergylta
MGP_CAROLIEiJ_G0021934	Srbd1	99	72.669	ENSLACG00000009790	SRBD1	99	69.905	Latimeria_chalumnae
MGP_CAROLIEiJ_G0021934	Srbd1	99	66.230	ENSLOCG00000016360	si:ch211-117n7.8	96	58.709	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0021934	Srbd1	89	82.246	ENSLAFG00000004190	-	97	82.246	Loxodonta_africana
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSMFAG00000042026	SRBD1	100	82.412	Macaca_fascicularis
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSMMUG00000003490	SRBD1	100	82.312	Macaca_mulatta
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSMNEG00000034701	SRBD1	100	79.899	Macaca_nemestrina
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSMLEG00000000745	SRBD1	100	82.412	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.566	ENSMAMG00000021921	si:ch211-117n7.8	97	51.537	Mastacembelus_armatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSMZEG00005027369	si:ch211-117n7.8	92	52.610	Maylandia_zebra
MGP_CAROLIEiJ_G0021934	Srbd1	99	76.582	ENSMGAG00000010273	SRBD1	99	74.372	Meleagris_gallopavo
MGP_CAROLIEiJ_G0021934	Srbd1	99	90.461	ENSMAUG00000013916	Srbd1	95	88.930	Mesocricetus_auratus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.615	ENSMICG00000007835	SRBD1	100	82.430	Microcebus_murinus
MGP_CAROLIEiJ_G0021934	Srbd1	100	90.196	ENSMOCG00000018716	Srbd1	100	88.606	Microtus_ochrogaster
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.566	ENSMMOG00000007507	si:ch211-117n7.8	89	55.479	Mola_mola
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.678	ENSMALG00000001562	si:ch211-117n7.8	97	51.310	Monopterus_albus
MGP_CAROLIEiJ_G0021934	Srbd1	100	98.573	ENSMUSG00000024135	Srbd1	100	98.573	Mus_musculus
MGP_CAROLIEiJ_G0021934	Srbd1	100	95.923	MGP_PahariEiJ_G0020924	Srbd1	100	95.923	Mus_pahari
MGP_CAROLIEiJ_G0021934	Srbd1	100	98.777	MGP_SPRETEiJ_G0022850	Srbd1	100	98.777	Mus_spretus
MGP_CAROLIEiJ_G0021934	Srbd1	99	82.109	ENSMLUG00000007039	SRBD1	100	80.341	Myotis_lucifugus
MGP_CAROLIEiJ_G0021934	Srbd1	99	87.622	ENSNGAG00000011893	Srbd1	100	82.132	Nannospalax_galili
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.553	ENSNBRG00000012873	si:ch211-117n7.8	91	54.060	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSNLEG00000016877	SRBD1	100	82.010	Nomascus_leucogenys
MGP_CAROLIEiJ_G0021934	Srbd1	100	85.342	ENSODEG00000012095	SRBD1	100	81.929	Octodon_degus
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSONIG00000000945	si:ch211-117n7.8	100	57.623	Oreochromis_niloticus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.665	ENSOCUG00000015385	SRBD1	100	83.468	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0021934	Srbd1	99	50.489	ENSORLG00000004427	si:ch211-117n7.8	83	53.140	Oryzias_latipes
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.224	ENSORLG00020012792	si:ch211-117n7.8	84	55.828	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.632	ENSORLG00015018598	si:ch211-117n7.8	84	55.814	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.908	ENSOMEG00000012229	si:ch211-117n7.8	93	51.782	Oryzias_melastigma
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSOGAG00000001076	SRBD1	100	77.610	Otolemur_garnettii
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.387	ENSOARG00000005958	SRBD1	100	76.237	Ovis_aries
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSPPAG00000038442	SRBD1	100	82.111	Pan_paniscus
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSPPRG00000003449	SRBD1	100	82.412	Panthera_pardus
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSPTIG00000012495	SRBD1	100	82.513	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSPTRG00000011889	SRBD1	100	82.111	Pan_troglodytes
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSPANG00000008063	SRBD1	100	82.111	Papio_anubis
MGP_CAROLIEiJ_G0021934	Srbd1	99	60.131	ENSPKIG00000021973	si:ch211-117n7.8	87	59.527	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0021934	Srbd1	99	79.100	ENSPSIG00000008992	SRBD1	100	71.903	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.352	ENSPMGG00000013348	si:ch211-117n7.8	98	51.379	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0021934	Srbd1	100	91.475	ENSPEMG00000020684	Srbd1	100	87.276	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.306	ENSPFOG00000010650	si:ch211-117n7.8	83	57.109	Poecilia_formosa
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.306	ENSPLAG00000002141	si:ch211-117n7.8	84	57.227	Poecilia_latipinna
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.632	ENSPMEG00000018537	si:ch211-117n7.8	83	57.227	Poecilia_mexicana
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.224	ENSPREG00000003258	si:ch211-117n7.8	86	57.109	Poecilia_reticulata
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.304	ENSPPYG00000012444	SRBD1	99	72.538	Pongo_abelii
MGP_CAROLIEiJ_G0021934	Srbd1	91	83.274	ENSPCAG00000005629	SRBD1	85	79.384	Procavia_capensis
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.295	ENSPCOG00000017669	SRBD1	100	70.311	Propithecus_coquereli
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSPVAG00000001782	SRBD1	100	71.960	Pteropus_vampyrus
MGP_CAROLIEiJ_G0021934	Srbd1	99	58.882	ENSPNYG00000000508	si:ch211-117n7.8	96	50.474	Pundamilia_nyererei
MGP_CAROLIEiJ_G0021934	Srbd1	99	61.184	ENSPNAG00000013492	SRBD1	93	57.249	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0021934	Srbd1	99	94.737	ENSRNOG00000014720	Srbd1	99	93.381	Rattus_norvegicus
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSRBIG00000033486	SRBD1	99	82.075	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.706	ENSRROG00000041599	SRBD1	99	82.075	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0021934	Srbd1	99	85.623	ENSSBOG00000024982	SRBD1	100	81.809	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.895	ENSSFOG00015001128	si:ch211-117n7.8	97	56.952	Scleropages_formosus
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.329	ENSSMAG00000018256	si:ch211-117n7.8	83	56.840	Scophthalmus_maximus
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.352	ENSSLDG00000023189	si:ch211-117n7.8	83	56.169	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0021934	Srbd1	99	80.844	ENSSARG00000009740	SRBD1	100	74.949	Sorex_araneus
MGP_CAROLIEiJ_G0021934	Srbd1	99	74.267	ENSSPUG00000010475	SRBD1	99	73.874	Sphenodon_punctatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.566	ENSSPAG00000008092	-	99	49.008	Stegastes_partitus
MGP_CAROLIEiJ_G0021934	Srbd1	63	55.000	ENSSPAG00000014206	-	98	55.000	Stegastes_partitus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.984	ENSSSCG00000008445	SRBD1	98	81.928	Sus_scrofa
MGP_CAROLIEiJ_G0021934	Srbd1	99	75.000	ENSTGUG00000003878	SRBD1	100	75.904	Taeniopygia_guttata
MGP_CAROLIEiJ_G0021934	Srbd1	99	56.908	ENSTRUG00000007080	si:ch211-117n7.8	93	56.890	Takifugu_rubripes
MGP_CAROLIEiJ_G0021934	Srbd1	99	57.051	ENSTNIG00000007464	si:ch211-117n7.8	97	50.754	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0021934	Srbd1	82	95.745	ENSTBEG00000004556	SRBD1	82	95.745	Tupaia_belangeri
MGP_CAROLIEiJ_G0021934	Srbd1	80	100.000	ENSTTRG00000011871	SRBD1	94	81.337	Tursiops_truncatus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSUAMG00000008126	SRBD1	100	80.671	Ursus_americanus
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSUMAG00000012902	SRBD1	98	82.229	Ursus_maritimus
MGP_CAROLIEiJ_G0021934	Srbd1	99	83.067	ENSVPAG00000006825	SRBD1	99	84.684	Vicugna_pacos
MGP_CAROLIEiJ_G0021934	Srbd1	99	84.026	ENSVVUG00000005389	SRBD1	100	82.028	Vulpes_vulpes
MGP_CAROLIEiJ_G0021934	Srbd1	99	62.215	ENSXETG00000002760	srbd1	100	51.691	Xenopus_tropicalis
MGP_CAROLIEiJ_G0021934	Srbd1	99	59.283	ENSXMAG00000016861	si:ch211-117n7.8	84	57.109	Xiphophorus_maculatus