EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0022841 (Gene tree)
Gene ID
110285425
Gene Symbol
Smarca2
Alias
2610209L14Rik|Snf2l2|brm
Full Name
SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 2
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Plus strand
Length
170711 bases
Position
chr19:23686904-23857614
Accession
110285425
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0048435ResIIIPF04851.153.8e-0811
MGP_CAROLIEiJ_P0048436ResIIIPF04851.153.8e-0811
MGP_CAROLIEiJ_P0048439ResIIIPF04851.152e-0611
MGP_CAROLIEiJ_P0048439BRKPF07533.164.3e-1711
MGP_CAROLIEiJ_P0048436BRKPF07533.164.3e-1711
MGP_CAROLIEiJ_P0048435BRKPF07533.164.4e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0048446-942-MGP_CAROLIEiJ_P0048446254 (aa)--
MGP_CAROLIEiJ_T0048447-788-MGP_CAROLIEiJ_P0048447224 (aa)--
MGP_CAROLIEiJ_T0048444-426--- (aa)--
MGP_CAROLIEiJ_T0048445-929-MGP_CAROLIEiJ_P0048445254 (aa)--
MGP_CAROLIEiJ_T0048442-1584--- (aa)--
MGP_CAROLIEiJ_T0048443-866--- (aa)--
MGP_CAROLIEiJ_T0048440-649-MGP_CAROLIEiJ_P0048440174 (aa)--
MGP_CAROLIEiJ_T0048441-665--- (aa)--
MGP_CAROLIEiJ_T0048452-1463-MGP_CAROLIEiJ_P0048452113 (aa)--
MGP_CAROLIEiJ_T0048448-879-MGP_CAROLIEiJ_P0048448276 (aa)-UPI000A312ADD
MGP_CAROLIEiJ_T0048449-1861-MGP_CAROLIEiJ_P0048449236 (aa)-UPI000A3048DB
MGP_CAROLIEiJ_T0048437-5919-MGP_CAROLIEiJ_P00484371511 (aa)XP_021007244UPI000A319286
MGP_CAROLIEiJ_T0048436-5868XM_021151582MGP_CAROLIEiJ_P00484361602 (aa)XP_021007241UPI000A31A8A5
MGP_CAROLIEiJ_T0048435-5864XM_021151584MGP_CAROLIEiJ_P00484351584 (aa)XP_021007243UPI000A31ACB3
MGP_CAROLIEiJ_T0048454-735-MGP_CAROLIEiJ_P0048454119 (aa)-UPI00000E78BF
MGP_CAROLIEiJ_T0048451-492-MGP_CAROLIEiJ_P004845183 (aa)--
MGP_CAROLIEiJ_T0048439-4581-MGP_CAROLIEiJ_P00484391526 (aa)--
MGP_CAROLIEiJ_T0048438-5997-MGP_CAROLIEiJ_P00484381593 (aa)--
MGP_CAROLIEiJ_T0048453-971-MGP_CAROLIEiJ_P0048453119 (aa)-UPI00000E78BF
MGP_CAROLIEiJ_T0048450-835-MGP_CAROLIEiJ_P0048450235 (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0022841's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0022841's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_CAROLIEiJ_G0022841Smarca28181.986MGP_CAROLIEiJ_G0031879Smarca49379.005
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0022841Smarca210096.861ENSG00000080503SMARCA210099.329Homo_sapiens
MGP_CAROLIEiJ_G0022841Smarca210079.675ENSAPOG00000002641SMARCA29778.423Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0022841Smarca29489.182ENSAMEG00000012325SMARCA210098.670Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0022841Smarca210078.253ENSACIG00000015607SMARCA29779.159Amphilophus_citrinellus
MGP_CAROLIEiJ_G0022841Smarca210079.229ENSAOCG00000009647-9679.739Amphiprion_ocellaris
MGP_CAROLIEiJ_G0022841Smarca210079.737ENSAPEG00000007646SMARCA29679.209Amphiprion_percula
MGP_CAROLIEiJ_G0022841Smarca29980.889ENSATEG00000006916SMARCA29580.206Anabas_testudineus
MGP_CAROLIEiJ_G0022841Smarca29887.517ENSAPLG00000013873SMARCA28997.904Anas_platyrhynchos
MGP_CAROLIEiJ_G0022841Smarca210088.875ENSACAG00000002423SMARCA28492.618Anolis_carolinensis
MGP_CAROLIEiJ_G0022841Smarca210096.547ENSANAG00000026498SMARCA210096.504Aotus_nancymaae
MGP_CAROLIEiJ_G0022841Smarca210079.937ENSACLG00000004248SMARCA29780.450Astatotilapia_calliptera
MGP_CAROLIEiJ_G0022841Smarca210080.767ENSAMXG00000012404smarca29780.740Astyanax_mexicanus
MGP_CAROLIEiJ_G0022841Smarca210095.391ENSBTAG00000007494SMARCA210095.391Bos_taurus
MGP_CAROLIEiJ_G0022841Smarca29996.819ENSCJAG00000010710SMARCA29996.745Callithrix_jacchus
MGP_CAROLIEiJ_G0022841Smarca210095.794ENSCAFG00000002013SMARCA210095.770Canis_familiaris
MGP_CAROLIEiJ_G0022841Smarca27794.495ENSCAFG00020026802SMARCA29894.495Canis_lupus_dingo
MGP_CAROLIEiJ_G0022841Smarca210095.480ENSCHIG00000025863SMARCA210095.443Capra_hircus
MGP_CAROLIEiJ_G0022841Smarca210096.869ENSTSYG00000003858SMARCA210096.824Carlito_syrichta
MGP_CAROLIEiJ_G0022841Smarca29992.143ENSCAPG00000002890SMARCA29992.604Cavia_aperea
MGP_CAROLIEiJ_G0022841Smarca210095.896ENSCPOG00000005475SMARCA210095.896Cavia_porcellus
MGP_CAROLIEiJ_G0022841Smarca210096.610ENSCCAG00000030636SMARCA210096.591Cebus_capucinus
MGP_CAROLIEiJ_G0022841Smarca210096.091ENSCATG00000031470SMARCA210096.091Cercocebus_atys
MGP_CAROLIEiJ_G0022841Smarca210096.465ENSCLAG00000014484SMARCA210096.465Chinchilla_lanigera
MGP_CAROLIEiJ_G0022841Smarca29496.491ENSCSAG00000008650SMARCA29996.491Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0022841Smarca28790.411ENSCHOG00000004316SMARCA28790.411Choloepus_hoffmanni
MGP_CAROLIEiJ_G0022841Smarca210090.245ENSCPBG00000025463SMARCA210094.970Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0022841Smarca210096.610ENSCANG00000039597SMARCA210096.567Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0022841Smarca210090.137ENSCGRG00001002323Smarca210090.081Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0022841Smarca29976.553ENSCSEG00000019311SMARCA29676.948Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0022841Smarca28978.293ENSCVAG00000016571SMARCA27784.952Cyprinodon_variegatus
MGP_CAROLIEiJ_G0022841Smarca210081.149ENSDARG00000008904smarca28486.384Danio_rerio
MGP_CAROLIEiJ_G0022841Smarca210094.448ENSDNOG00000006402SMARCA210094.007Dasypus_novemcinctus
MGP_CAROLIEiJ_G0022841Smarca210096.567ENSDORG00000014832Smarca210096.567Dipodomys_ordii
MGP_CAROLIEiJ_G0022841Smarca27853.236FBgn0000212brm7355.957Drosophila_melanogaster
MGP_CAROLIEiJ_G0022841Smarca29371.499ENSEBUG00000011442-8175.382Eptatretus_burgeri
MGP_CAROLIEiJ_G0022841Smarca27964.984ENSEBUG00000002449-9065.187Eptatretus_burgeri
MGP_CAROLIEiJ_G0022841Smarca210095.644ENSEASG00005010312SMARCA210095.644Equus_asinus_asinus
MGP_CAROLIEiJ_G0022841Smarca26697.222ENSEEUG00000015540-6997.222Erinaceus_europaeus
MGP_CAROLIEiJ_G0022841Smarca29378.818ENSELUG00000010318smarca29478.185Esox_lucius
MGP_CAROLIEiJ_G0022841Smarca210095.417ENSFCAG00000001568SMARCA210095.391Felis_catus
MGP_CAROLIEiJ_G0022841Smarca210090.680ENSFALG00000010416SMARCA29095.427Ficedula_albicollis
MGP_CAROLIEiJ_G0022841Smarca210094.645ENSFDAG00000010502SMARCA210094.707Fukomys_damarensis
MGP_CAROLIEiJ_G0022841Smarca29980.314ENSFHEG00000021250SMARCA29681.048Fundulus_heteroclitus
MGP_CAROLIEiJ_G0022841Smarca29877.293ENSGMOG00000014229SMARCA29777.232Gadus_morhua
MGP_CAROLIEiJ_G0022841Smarca210090.915ENSGALG00000010164SMARCA210090.852Gallus_gallus
MGP_CAROLIEiJ_G0022841Smarca29576.187ENSGAFG00000001164SMARCA29376.423Gambusia_affinis
MGP_CAROLIEiJ_G0022841Smarca29979.148ENSGACG00000014488SMARCA28283.888Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0022841Smarca210090.371ENSGAGG00000024412SMARCA28394.970Gopherus_agassizii
MGP_CAROLIEiJ_G0022841Smarca29599.033ENSGGOG00000000513SMARCA210094.486Gorilla_gorilla
MGP_CAROLIEiJ_G0022841Smarca210079.476ENSHBUG00000006691SMARCA29580.612Haplochromis_burtoni
MGP_CAROLIEiJ_G0022841Smarca29996.503ENSHGLG00000005215SMARCA29996.503Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0022841Smarca210095.076ENSHGLG00100010496SMARCA210095.076Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0022841Smarca28186.337ENSHCOG00000015348-8886.535Hippocampus_comes
MGP_CAROLIEiJ_G0022841Smarca210079.926ENSIPUG00000011060smarca29679.936Ictalurus_punctatus
MGP_CAROLIEiJ_G0022841Smarca210096.941ENSSTOG00000006812SMARCA210096.941Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0022841Smarca210096.780ENSJJAG00000010867Smarca210096.780Jaculus_jaculus
MGP_CAROLIEiJ_G0022841Smarca29980.227ENSKMAG00000015844-9680.620Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0022841Smarca25081.188ENSLACG00000000270SMARCA28879.775Latimeria_chalumnae
MGP_CAROLIEiJ_G0022841Smarca29883.206ENSLOCG00000011499smarca28188.574Lepisosteus_oculatus
MGP_CAROLIEiJ_G0022841Smarca210094.069ENSLAFG00000014061SMARCA210093.325Loxodonta_africana
MGP_CAROLIEiJ_G0022841Smarca210095.229ENSMFAG00000003814SMARCA210095.194Macaca_fascicularis
MGP_CAROLIEiJ_G0022841Smarca210096.610ENSMMUG00000015279SMARCA210096.567Macaca_mulatta
MGP_CAROLIEiJ_G0022841Smarca210095.262ENSMNEG00000041069SMARCA210095.511Macaca_nemestrina
MGP_CAROLIEiJ_G0022841Smarca210094.007ENSMLEG00000027418SMARCA210094.007Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0022841Smarca210081.032ENSMAMG00000003056SMARCA29781.114Mastacembelus_armatus
MGP_CAROLIEiJ_G0022841Smarca210079.975ENSMZEG00005020709SMARCA29580.769Maylandia_zebra
MGP_CAROLIEiJ_G0022841Smarca28077.822ENSMGAG00000005160-10077.689Meleagris_gallopavo
MGP_CAROLIEiJ_G0022841Smarca210095.920ENSMICG00000005162SMARCA210095.818Microcebus_murinus
MGP_CAROLIEiJ_G0022841Smarca210098.044ENSMOCG00000001611Smarca210098.044Microtus_ochrogaster
MGP_CAROLIEiJ_G0022841Smarca29977.694ENSMMOG00000014196SMARCA29678.869Mola_mola
MGP_CAROLIEiJ_G0022841Smarca210090.718ENSMODG00000003578SMARCA210090.965Monodelphis_domestica
MGP_CAROLIEiJ_G0022841Smarca29980.140ENSMALG00000009611SMARCA29680.418Monopterus_albus
MGP_CAROLIEiJ_G0022841Smarca210099.684ENSMUSG00000024921Smarca210099.684Mus_musculus
MGP_CAROLIEiJ_G0022841Smarca210099.306MGP_PahariEiJ_G0014334Smarca210099.306Mus_pahari
MGP_CAROLIEiJ_G0022841Smarca210099.747MGP_SPRETEiJ_G0023759Smarca210099.747Mus_spretus
MGP_CAROLIEiJ_G0022841Smarca28098.673ENSMPUG00000005171SMARCA29498.673Mustela_putorius_furo
MGP_CAROLIEiJ_G0022841Smarca29990.327ENSMLUG00000002342SMARCA28293.257Myotis_lucifugus
MGP_CAROLIEiJ_G0022841Smarca29995.815ENSNGAG00000000108Smarca29995.815Nannospalax_galili
MGP_CAROLIEiJ_G0022841Smarca29666.516ENSNBRG00000017998SMARCA29483.085Neolamprologus_brichardi
MGP_CAROLIEiJ_G0022841Smarca210093.883ENSNLEG00000008575SMARCA210093.883Nomascus_leucogenys
MGP_CAROLIEiJ_G0022841Smarca210084.082ENSMEUG00000009812SMARCA210084.332Notamacropus_eugenii
MGP_CAROLIEiJ_G0022841Smarca29897.872ENSOPRG00000013474SMARCA29497.872Ochotona_princeps
MGP_CAROLIEiJ_G0022841Smarca29995.304ENSODEG00000005452SMARCA29995.295Octodon_degus
MGP_CAROLIEiJ_G0022841Smarca29980.050ENSONIG00000014163SMARCA28086.682Oreochromis_niloticus
MGP_CAROLIEiJ_G0022841Smarca25194.352ENSOANG00000008299-9598.113Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0022841Smarca210095.652ENSOCUG00000006320SMARCA210095.778Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0022841Smarca210079.513ENSORLG00000020820SMARCA29777.874Oryzias_latipes
MGP_CAROLIEiJ_G0022841Smarca210079.513ENSORLG00015006289SMARCA29590.872Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0022841Smarca29980.140ENSOMEG00000009736-9679.974Oryzias_melastigma
MGP_CAROLIEiJ_G0022841Smarca29992.002ENSOGAG00000017053SMARCA29993.041Otolemur_garnettii
MGP_CAROLIEiJ_G0022841Smarca210093.880ENSOARG00000013265SMARCA210093.817Ovis_aries
MGP_CAROLIEiJ_G0022841Smarca210092.509ENSPPAG00000038717SMARCA210095.135Pan_paniscus
MGP_CAROLIEiJ_G0022841Smarca210095.480ENSPPRG00000001879SMARCA210095.455Panthera_pardus
MGP_CAROLIEiJ_G0022841Smarca210095.194ENSPTRG00000051168SMARCA29896.315Pan_troglodytes
MGP_CAROLIEiJ_G0022841Smarca210089.421ENSPANG00000025121SMARCA210089.533Papio_anubis
MGP_CAROLIEiJ_G0022841Smarca210081.767ENSPKIG00000018469-9781.359Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0022841Smarca210090.164ENSPSIG00000006284SMARCA29985.995Pelodiscus_sinensis
MGP_CAROLIEiJ_G0022841Smarca29972.624ENSPMGG00000013696-9674.676Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0022841Smarca210097.878ENSPEMG00000019821Smarca210097.878Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0022841Smarca29472.564ENSPMAG00000005337-9375.976Petromyzon_marinus
MGP_CAROLIEiJ_G0022841Smarca210092.172ENSPCIG00000015658SMARCA210092.424Phascolarctos_cinereus
MGP_CAROLIEiJ_G0022841Smarca29979.912ENSPFOG00000001856SMARCA29679.716Poecilia_formosa
MGP_CAROLIEiJ_G0022841Smarca29979.862ENSPLAG00000017829SMARCA27984.586Poecilia_latipinna
MGP_CAROLIEiJ_G0022841Smarca29979.912ENSPMEG00000001815-8184.586Poecilia_mexicana
MGP_CAROLIEiJ_G0022841Smarca29980.050ENSPREG00000013800SMARCA29577.273Poecilia_reticulata
MGP_CAROLIEiJ_G0022841Smarca210095.960ENSPPYG00000019258SMARCA210095.960Pongo_abelii
MGP_CAROLIEiJ_G0022841Smarca27983.201ENSPCAG00000016969SMARCA27883.774Procavia_capensis
MGP_CAROLIEiJ_G0022841Smarca210094.011ENSPCOG00000025709SMARCA210093.820Propithecus_coquereli
MGP_CAROLIEiJ_G0022841Smarca29196.842ENSPVAG00000000901SMARCA29596.842Pteropus_vampyrus
MGP_CAROLIEiJ_G0022841Smarca210076.170ENSPNYG00000004533SMARCA28380.909Pundamilia_nyererei
MGP_CAROLIEiJ_G0022841Smarca29982.226ENSPNAG00000014635smarca29581.314Pygocentrus_nattereri
MGP_CAROLIEiJ_G0022841Smarca210098.369ENSRNOG00000011931Smarca210098.316Rattus_norvegicus
MGP_CAROLIEiJ_G0022841Smarca210094.571ENSRBIG00000038618SMARCA210094.571Rhinopithecus_bieti
MGP_CAROLIEiJ_G0022841Smarca210095.069ENSRROG00000019271SMARCA29996.291Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0022841Smarca210092.759ENSSBOG00000034827SMARCA29892.958Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0022841Smarca210090.397ENSSHAG00000007884SMARCA210090.347Sarcophilus_harrisii
MGP_CAROLIEiJ_G0022841Smarca29782.389ENSSFOG00015014870SMARCA29782.505Scleropages_formosus
MGP_CAROLIEiJ_G0022841Smarca210079.084ENSSMAG00000013707SMARCA29878.904Scophthalmus_maximus
MGP_CAROLIEiJ_G0022841Smarca29979.596ENSSDUG00000008852-9580.687Seriola_dumerili
MGP_CAROLIEiJ_G0022841Smarca29979.836ENSSLDG00000025449SMARCA29680.545Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0022841Smarca29695.977ENSSARG00000007888SMARCA29496.316Sorex_araneus
MGP_CAROLIEiJ_G0022841Smarca29685.434ENSSPUG00000001629SMARCA28789.363Sphenodon_punctatus
MGP_CAROLIEiJ_G0022841Smarca210079.551ENSSPAG00000020091-9579.635Stegastes_partitus
MGP_CAROLIEiJ_G0022841Smarca210095.543ENSSSCG00000005232SMARCA210095.194Sus_scrofa
MGP_CAROLIEiJ_G0022841Smarca29890.316ENSTGUG00000005460SMARCA28394.817Taeniopygia_guttata
MGP_CAROLIEiJ_G0022841Smarca29980.101ENSTRUG00000015619SMARCA29678.139Takifugu_rubripes
MGP_CAROLIEiJ_G0022841Smarca26899.297ENSTBEG00000008767SMARCA274100.000Tupaia_belangeri
MGP_CAROLIEiJ_G0022841Smarca29594.342ENSTTRG00000002033SMARCA29594.539Tursiops_truncatus
MGP_CAROLIEiJ_G0022841Smarca29591.678ENSUAMG00000024701SMARCA29993.585Ursus_americanus
MGP_CAROLIEiJ_G0022841Smarca29286.512ENSVPAG00000001204SMARCA210086.512Vicugna_pacos
MGP_CAROLIEiJ_G0022841Smarca27595.496ENSVVUG00000004598SMARCA29995.496Vulpes_vulpes
MGP_CAROLIEiJ_G0022841Smarca210083.168ENSXETG00000015299smarca28287.377Xenopus_tropicalis
MGP_CAROLIEiJ_G0022841Smarca29378.531ENSXCOG00000011073SMARCA29779.092Xiphophorus_couchianus
MGP_CAROLIEiJ_G0022841Smarca29979.812ENSXMAG00000015611SMARCA29679.987Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us