EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0022873 (Gene tree)
Gene ID: 110285276
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 71448 bases
Position: chr19:28883884-28955331
Accession: 110285276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0048565	DND1_DSRM	PF14709.7	1.8e-25	1	1
MGP_CAROLIEiJ_P0048565	RRM_1	PF00076.22	2.2e-39	1	3
MGP_CAROLIEiJ_P0048565	RRM_1	PF00076.22	2.2e-39	2	3
MGP_CAROLIEiJ_P0048565	RRM_1	PF00076.22	2.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0048565	-	3836	-	MGP_CAROLIEiJ_P0048565	595 (aa)	XP_021006976	UPI0000434F26
MGP_CAROLIEiJ_T0048566	-	1764	-	MGP_CAROLIEiJ_P0048566	587 (aa)	XP_021006977	UPI00001C621A

Gene Model

Click here to download MGP_CAROLIEiJ_G0022873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0022873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0022873	A1cf	75	57.602	MGP_CAROLIEiJ_G0027258	Rbm47	89	67.376
MGP_CAROLIEiJ_G0022873	A1cf	88	70.701	MGP_CAROLIEiJ_G0025101	Rbm46	88	70.701

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0022873	A1cf	100	93.613	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
MGP_CAROLIEiJ_G0022873	A1cf	100	73.277	ENSAPOG00000008259	a1cf	100	73.109	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.933	ENSAMEG00000000523	A1CF	100	92.269	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0022873	A1cf	100	75.372	ENSACIG00000008632	a1cf	100	76.694	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0022873	A1cf	100	73.964	ENSAOCG00000023744	a1cf	93	85.030	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0022873	A1cf	100	73.977	ENSAPEG00000009537	a1cf	100	74.632	Amphiprion_percula
MGP_CAROLIEiJ_G0022873	A1cf	100	75.743	ENSATEG00000013720	a1cf	100	77.063	Anabas_testudineus
MGP_CAROLIEiJ_G0022873	A1cf	100	86.577	ENSAPLG00000002964	A1CF	100	86.409	Anas_platyrhynchos
MGP_CAROLIEiJ_G0022873	A1cf	100	83.333	ENSACAG00000015269	A1CF	100	82.653	Anolis_carolinensis
MGP_CAROLIEiJ_G0022873	A1cf	100	93.867	ENSANAG00000019974	A1CF	100	93.526	Aotus_nancymaae
MGP_CAROLIEiJ_G0022873	A1cf	100	73.344	ENSACLG00000017428	a1cf	100	74.834	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0022873	A1cf	100	72.893	ENSAMXG00000018180	a1cf	100	73.223	Astyanax_mexicanus
MGP_CAROLIEiJ_G0022873	A1cf	100	92.845	ENSBTAG00000021195	A1CF	100	93.680	Bos_taurus
MGP_CAROLIEiJ_G0022873	A1cf	100	93.950	ENSCJAG00000005045	A1CF	100	93.613	Callithrix_jacchus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.092	ENSCAFG00000015581	A1CF	100	92.101	Canis_familiaris
MGP_CAROLIEiJ_G0022873	A1cf	100	91.092	ENSCAFG00020026421	A1CF	100	92.101	Canis_lupus_dingo
MGP_CAROLIEiJ_G0022873	A1cf	100	92.101	ENSCHIG00000020411	A1CF	100	92.101	Capra_hircus
MGP_CAROLIEiJ_G0022873	A1cf	95	91.667	ENSTSYG00000001755	A1CF	100	92.238	Carlito_syrichta
MGP_CAROLIEiJ_G0022873	A1cf	100	82.353	ENSCAPG00000017386	A1CF	100	82.353	Cavia_aperea
MGP_CAROLIEiJ_G0022873	A1cf	100	92.605	ENSCPOG00000009807	A1CF	100	92.437	Cavia_porcellus
MGP_CAROLIEiJ_G0022873	A1cf	100	93.782	ENSCCAG00000018168	A1CF	100	93.445	Cebus_capucinus
MGP_CAROLIEiJ_G0022873	A1cf	100	93.697	ENSCATG00000043715	A1CF	100	93.186	Cercocebus_atys
MGP_CAROLIEiJ_G0022873	A1cf	100	93.289	ENSCLAG00000010424	A1CF	100	93.289	Chinchilla_lanigera
MGP_CAROLIEiJ_G0022873	A1cf	100	93.782	ENSCSAG00000007032	A1CF	100	93.277	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0022873	A1cf	98	87.801	ENSCHOG00000009089	A1CF	98	87.973	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0022873	A1cf	100	86.577	ENSCPBG00000026464	A1CF	100	86.409	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0022873	A1cf	100	93.782	ENSCANG00000038032	A1CF	100	93.277	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0022873	A1cf	100	95.966	ENSCGRG00001017413	A1cf	100	95.966	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0022873	A1cf	100	95.126	ENSCGRG00000017332	A1cf	100	95.126	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0022873	A1cf	100	74.295	ENSCSEG00000002361	a1cf	100	75.622	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0022873	A1cf	100	75.083	ENSCVAG00000010520	a1cf	100	76.568	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0022873	A1cf	100	77.740	ENSDARG00000002968	a1cf	100	79.258	Danio_rerio
MGP_CAROLIEiJ_G0022873	A1cf	100	91.765	ENSDNOG00000002829	A1CF	100	91.765	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0022873	A1cf	82	91.304	ENSETEG00000012527	A1CF	81	91.304	Echinops_telfairi
MGP_CAROLIEiJ_G0022873	A1cf	100	93.132	ENSEASG00005012924	A1CF	100	93.467	Equus_asinus_asinus
MGP_CAROLIEiJ_G0022873	A1cf	100	92.630	ENSECAG00000010424	A1CF	100	92.965	Equus_caballus
MGP_CAROLIEiJ_G0022873	A1cf	78	79.739	ENSEEUG00000000013	A1CF	97	80.856	Erinaceus_europaeus
MGP_CAROLIEiJ_G0022873	A1cf	100	77.704	ENSELUG00000003159	a1cf	100	78.536	Esox_lucius
MGP_CAROLIEiJ_G0022873	A1cf	100	90.460	ENSFCAG00000011179	A1CF	100	90.801	Felis_catus
MGP_CAROLIEiJ_G0022873	A1cf	100	85.544	ENSFALG00000013183	A1CF	100	85.374	Ficedula_albicollis
MGP_CAROLIEiJ_G0022873	A1cf	100	92.504	ENSFDAG00000019371	A1CF	100	92.504	Fukomys_damarensis
MGP_CAROLIEiJ_G0022873	A1cf	100	69.967	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0022873	A1cf	100	71.452	ENSGMOG00000018943	a1cf	100	71.452	Gadus_morhua
MGP_CAROLIEiJ_G0022873	A1cf	95	85.310	ENSGALG00000003765	A1CF	97	85.133	Gallus_gallus
MGP_CAROLIEiJ_G0022873	A1cf	100	70.432	ENSGAFG00000014868	a1cf	100	71.429	Gambusia_affinis
MGP_CAROLIEiJ_G0022873	A1cf	100	73.727	ENSGACG00000010241	a1cf	100	73.727	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0022873	A1cf	94	86.146	ENSGAGG00000016508	A1CF	97	85.968	Gopherus_agassizii
MGP_CAROLIEiJ_G0022873	A1cf	100	93.445	ENSGGOG00000009670	A1CF	100	93.445	Gorilla_gorilla
MGP_CAROLIEiJ_G0022873	A1cf	100	74.215	ENSHBUG00000021959	a1cf	100	76.198	Haplochromis_burtoni
MGP_CAROLIEiJ_G0022873	A1cf	100	93.277	ENSHGLG00000008955	A1CF	100	93.277	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0022873	A1cf	100	92.605	ENSHGLG00100000518	A1CF	100	92.605	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0022873	A1cf	100	70.455	ENSHCOG00000017669	a1cf	100	72.403	Hippocampus_comes
MGP_CAROLIEiJ_G0022873	A1cf	89	82.090	ENSIPUG00000010367	a1cf	96	82.090	Ictalurus_punctatus
MGP_CAROLIEiJ_G0022873	A1cf	100	75.772	ENSKMAG00000006568	a1cf	100	76.585	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0022873	A1cf	99	74.220	ENSLBEG00000020994	a1cf	98	75.534	Labrus_bergylta
MGP_CAROLIEiJ_G0022873	A1cf	100	81.049	ENSLACG00000008061	A1CF	100	80.711	Latimeria_chalumnae
MGP_CAROLIEiJ_G0022873	A1cf	100	80.500	ENSLOCG00000006302	a1cf	100	80.500	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0022873	A1cf	100	92.101	ENSLAFG00000015462	A1CF	100	92.101	Loxodonta_africana
MGP_CAROLIEiJ_G0022873	A1cf	100	93.697	ENSMFAG00000035948	A1CF	100	93.186	Macaca_fascicularis
MGP_CAROLIEiJ_G0022873	A1cf	100	93.697	ENSMMUG00000007077	A1CF	100	93.186	Macaca_mulatta
MGP_CAROLIEiJ_G0022873	A1cf	100	93.526	ENSMNEG00000031454	A1CF	100	93.015	Macaca_nemestrina
MGP_CAROLIEiJ_G0022873	A1cf	100	93.782	ENSMLEG00000037223	A1CF	100	93.277	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0022873	A1cf	100	73.300	ENSMAMG00000010402	a1cf	100	75.497	Mastacembelus_armatus
MGP_CAROLIEiJ_G0022873	A1cf	100	75.000	ENSMZEG00005013245	a1cf	100	76.000	Maylandia_zebra
MGP_CAROLIEiJ_G0022873	A1cf	100	85.595	ENSMGAG00000001507	A1CF	100	85.427	Meleagris_gallopavo
MGP_CAROLIEiJ_G0022873	A1cf	100	95.294	ENSMAUG00000007422	A1cf	100	95.294	Mesocricetus_auratus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.864	ENSMICG00000003377	A1CF	100	92.203	Microcebus_murinus
MGP_CAROLIEiJ_G0022873	A1cf	100	95.630	ENSMOCG00000021536	A1cf	100	95.630	Microtus_ochrogaster
MGP_CAROLIEiJ_G0022873	A1cf	100	67.496	ENSMMOG00000009422	a1cf	100	68.823	Mola_mola
MGP_CAROLIEiJ_G0022873	A1cf	92	88.868	ENSMODG00000016478	A1CF	97	90.595	Monodelphis_domestica
MGP_CAROLIEiJ_G0022873	A1cf	100	72.973	ENSMALG00000012992	a1cf	100	72.973	Monopterus_albus
MGP_CAROLIEiJ_G0022873	A1cf	100	100.000	ENSMUSG00000052595	A1cf	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0022873	A1cf	100	98.824	MGP_PahariEiJ_G0014366	A1cf	100	98.824	Mus_pahari
MGP_CAROLIEiJ_G0022873	A1cf	100	99.496	MGP_SPRETEiJ_G0023792	A1cf	100	99.496	Mus_spretus
MGP_CAROLIEiJ_G0022873	A1cf	100	86.387	ENSMPUG00000016971	A1CF	100	86.387	Mustela_putorius_furo
MGP_CAROLIEiJ_G0022873	A1cf	100	91.765	ENSMLUG00000016071	A1CF	100	91.765	Myotis_lucifugus
MGP_CAROLIEiJ_G0022873	A1cf	100	94.790	ENSNGAG00000015136	A1cf	100	94.790	Nannospalax_galili
MGP_CAROLIEiJ_G0022873	A1cf	100	74.545	ENSNBRG00000001712	a1cf	100	76.529	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0022873	A1cf	100	94.118	ENSNLEG00000012028	A1CF	100	94.118	Nomascus_leucogenys
MGP_CAROLIEiJ_G0022873	A1cf	94	87.207	ENSMEUG00000015909	A1CF	100	87.027	Notamacropus_eugenii
MGP_CAROLIEiJ_G0022873	A1cf	88	82.476	ENSOPRG00000010667	A1CF	97	82.453	Ochotona_princeps
MGP_CAROLIEiJ_G0022873	A1cf	100	74.876	ENSONIG00000019105	a1cf	100	76.033	Oreochromis_niloticus
MGP_CAROLIEiJ_G0022873	A1cf	78	87.800	ENSOANG00000007360	A1CF	99	87.800	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.327	ENSOCUG00000011587	A1CF	100	92.007	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0022873	A1cf	100	72.712	ENSORLG00000013342	a1cf	100	72.330	Oryzias_latipes
MGP_CAROLIEiJ_G0022873	A1cf	100	73.409	ENSORLG00020000586	a1cf	100	73.453	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0022873	A1cf	100	73.246	ENSORLG00015018569	a1cf	100	73.290	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0022873	A1cf	100	73.466	ENSOMEG00000013531	a1cf	100	73.466	Oryzias_melastigma
MGP_CAROLIEiJ_G0022873	A1cf	100	91.429	ENSOGAG00000012884	A1CF	100	91.765	Otolemur_garnettii
MGP_CAROLIEiJ_G0022873	A1cf	100	92.101	ENSOARG00000013695	A1CF	100	92.101	Ovis_aries
MGP_CAROLIEiJ_G0022873	A1cf	97	91.334	ENSPPAG00000028115	A1CF	100	95.749	Pan_paniscus
MGP_CAROLIEiJ_G0022873	A1cf	100	90.588	ENSPPRG00000012180	A1CF	100	90.924	Panthera_pardus
MGP_CAROLIEiJ_G0022873	A1cf	100	90.588	ENSPTIG00000021223	A1CF	100	90.924	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0022873	A1cf	100	93.277	ENSPTRG00000002508	A1CF	100	93.277	Pan_troglodytes
MGP_CAROLIEiJ_G0022873	A1cf	100	93.697	ENSPANG00000021988	A1CF	100	93.186	Papio_anubis
MGP_CAROLIEiJ_G0022873	A1cf	100	79.368	ENSPKIG00000025176	a1cf	100	79.534	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0022873	A1cf	100	86.224	ENSPSIG00000010318	A1CF	100	85.714	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0022873	A1cf	88	72.340	ENSPMGG00000013359	a1cf	99	69.031	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0022873	A1cf	100	96.134	ENSPEMG00000015021	A1cf	100	96.134	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0022873	A1cf	100	86.735	ENSPCIG00000002175	A1CF	100	86.565	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0022873	A1cf	100	75.081	ENSPFOG00000006683	a1cf	100	76.547	Poecilia_formosa
MGP_CAROLIEiJ_G0022873	A1cf	100	74.919	ENSPFOG00000007437	-	100	76.384	Poecilia_formosa
MGP_CAROLIEiJ_G0022873	A1cf	100	74.752	ENSPLAG00000001210	-	100	76.238	Poecilia_latipinna
MGP_CAROLIEiJ_G0022873	A1cf	100	74.752	ENSPLAG00000000026	a1cf	100	76.238	Poecilia_latipinna
MGP_CAROLIEiJ_G0022873	A1cf	100	67.647	ENSPMEG00000015529	-	100	69.118	Poecilia_mexicana
MGP_CAROLIEiJ_G0022873	A1cf	100	67.384	ENSPMEG00000000921	a1cf	100	68.874	Poecilia_mexicana
MGP_CAROLIEiJ_G0022873	A1cf	100	74.756	ENSPREG00000016298	a1cf	100	76.221	Poecilia_reticulata
MGP_CAROLIEiJ_G0022873	A1cf	100	93.867	ENSPPYG00000002819	A1CF	100	93.867	Pongo_abelii
MGP_CAROLIEiJ_G0022873	A1cf	79	72.414	ENSPCAG00000006463	A1CF	70	83.673	Procavia_capensis
MGP_CAROLIEiJ_G0022873	A1cf	100	92.450	ENSPCOG00000024172	A1CF	100	92.953	Propithecus_coquereli
MGP_CAROLIEiJ_G0022873	A1cf	100	74.551	ENSPNYG00000017944	a1cf	100	76.509	Pundamilia_nyererei
MGP_CAROLIEiJ_G0022873	A1cf	100	79.362	ENSPNAG00000007704	a1cf	100	79.362	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0022873	A1cf	100	98.126	ENSRNOG00000033195	A1cf	100	98.126	Rattus_norvegicus
MGP_CAROLIEiJ_G0022873	A1cf	100	87.270	ENSRBIG00000042892	A1CF	100	91.252	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0022873	A1cf	100	93.782	ENSRROG00000041398	A1CF	100	93.277	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0022873	A1cf	100	93.613	ENSSBOG00000021930	A1CF	100	93.613	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0022873	A1cf	100	86.913	ENSSHAG00000005096	A1CF	100	86.745	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0022873	A1cf	100	78.487	ENSSFOG00015011774	a1cf	100	78.487	Scleropages_formosus
MGP_CAROLIEiJ_G0022873	A1cf	100	74.430	ENSSMAG00000013271	a1cf	100	74.756	Scophthalmus_maximus
MGP_CAROLIEiJ_G0022873	A1cf	100	75.788	ENSSDUG00000013930	a1cf	100	76.783	Seriola_dumerili
MGP_CAROLIEiJ_G0022873	A1cf	100	69.398	ENSSLDG00000004290	a1cf	100	70.401	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0022873	A1cf	95	82.079	ENSSARG00000005940	A1CF	96	82.079	Sorex_araneus
MGP_CAROLIEiJ_G0022873	A1cf	95	85.237	ENSSPUG00000006797	A1CF	95	85.237	Sphenodon_punctatus
MGP_CAROLIEiJ_G0022873	A1cf	100	92.941	ENSSSCG00000010431	A1CF	100	92.941	Sus_scrofa
MGP_CAROLIEiJ_G0022873	A1cf	100	85.953	ENSTGUG00000005090	A1CF	100	85.786	Taeniopygia_guttata
MGP_CAROLIEiJ_G0022873	A1cf	100	73.736	ENSTRUG00000001982	a1cf	100	73.736	Takifugu_rubripes
MGP_CAROLIEiJ_G0022873	A1cf	100	74.472	ENSTNIG00000003580	a1cf	100	74.472	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0022873	A1cf	97	85.062	ENSTTRG00000013190	A1CF	95	85.062	Tursiops_truncatus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.993	ENSUAMG00000020065	A1CF	100	92.164	Ursus_americanus
MGP_CAROLIEiJ_G0022873	A1cf	100	91.765	ENSUMAG00000011162	A1CF	100	91.933	Ursus_maritimus
MGP_CAROLIEiJ_G0022873	A1cf	87	88.499	ENSVPAG00000006130	A1CF	86	88.499	Vicugna_pacos
MGP_CAROLIEiJ_G0022873	A1cf	100	91.993	ENSVVUG00000002504	A1CF	100	92.164	Vulpes_vulpes
MGP_CAROLIEiJ_G0022873	A1cf	100	76.833	ENSXETG00000006611	a1cf	100	76.500	Xenopus_tropicalis
MGP_CAROLIEiJ_G0022873	A1cf	100	76.246	ENSXCOG00000003302	a1cf	100	77.243	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0022873	A1cf	100	76.393	ENSXMAG00000016703	a1cf	100	77.377	Xiphophorus_maculatus