EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0022959 (Gene tree)
Gene ID: 110285665
Gene Symbol: Exosc1
Alias: 2610035C18Rik|2610104C07Rik|2610312F07Rik
Full Name: exosome component 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 8889 bases
Position: chr19:38599599-38608487
Accession: 1913833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0048789	EXOSC1	PF10447.9	9.7e-15	1	1
MGP_CAROLIEiJ_P0048790	ECR1_N	PF14382.6	6.6e-09	1	1
MGP_CAROLIEiJ_P0048789	ECR1_N	PF14382.6	8.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0048789	-	1644	-	MGP_CAROLIEiJ_P0048789	195 (aa)	-	-
MGP_CAROLIEiJ_T0048790	-	1521	-	MGP_CAROLIEiJ_P0048790	154 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0022959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0022959's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSG00000171311	EXOSC1	100	95.385	Homo_sapiens
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSAPOG00000007822	exosc1	98	78.534	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSAMEG00000000129	EXOSC1	100	96.923	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0022959	Exosc1	96	78.191	ENSACIG00000018956	exosc1	92	78.191	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSAOCG00000010699	exosc1	98	78.534	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0022959	Exosc1	92	69.274	ENSAPEG00000012690	exosc1	96	69.274	Amphiprion_percula
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.010	ENSATEG00000018683	exosc1	98	78.010	Anabas_testudineus
MGP_CAROLIEiJ_G0022959	Exosc1	99	85.492	ENSACAG00000002101	EXOSC1	99	85.492	Anolis_carolinensis
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSANAG00000034669	EXOSC1	100	97.403	Aotus_nancymaae
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSACLG00000021243	exosc1	98	78.534	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0022959	Exosc1	98	80.105	ENSAMXG00000011116	exosc1	98	80.105	Astyanax_mexicanus
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.436	ENSBTAG00000012699	EXOSC1	100	97.436	Bos_taurus
MGP_CAROLIEiJ_G0022959	Exosc1	92	32.979	WBGene00012966	exos-1	90	32.979	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.436	ENSCJAG00000016586	EXOSC1	100	97.436	Callithrix_jacchus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.410	ENSCAFG00000009068	EXOSC1	94	96.410	Canis_familiaris
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.410	ENSCAFG00020006002	EXOSC1	94	96.410	Canis_lupus_dingo
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.436	ENSCHIG00000015253	EXOSC1	100	97.436	Capra_hircus
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSTSYG00000000760	EXOSC1	100	97.403	Carlito_syrichta
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSCPOG00000001173	EXOSC1	100	97.403	Cavia_porcellus
MGP_CAROLIEiJ_G0022959	Exosc1	100	60.248	ENSCCAG00000023986	EXOSC1	100	60.248	Cebus_capucinus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSCATG00000034114	EXOSC1	100	96.104	Cercocebus_atys
MGP_CAROLIEiJ_G0022959	Exosc1	100	98.052	ENSCLAG00000002463	EXOSC1	100	98.052	Chinchilla_lanigera
MGP_CAROLIEiJ_G0022959	Exosc1	100	94.872	ENSCSAG00000005870	EXOSC1	100	94.872	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0022959	Exosc1	96	82.888	ENSCHOG00000006477	EXOSC1	100	82.888	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0022959	Exosc1	54	83.019	ENSCPBG00000011949	EXOSC1	88	83.019	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0022959	Exosc1	95	55.080	ENSCING00000022734	-	89	55.080	Ciona_intestinalis
MGP_CAROLIEiJ_G0022959	Exosc1	95	55.615	ENSCSAVG00000010865	-	95	55.615	Ciona_savignyi
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSCANG00000034159	EXOSC1	100	96.104	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSCGRG00001000335	Exosc1	100	99.487	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSCGRG00000011602	Exosc1	100	99.487	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0022959	Exosc1	98	67.016	ENSCSEG00000007895	exosc1	95	67.016	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.869	ENSCVAG00000016748	exosc1	98	74.869	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSDARG00000059841	exosc1	98	79.058	Danio_rerio
MGP_CAROLIEiJ_G0022959	Exosc1	75	95.946	ENSDNOG00000007983	EXOSC1	100	95.946	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSDORG00000016528	Exosc1	100	97.403	Dipodomys_ordii
MGP_CAROLIEiJ_G0022959	Exosc1	94	48.148	FBgn0032346	Csl4	92	48.148	Drosophila_melanogaster
MGP_CAROLIEiJ_G0022959	Exosc1	100	95.897	ENSETEG00000002469	-	100	95.897	Echinops_telfairi
MGP_CAROLIEiJ_G0022959	Exosc1	99	61.735	ENSEBUG00000008164	exosc1	98	61.735	Eptatretus_burgeri
MGP_CAROLIEiJ_G0022959	Exosc1	100	87.692	ENSEASG00005008684	EXOSC1	100	87.692	Equus_asinus_asinus
MGP_CAROLIEiJ_G0022959	Exosc1	61	77.311	ENSECAG00000010621	EXOSC1	71	77.311	Equus_caballus
MGP_CAROLIEiJ_G0022959	Exosc1	100	95.897	ENSEEUG00000005647	EXOSC1	100	95.897	Erinaceus_europaeus
MGP_CAROLIEiJ_G0022959	Exosc1	94	79.348	ENSELUG00000017369	exosc1	97	63.542	Esox_lucius
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSFCAG00000040563	EXOSC1	94	96.923	Felis_catus
MGP_CAROLIEiJ_G0022959	Exosc1	100	84.103	ENSFALG00000008450	EXOSC1	100	84.103	Ficedula_albicollis
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSFDAG00000000846	EXOSC1	100	96.923	Fukomys_damarensis
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.869	ENSFHEG00000009154	exosc1	98	74.869	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSGMOG00000008993	exosc1	98	78.534	Gadus_morhua
MGP_CAROLIEiJ_G0022959	Exosc1	100	73.333	ENSGALG00000039917	EXOSC1	100	87.671	Gallus_gallus
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.869	ENSGAFG00000010265	exosc1	94	74.869	Gambusia_affinis
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSGACG00000018936	exosc1	98	78.534	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	85.641	ENSGAGG00000019192	EXOSC1	100	85.641	Gopherus_agassizii
MGP_CAROLIEiJ_G0022959	Exosc1	100	84.103	ENSGGOG00000003099	EXOSC1	100	84.103	Gorilla_gorilla
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSHBUG00000017857	exosc1	98	78.534	Haplochromis_burtoni
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSHGLG00000016927	EXOSC1	100	97.403	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSHGLG00100012208	EXOSC1	100	97.403	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0022959	Exosc1	98	77.487	ENSHCOG00000019882	exosc1	98	77.487	Hippocampus_comes
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSIPUG00000007685	exosc1	98	79.058	Ictalurus_punctatus
MGP_CAROLIEiJ_G0022959	Exosc1	63	80.328	ENSSTOG00000029860	-	93	80.328	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSSTOG00000006615	EXOSC1	100	97.403	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSJJAG00000013311	Exosc1	100	96.923	Jaculus_jaculus
MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	ENSKMAG00000001202	exosc1	81	77.083	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.010	ENSLBEG00000011448	exosc1	98	78.010	Labrus_bergylta
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.522	ENSLOCG00000003776	exosc1	99	74.522	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSLAFG00000015983	EXOSC1	100	96.923	Loxodonta_africana
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSMFAG00000001493	EXOSC1	100	96.104	Macaca_fascicularis
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSMMUG00000020028	EXOSC1	100	96.104	Macaca_mulatta
MGP_CAROLIEiJ_G0022959	Exosc1	100	95.385	ENSMNEG00000029816	EXOSC1	100	95.385	Macaca_nemestrina
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSMLEG00000027643	EXOSC1	100	96.104	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSMAMG00000012200	exosc1	98	79.058	Mastacembelus_armatus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSMZEG00005007042	exosc1	98	78.534	Maylandia_zebra
MGP_CAROLIEiJ_G0022959	Exosc1	100	87.179	ENSMAUG00000020462	-	100	87.179	Mesocricetus_auratus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.753	ENSMICG00000007664	EXOSC1	100	96.753	Microcebus_murinus
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSMOCG00000006004	-	100	99.487	Microtus_ochrogaster
MGP_CAROLIEiJ_G0022959	Exosc1	97	92.632	ENSMOCG00000017124	-	97	92.632	Microtus_ochrogaster
MGP_CAROLIEiJ_G0022959	Exosc1	99	75.163	ENSMMOG00000021403	exosc1	99	75.163	Mola_mola
MGP_CAROLIEiJ_G0022959	Exosc1	100	91.327	ENSMODG00000004213	EXOSC1	100	91.327	Monodelphis_domestica
MGP_CAROLIEiJ_G0022959	Exosc1	94	79.348	ENSMALG00000007061	exosc1	92	79.348	Monopterus_albus
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSMUSG00000034321	Exosc1	100	99.487	Mus_musculus
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	MGP_PahariEiJ_G0014449	Exosc1	100	99.487	Mus_pahari
MGP_CAROLIEiJ_G0022959	Exosc1	100	100.000	MGP_SPRETEiJ_G0023880	Exosc1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSMPUG00000017044	EXOSC1	100	96.923	Mustela_putorius_furo
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.410	ENSMLUG00000009228	EXOSC1	100	96.410	Myotis_lucifugus
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.436	ENSNGAG00000022033	Exosc1	100	97.436	Nannospalax_galili
MGP_CAROLIEiJ_G0022959	Exosc1	97	76.000	ENSNBRG00000024007	exosc1	97	76.000	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSNLEG00000013872	EXOSC1	100	96.104	Nomascus_leucogenys
MGP_CAROLIEiJ_G0022959	Exosc1	59	88.696	ENSMEUG00000002246	EXOSC1	100	88.696	Notamacropus_eugenii
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSOPRG00000005065	EXOSC1	100	96.923	Ochotona_princeps
MGP_CAROLIEiJ_G0022959	Exosc1	100	97.403	ENSODEG00000016709	EXOSC1	100	97.403	Octodon_degus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSONIG00000017683	exosc1	98	78.534	Oreochromis_niloticus
MGP_CAROLIEiJ_G0022959	Exosc1	59	92.174	ENSOANG00000006563	EXOSC1	98	90.323	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0022959	Exosc1	100	91.795	ENSOCUG00000026461	-	100	91.795	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.429	ENSOCUG00000011898	-	100	96.429	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	ENSORLG00000011595	exosc1	98	77.083	Oryzias_latipes
MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	ENSORLG00020005831	exosc1	98	77.083	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	ENSORLG00015004317	exosc1	98	77.083	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0022959	Exosc1	97	63.584	ENSOMEG00000013907	exosc1	98	63.584	Oryzias_melastigma
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSOGAG00000016259	EXOSC1	100	96.923	Otolemur_garnettii
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSOARG00000010136	EXOSC1	100	96.923	Ovis_aries
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSPPAG00000039842	EXOSC1	100	96.104	Pan_paniscus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSPPRG00000023366	EXOSC1	100	96.923	Panthera_pardus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSPTIG00000017701	EXOSC1	100	96.923	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSPTRG00000002808	EXOSC1	100	96.104	Pan_troglodytes
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSPANG00000021324	EXOSC1	100	96.104	Papio_anubis
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.581	ENSPKIG00000016037	exosc1	98	79.581	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0022959	Exosc1	75	80.822	ENSPSIG00000013571	EXOSC1	98	81.148	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0022959	Exosc1	98	68.063	ENSPMGG00000014002	exosc1	98	68.063	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSPEMG00000010710	-	100	99.487	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0022959	Exosc1	95	70.053	ENSPMAG00000000195	exosc1	95	70.053	Petromyzon_marinus
MGP_CAROLIEiJ_G0022959	Exosc1	100	92.308	ENSPCIG00000002210	EXOSC1	99	92.308	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.346	ENSPFOG00000006755	exosc1	94	74.346	Poecilia_formosa
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.346	ENSPLAG00000005880	exosc1	98	74.346	Poecilia_latipinna
MGP_CAROLIEiJ_G0022959	Exosc1	98	74.346	ENSPMEG00000015598	exosc1	94	74.346	Poecilia_mexicana
MGP_CAROLIEiJ_G0022959	Exosc1	98	65.969	ENSPREG00000000405	exosc1	93	65.969	Poecilia_reticulata
MGP_CAROLIEiJ_G0022959	Exosc1	100	94.872	ENSPPYG00000002531	EXOSC1	100	94.872	Pongo_abelii
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSPCAG00000009135	EXOSC1	100	96.923	Procavia_capensis
MGP_CAROLIEiJ_G0022959	Exosc1	100	90.769	ENSPCOG00000027539	EXOSC1	100	90.769	Propithecus_coquereli
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSPVAG00000003372	EXOSC1	100	96.923	Pteropus_vampyrus
MGP_CAROLIEiJ_G0022959	Exosc1	98	78.534	ENSPNYG00000021745	exosc1	98	78.534	Pundamilia_nyererei
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSPNAG00000001944	exosc1	98	79.058	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	ENSRNOG00000048708	Exosc1	100	99.487	Rattus_norvegicus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSRBIG00000035618	EXOSC1	100	96.104	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.104	ENSRROG00000032589	EXOSC1	100	96.104	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.923	ENSSBOG00000000359	EXOSC1	100	96.923	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0022959	Exosc1	75	93.878	ENSSHAG00000018219	EXOSC1	100	93.878	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0022959	Exosc1	98	81.152	ENSSFOG00015009069	exosc1	98	81.152	Scleropages_formosus
MGP_CAROLIEiJ_G0022959	Exosc1	97	76.316	ENSSFOG00015016289	-	98	76.316	Scleropages_formosus
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSSMAG00000003721	exosc1	98	79.058	Scophthalmus_maximus
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSSDUG00000002993	exosc1	98	79.058	Seriola_dumerili
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	ENSSLDG00000025181	exosc1	98	79.058	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0022959	Exosc1	100	83.077	ENSSARG00000000162	EXOSC1	100	83.077	Sorex_araneus
MGP_CAROLIEiJ_G0022959	Exosc1	99	84.021	ENSSPUG00000012263	EXOSC1	99	84.021	Sphenodon_punctatus
MGP_CAROLIEiJ_G0022959	Exosc1	98	70.157	ENSSPAG00000016792	exosc1	82	70.157	Stegastes_partitus
MGP_CAROLIEiJ_G0022959	Exosc1	100	95.897	ENSSSCG00000010518	EXOSC1	91	95.897	Sus_scrofa
MGP_CAROLIEiJ_G0022959	Exosc1	98	82.292	ENSTGUG00000009692	EXOSC1	99	82.292	Taeniopygia_guttata
MGP_CAROLIEiJ_G0022959	Exosc1	97	72.487	ENSTRUG00000007706	exosc1	98	72.487	Takifugu_rubripes
MGP_CAROLIEiJ_G0022959	Exosc1	97	72.396	ENSTNIG00000014079	exosc1	97	72.396	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0022959	Exosc1	100	88.205	ENSTBEG00000006011	EXOSC1	100	88.205	Tupaia_belangeri
MGP_CAROLIEiJ_G0022959	Exosc1	94	96.196	ENSTTRG00000009887	EXOSC1	100	96.196	Tursiops_truncatus
MGP_CAROLIEiJ_G0022959	Exosc1	100	85.161	ENSUAMG00000010266	EXOSC1	100	85.161	Ursus_americanus
MGP_CAROLIEiJ_G0022959	Exosc1	100	84.615	ENSUMAG00000022002	EXOSC1	100	84.615	Ursus_maritimus
MGP_CAROLIEiJ_G0022959	Exosc1	100	96.410	ENSVVUG00000023192	EXOSC1	63	96.410	Vulpes_vulpes
MGP_CAROLIEiJ_G0022959	Exosc1	98	79.688	ENSXETG00000003434	exosc1	99	79.688	Xenopus_tropicalis
MGP_CAROLIEiJ_G0022959	Exosc1	62	84.167	ENSXCOG00000014499	exosc1	92	84.167	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0022959	Exosc1	98	66.492	ENSXMAG00000023382	exosc1	93	66.492	Xiphophorus_maculatus