EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0023100 (Gene tree)
Gene ID: 110285616
Gene Symbol: Trub1
Alias: 2610009I02Rik|9030425C13Rik
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 38866 bases
Position: chr19:53927048-53965913
Accession: 110285616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0049247	TruB_N	PF01509.18	5.7e-51	1	1
MGP_CAROLIEiJ_P0049248	TruB_N	PF01509.18	6.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0049248	-	4310	-	MGP_CAROLIEiJ_P0049248	247 (aa)	XP_021007557	UPI000A3165F1
MGP_CAROLIEiJ_T0049247	-	3770	XM_021151897	MGP_CAROLIEiJ_P0049247	338 (aa)	XP_021007556	UPI000A31A57D

Gene Model

Click here to download MGP_CAROLIEiJ_G0023100's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0023100's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0023100	Trub1	57	30.055	MGP_CAROLIEiJ_G0023368	Trub2	87	31.073

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0023100	Trub1	99	81.089	ENSG00000165832	TRUB1	99	81.089	Homo_sapiens
MGP_CAROLIEiJ_G0023100	Trub1	74	69.399	ENSAPOG00000020565	trub1	90	68.421	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0023100	Trub1	89	85.479	ENSAMEG00000014931	TRUB1	99	81.197	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0023100	Trub1	76	59.358	ENSACIG00000003060	trub1	81	62.397	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0023100	Trub1	75	67.742	ENSAOCG00000017188	trub1	88	69.008	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0023100	Trub1	79	65.816	ENSAPEG00000015209	trub1	88	68.595	Amphiprion_percula
MGP_CAROLIEiJ_G0023100	Trub1	76	68.449	ENSATEG00000023291	trub1	85	68.487	Anabas_testudineus
MGP_CAROLIEiJ_G0023100	Trub1	81	71.898	ENSAPLG00000006808	TRUB1	96	72.285	Anas_platyrhynchos
MGP_CAROLIEiJ_G0023100	Trub1	81	68.727	ENSACAG00000009282	TRUB1	96	69.057	Anolis_carolinensis
MGP_CAROLIEiJ_G0023100	Trub1	89	87.000	ENSANAG00000022870	TRUB1	99	80.802	Aotus_nancymaae
MGP_CAROLIEiJ_G0023100	Trub1	79	64.615	ENSACLG00000000823	trub1	89	66.532	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0023100	Trub1	77	65.251	ENSAMXG00000015845	trub1	85	65.882	Astyanax_mexicanus
MGP_CAROLIEiJ_G0023100	Trub1	89	85.762	ENSBTAG00000012955	TRUB1	100	79.830	Bos_taurus
MGP_CAROLIEiJ_G0023100	Trub1	99	80.286	ENSCJAG00000047815	TRUB1	99	80.571	Callithrix_jacchus
MGP_CAROLIEiJ_G0023100	Trub1	88	87.500	ENSCAFG00000011688	TRUB1	99	81.375	Canis_familiaris
MGP_CAROLIEiJ_G0023100	Trub1	89	86.711	ENSCAFG00020013237	TRUB1	99	81.662	Canis_lupus_dingo
MGP_CAROLIEiJ_G0023100	Trub1	89	86.093	ENSCHIG00000020884	TRUB1	100	79.487	Capra_hircus
MGP_CAROLIEiJ_G0023100	Trub1	89	86.047	ENSTSYG00000000446	TRUB1	99	80.000	Carlito_syrichta
MGP_CAROLIEiJ_G0023100	Trub1	66	87.654	ENSCAPG00000017088	TRUB1	99	76.680	Cavia_aperea
MGP_CAROLIEiJ_G0023100	Trub1	94	78.689	ENSCPOG00000040236	-	100	79.918	Cavia_porcellus
MGP_CAROLIEiJ_G0023100	Trub1	98	78.543	ENSCPOG00000030129	-	90	74.494	Cavia_porcellus
MGP_CAROLIEiJ_G0023100	Trub1	89	86.711	ENSCCAG00000028842	TRUB1	99	80.571	Cebus_capucinus
MGP_CAROLIEiJ_G0023100	Trub1	99	79.943	ENSCATG00000033431	TRUB1	99	81.089	Cercocebus_atys
MGP_CAROLIEiJ_G0023100	Trub1	94	80.328	ENSCLAG00000008664	TRUB1	100	79.508	Chinchilla_lanigera
MGP_CAROLIEiJ_G0023100	Trub1	99	79.943	ENSCSAG00000004891	TRUB1	99	81.089	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0023100	Trub1	100	67.143	ENSCHOG00000011931	TRUB1	86	73.179	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0023100	Trub1	80	75.277	ENSCPBG00000003051	TRUB1	92	74.906	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0023100	Trub1	99	79.943	ENSCANG00000029445	TRUB1	99	81.089	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0023100	Trub1	83	79.359	ENSCGRG00001010322	-	86	71.598	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0023100	Trub1	75	87.451	ENSCGRG00001016772	-	85	87.160	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0023100	Trub1	100	81.657	ENSCGRG00000010806	Trub1	100	83.136	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0023100	Trub1	76	65.241	ENSCSEG00000011261	trub1	93	57.840	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSCVAG00000008791	trub1	76	66.802	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0023100	Trub1	78	65.152	ENSDARG00000053805	trub1	89	65.385	Danio_rerio
MGP_CAROLIEiJ_G0023100	Trub1	96	76.347	ENSDNOG00000001069	TRUB1	81	81.754	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0023100	Trub1	96	84.356	ENSDORG00000010431	Trub1	94	84.356	Dipodomys_ordii
MGP_CAROLIEiJ_G0023100	Trub1	67	87.324	ENSETEG00000009183	TRUB1	61	89.552	Echinops_telfairi
MGP_CAROLIEiJ_G0023100	Trub1	88	85.953	ENSEASG00005014739	TRUB1	100	81.143	Equus_asinus_asinus
MGP_CAROLIEiJ_G0023100	Trub1	88	85.953	ENSECAG00000007177	TRUB1	100	81.143	Equus_caballus
MGP_CAROLIEiJ_G0023100	Trub1	87	74.490	ENSEEUG00000013993	TRUB1	79	74.035	Erinaceus_europaeus
MGP_CAROLIEiJ_G0023100	Trub1	82	66.337	ENSELUG00000000502	trub1	84	69.710	Esox_lucius
MGP_CAROLIEiJ_G0023100	Trub1	89	86.667	ENSFCAG00000031927	TRUB1	99	82.421	Felis_catus
MGP_CAROLIEiJ_G0023100	Trub1	71	72.199	ENSFALG00000002232	TRUB1	93	72.199	Ficedula_albicollis
MGP_CAROLIEiJ_G0023100	Trub1	94	79.508	ENSFDAG00000008140	TRUB1	81	90.355	Fukomys_damarensis
MGP_CAROLIEiJ_G0023100	Trub1	76	66.310	ENSFHEG00000004016	trub1	83	66.116	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0023100	Trub1	80	71.218	ENSGALG00000009091	TRUB1	94	71.161	Gallus_gallus
MGP_CAROLIEiJ_G0023100	Trub1	76	65.426	ENSGAFG00000009193	trub1	85	65.145	Gambusia_affinis
MGP_CAROLIEiJ_G0023100	Trub1	59	66.332	ENSGACG00000015387	trub1	96	67.179	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0023100	Trub1	88	70.370	ENSGAGG00000009758	TRUB1	76	75.655	Gopherus_agassizii
MGP_CAROLIEiJ_G0023100	Trub1	99	80.802	ENSGGOG00000004583	TRUB1	99	80.802	Gorilla_gorilla
MGP_CAROLIEiJ_G0023100	Trub1	80	64.141	ENSHBUG00000016787	trub1	89	66.532	Haplochromis_burtoni
MGP_CAROLIEiJ_G0023100	Trub1	100	75.000	ENSHGLG00000015314	TRUB1	100	76.504	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0023100	Trub1	94	81.435	ENSHGLG00100009183	TRUB1	100	81.435	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0023100	Trub1	76	65.775	ENSHCOG00000017877	trub1	87	66.390	Hippocampus_comes
MGP_CAROLIEiJ_G0023100	Trub1	79	65.299	ENSIPUG00000017559	trub1	93	65.283	Ictalurus_punctatus
MGP_CAROLIEiJ_G0023100	Trub1	89	85.099	ENSSTOG00000003641	TRUB1	100	80.882	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0023100	Trub1	100	78.235	ENSJJAG00000011800	Trub1	100	75.731	Jaculus_jaculus
MGP_CAROLIEiJ_G0023100	Trub1	76	65.241	ENSKMAG00000006232	trub1	91	64.427	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSLBEG00000026722	trub1	85	66.529	Labrus_bergylta
MGP_CAROLIEiJ_G0023100	Trub1	82	71.014	ENSLACG00000014885	TRUB1	88	72.624	Latimeria_chalumnae
MGP_CAROLIEiJ_G0023100	Trub1	78	69.811	ENSLOCG00000012979	trub1	87	70.039	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0023100	Trub1	96	78.512	ENSLAFG00000015452	TRUB1	99	74.785	Loxodonta_africana
MGP_CAROLIEiJ_G0023100	Trub1	99	80.229	ENSMFAG00000031767	TRUB1	99	81.375	Macaca_fascicularis
MGP_CAROLIEiJ_G0023100	Trub1	99	79.943	ENSMMUG00000001902	TRUB1	99	81.089	Macaca_mulatta
MGP_CAROLIEiJ_G0023100	Trub1	99	75.645	ENSMNEG00000044646	TRUB1	99	76.791	Macaca_nemestrina
MGP_CAROLIEiJ_G0023100	Trub1	99	80.229	ENSMLEG00000042655	TRUB1	99	81.089	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0023100	Trub1	79	64.615	ENSMZEG00005024095	trub1	89	66.532	Maylandia_zebra
MGP_CAROLIEiJ_G0023100	Trub1	80	71.481	ENSMGAG00000011135	TRUB1	91	71.429	Meleagris_gallopavo
MGP_CAROLIEiJ_G0023100	Trub1	100	81.953	ENSMAUG00000011101	Trub1	100	81.953	Mesocricetus_auratus
MGP_CAROLIEiJ_G0023100	Trub1	100	80.516	ENSMICG00000016324	TRUB1	100	81.948	Microcebus_murinus
MGP_CAROLIEiJ_G0023100	Trub1	100	82.249	ENSMOCG00000017759	Trub1	100	82.840	Microtus_ochrogaster
MGP_CAROLIEiJ_G0023100	Trub1	79	82.836	ENSMODG00000009676	TRUB1	73	82.707	Monodelphis_domestica
MGP_CAROLIEiJ_G0023100	Trub1	100	98.817	ENSMUSG00000025086	Trub1	100	98.817	Mus_musculus
MGP_CAROLIEiJ_G0023100	Trub1	100	97.041	MGP_PahariEiJ_G0014588	Trub1	100	97.041	Mus_pahari
MGP_CAROLIEiJ_G0023100	Trub1	100	99.112	MGP_SPRETEiJ_G0024021	Trub1	100	99.112	Mus_spretus
MGP_CAROLIEiJ_G0023100	Trub1	89	87.375	ENSMPUG00000003556	TRUB1	99	81.662	Mustela_putorius_furo
MGP_CAROLIEiJ_G0023100	Trub1	95	82.188	ENSMLUG00000017686	TRUB1	99	79.240	Myotis_lucifugus
MGP_CAROLIEiJ_G0023100	Trub1	100	80.747	ENSNGAG00000018682	Trub1	100	80.460	Nannospalax_galili
MGP_CAROLIEiJ_G0023100	Trub1	76	65.775	ENSNBRG00000023393	trub1	86	67.355	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0023100	Trub1	88	86.242	ENSNLEG00000016345	TRUB1	99	80.516	Nomascus_leucogenys
MGP_CAROLIEiJ_G0023100	Trub1	75	86.022	ENSMEUG00000006603	TRUB1	74	88.442	Notamacropus_eugenii
MGP_CAROLIEiJ_G0023100	Trub1	89	79.801	ENSOPRG00000009371	TRUB1	100	75.581	Ochotona_princeps
MGP_CAROLIEiJ_G0023100	Trub1	100	75.072	ENSODEG00000010854	TRUB1	82	83.158	Octodon_degus
MGP_CAROLIEiJ_G0023100	Trub1	82	62.069	ENSONIG00000007249	trub1	90	66.129	Oreochromis_niloticus
MGP_CAROLIEiJ_G0023100	Trub1	81	76.923	ENSOANG00000001556	TRUB1	88	77.154	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0023100	Trub1	89	82.119	ENSOCUG00000009456	TRUB1	100	76.590	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0023100	Trub1	75	68.280	ENSORLG00000029719	trub1	85	68.487	Oryzias_latipes
MGP_CAROLIEiJ_G0023100	Trub1	75	67.742	ENSORLG00020016767	trub1	84	68.067	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0023100	Trub1	75	67.742	ENSORLG00015014728	trub1	85	68.908	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0023100	Trub1	82	65.517	ENSOMEG00000014556	trub1	84	67.782	Oryzias_melastigma
MGP_CAROLIEiJ_G0023100	Trub1	89	87.086	ENSOGAG00000015895	TRUB1	100	81.429	Otolemur_garnettii
MGP_CAROLIEiJ_G0023100	Trub1	87	84.437	ENSOARG00000015591	TRUB1	100	79.261	Ovis_aries
MGP_CAROLIEiJ_G0023100	Trub1	99	81.089	ENSPPAG00000043645	TRUB1	99	81.089	Pan_paniscus
MGP_CAROLIEiJ_G0023100	Trub1	89	86.333	ENSPPRG00000007096	TRUB1	99	82.133	Panthera_pardus
MGP_CAROLIEiJ_G0023100	Trub1	89	86.667	ENSPTIG00000006378	TRUB1	99	82.421	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0023100	Trub1	99	81.089	ENSPTRG00000002964	TRUB1	99	81.089	Pan_troglodytes
MGP_CAROLIEiJ_G0023100	Trub1	99	79.656	ENSPANG00000020712	TRUB1	99	80.802	Papio_anubis
MGP_CAROLIEiJ_G0023100	Trub1	51	68.786	ENSPKIG00000003852	trub1	74	68.786	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0023100	Trub1	86	70.588	ENSPSIG00000012877	TRUB1	92	73.034	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0023100	Trub1	76	64.171	ENSPMGG00000000075	trub1	87	65.560	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0023100	Trub1	100	81.765	ENSPEMG00000011156	Trub1	100	82.647	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0023100	Trub1	85	79.021	ENSPCIG00000009729	TRUB1	77	78.873	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSPFOG00000009950	trub1	89	66.129	Poecilia_formosa
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSPLAG00000013855	trub1	86	66.129	Poecilia_latipinna
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSPMEG00000009064	trub1	88	66.129	Poecilia_mexicana
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSPREG00000003343	trub1	88	66.532	Poecilia_reticulata
MGP_CAROLIEiJ_G0023100	Trub1	96	81.250	ENSPPYG00000002676	TRUB1	99	80.516	Pongo_abelii
MGP_CAROLIEiJ_G0023100	Trub1	79	86.224	ENSPCAG00000008427	TRUB1	80	75.352	Procavia_capensis
MGP_CAROLIEiJ_G0023100	Trub1	89	80.795	ENSPCOG00000024360	TRUB1	100	76.504	Propithecus_coquereli
MGP_CAROLIEiJ_G0023100	Trub1	80	90.355	ENSPVAG00000007575	TRUB1	100	84.791	Pteropus_vampyrus
MGP_CAROLIEiJ_G0023100	Trub1	80	64.141	ENSPNYG00000018614	trub1	89	66.532	Pundamilia_nyererei
MGP_CAROLIEiJ_G0023100	Trub1	72	60.656	ENSPNAG00000006881	trub1	77	60.581	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0023100	Trub1	100	91.496	ENSRNOG00000017321	Trub1	100	90.616	Rattus_norvegicus
MGP_CAROLIEiJ_G0023100	Trub1	99	71.060	ENSRBIG00000033423	TRUB1	99	71.633	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0023100	Trub1	99	80.516	ENSRROG00000033902	TRUB1	99	81.089	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0023100	Trub1	96	82.143	ENSSBOG00000024237	TRUB1	99	80.571	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0023100	Trub1	75	76.953	ENSSHAG00000009346	TRUB1	86	76.953	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0023100	Trub1	79	64.433	ENSSFOG00015022124	trub1	82	68.619	Scleropages_formosus
MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	ENSSMAG00000001020	trub1	86	67.355	Scophthalmus_maximus
MGP_CAROLIEiJ_G0023100	Trub1	73	67.956	ENSSDUG00000016414	trub1	87	67.769	Seriola_dumerili
MGP_CAROLIEiJ_G0023100	Trub1	73	68.508	ENSSLDG00000015486	trub1	87	68.182	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0023100	Trub1	80	76.384	ENSSPUG00000001642	TRUB1	92	76.404	Sphenodon_punctatus
MGP_CAROLIEiJ_G0023100	Trub1	76	67.914	ENSSPAG00000001217	trub1	87	69.421	Stegastes_partitus
MGP_CAROLIEiJ_G0023100	Trub1	100	78.000	ENSSSCG00000010653	TRUB1	100	78.000	Sus_scrofa
MGP_CAROLIEiJ_G0023100	Trub1	80	72.491	ENSTGUG00000010971	TRUB1	95	72.285	Taeniopygia_guttata
MGP_CAROLIEiJ_G0023100	Trub1	75	72.332	ENSTBEG00000002880	TRUB1	99	72.332	Tupaia_belangeri
MGP_CAROLIEiJ_G0023100	Trub1	81	89.055	ENSTTRG00000005767	TRUB1	100	81.679	Tursiops_truncatus
MGP_CAROLIEiJ_G0023100	Trub1	89	87.375	ENSUAMG00000024876	TRUB1	99	82.808	Ursus_americanus
MGP_CAROLIEiJ_G0023100	Trub1	87	88.737	ENSUMAG00000002411	TRUB1	99	82.111	Ursus_maritimus
MGP_CAROLIEiJ_G0023100	Trub1	100	78.571	ENSVPAG00000005507	TRUB1	100	79.714	Vicugna_pacos
MGP_CAROLIEiJ_G0023100	Trub1	88	87.500	ENSVVUG00000010085	TRUB1	83	82.081	Vulpes_vulpes
MGP_CAROLIEiJ_G0023100	Trub1	80	65.185	ENSXETG00000023828	trub1	96	65.414	Xenopus_tropicalis
MGP_CAROLIEiJ_G0023100	Trub1	76	66.845	ENSXCOG00000017847	trub1	85	65.833	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0023100	Trub1	76	66.845	ENSXMAG00000014701	trub1	88	65.323	Xiphophorus_maculatus