EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0023157 (Gene tree)
Gene ID: 110312362
Gene Symbol: Upf2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 105619 bases
Position: chr2:2749765-2855383
Accession: 110312362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0049468	Upf2	PF04050.14	1.5e-32	1	1
MGP_CAROLIEiJ_P0049470	Upf2	PF04050.14	8.5e-32	1	1
MGP_CAROLIEiJ_P0049468	MIF4G	PF02854.19	2.1e-76	1	3
MGP_CAROLIEiJ_P0049468	MIF4G	PF02854.19	2.1e-76	2	3
MGP_CAROLIEiJ_P0049468	MIF4G	PF02854.19	2.1e-76	3	3
MGP_CAROLIEiJ_P0049470	MIF4G	PF02854.19	3.9e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0049470	-	2811	-	MGP_CAROLIEiJ_P0049470	522 (aa)	-	-
MGP_CAROLIEiJ_T0049471	-	546	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0049469	-	4680	-	MGP_CAROLIEiJ_P0049469	1143 (aa)	-	-
MGP_CAROLIEiJ_T0049468	-	5159	XM_021185904	MGP_CAROLIEiJ_P0049468	1269 (aa)	XP_021041563	UPI000A31961D

Gene Model

Click here to download MGP_CAROLIEiJ_G0023157's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0023157's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSG00000151461	UPF2	100	96.934	Homo_sapiens
MGP_CAROLIEiJ_G0023157	Upf2	99	80.262	ENSAPOG00000015837	UPF2	100	78.292	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.166	ENSAMEG00000004586	UPF2	100	97.404	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0023157	Upf2	99	84.495	ENSACIG00000018078	UPF2	100	82.017	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.709	ENSAOCG00000016766	UPF2	100	82.449	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0023157	Upf2	99	84.796	ENSAPEG00000019084	UPF2	100	82.527	Amphiprion_percula
MGP_CAROLIEiJ_G0023157	Upf2	99	84.416	ENSATEG00000021677	UPF2	99	82.243	Anabas_testudineus
MGP_CAROLIEiJ_G0023157	Upf2	99	91.601	ENSAPLG00000010287	UPF2	100	86.231	Anas_platyrhynchos
MGP_CAROLIEiJ_G0023157	Upf2	100	94.476	ENSACAG00000009259	UPF2	100	91.188	Anolis_carolinensis
MGP_CAROLIEiJ_G0023157	Upf2	99	97.897	ENSANAG00000028451	UPF2	99	85.287	Aotus_nancymaae
MGP_CAROLIEiJ_G0023157	Upf2	99	84.696	ENSACLG00000012696	UPF2	100	82.279	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0023157	Upf2	99	85.951	ENSAMXG00000013700	UPF2	99	83.399	Astyanax_mexicanus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	ENSBTAG00000000288	UPF2	100	97.325	Bos_taurus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.095	ENSCJAG00000020685	UPF2	100	96.934	Callithrix_jacchus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	ENSCAFG00000004839	UPF2	100	97.561	Canis_familiaris
MGP_CAROLIEiJ_G0023157	Upf2	99	95.797	ENSCAFG00020005882	UPF2	100	95.268	Canis_lupus_dingo
MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	ENSCHIG00000020359	UPF2	100	97.404	Capra_hircus
MGP_CAROLIEiJ_G0023157	Upf2	100	97.905	ENSTSYG00000000935	UPF2	100	96.696	Carlito_syrichta
MGP_CAROLIEiJ_G0023157	Upf2	99	85.739	ENSCAPG00000016658	UPF2	100	85.866	Cavia_aperea
MGP_CAROLIEiJ_G0023157	Upf2	99	97.514	ENSCPOG00000008809	UPF2	100	94.691	Cavia_porcellus
MGP_CAROLIEiJ_G0023157	Upf2	100	91.965	ENSCCAG00000035991	UPF2	100	90.401	Cebus_capucinus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSCATG00000032679	UPF2	100	97.170	Cercocebus_atys
MGP_CAROLIEiJ_G0023157	Upf2	100	97.642	ENSCLAG00000011434	UPF2	100	97.325	Chinchilla_lanigera
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSCSAG00000013372	UPF2	100	97.170	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0023157	Upf2	89	99.107	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0023157	Upf2	99	95.985	ENSCPBG00000027823	UPF2	100	92.435	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0023157	Upf2	99	49.625	ENSCSAVG00000007772	-	99	48.119	Ciona_savignyi
MGP_CAROLIEiJ_G0023157	Upf2	99	91.319	ENSCANG00000040396	UPF2	100	90.774	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0023157	Upf2	100	99.427	ENSCGRG00001019347	Upf2	100	98.739	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0023157	Upf2	100	99.427	ENSCGRG00000017993	Upf2	100	98.739	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0023157	Upf2	99	80.645	ENSCSEG00000003520	UPF2	99	77.839	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0023157	Upf2	99	84.361	ENSCVAG00000006167	UPF2	100	81.604	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0023157	Upf2	58	79.208	ENSDARG00000111388	CABZ01068469.1	88	81.206	Danio_rerio
MGP_CAROLIEiJ_G0023157	Upf2	100	97.817	ENSDNOG00000018160	UPF2	100	97.246	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.077	ENSDORG00000002478	Upf2	100	97.638	Dipodomys_ordii
MGP_CAROLIEiJ_G0023157	Upf2	72	100.000	ENSETEG00000011583	-	67	100.000	Echinops_telfairi
MGP_CAROLIEiJ_G0023157	Upf2	93	77.273	ENSEBUG00000012448	-	71	68.161	Eptatretus_burgeri
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSEASG00005019274	UPF2	100	97.246	Equus_asinus_asinus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSECAG00000017022	UPF2	100	97.325	Equus_caballus
MGP_CAROLIEiJ_G0023157	Upf2	82	92.332	ENSEEUG00000007819	UPF2	82	92.013	Erinaceus_europaeus
MGP_CAROLIEiJ_G0023157	Upf2	99	83.460	ENSELUG00000012014	UPF2	100	81.946	Esox_lucius
MGP_CAROLIEiJ_G0023157	Upf2	100	98.895	ENSFCAG00000005785	UPF2	100	97.404	Felis_catus
MGP_CAROLIEiJ_G0023157	Upf2	100	94.095	ENSFALG00000001889	UPF2	98	92.998	Ficedula_albicollis
MGP_CAROLIEiJ_G0023157	Upf2	100	97.901	ENSFDAG00000014348	UPF2	100	97.087	Fukomys_damarensis
MGP_CAROLIEiJ_G0023157	Upf2	99	84.522	ENSFHEG00000009826	UPF2	99	82.250	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0023157	Upf2	99	83.479	ENSGMOG00000005557	UPF2	100	80.423	Gadus_morhua
MGP_CAROLIEiJ_G0023157	Upf2	100	93.905	ENSGALG00000033772	UPF2	100	93.160	Gallus_gallus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.087	ENSGAFG00000020867	UPF2	100	80.952	Gambusia_affinis
MGP_CAROLIEiJ_G0023157	Upf2	99	83.826	ENSGACG00000001080	UPF2	100	81.939	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0023157	Upf2	100	95.810	ENSGAGG00000002700	UPF2	100	92.998	Gopherus_agassizii
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSGGOG00000001479	UPF2	100	96.934	Gorilla_gorilla
MGP_CAROLIEiJ_G0023157	Upf2	99	84.669	ENSHBUG00000004249	UPF2	100	82.252	Haplochromis_burtoni
MGP_CAROLIEiJ_G0023157	Upf2	100	97.729	ENSHGLG00000015176	-	100	97.089	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0023157	Upf2	99	88.931	ENSHGLG00000003822	-	99	84.003	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0023157	Upf2	99	97.126	ENSHGLG00100010036	UPF2	100	93.454	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0023157	Upf2	100	83.019	ENSHCOG00000004025	UPF2	99	80.186	Hippocampus_comes
MGP_CAROLIEiJ_G0023157	Upf2	99	85.130	ENSIPUG00000015524	UPF2	100	82.734	Ictalurus_punctatus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.339	ENSSTOG00000013075	UPF2	100	97.953	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0023157	Upf2	100	97.519	ENSJJAG00000004913	Upf2	100	96.850	Jaculus_jaculus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.343	ENSKMAG00000001071	UPF2	99	82.409	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0023157	Upf2	77	85.537	ENSLBEG00000000728	-	93	82.498	Labrus_bergylta
MGP_CAROLIEiJ_G0023157	Upf2	99	85.269	ENSLBEG00000016394	-	99	82.632	Labrus_bergylta
MGP_CAROLIEiJ_G0023157	Upf2	99	81.147	ENSLACG00000015945	UPF2	100	79.451	Latimeria_chalumnae
MGP_CAROLIEiJ_G0023157	Upf2	99	87.576	ENSLOCG00000015698	UPF2	100	85.816	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSMFAG00000043865	UPF2	100	97.091	Macaca_fascicularis
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSMMUG00000008241	UPF2	100	97.091	Macaca_mulatta
MGP_CAROLIEiJ_G0023157	Upf2	81	96.390	ENSMNEG00000008062	UPF2	99	96.670	Macaca_nemestrina
MGP_CAROLIEiJ_G0023157	Upf2	99	94.700	ENSMLEG00000036120	UPF2	100	97.585	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.416	ENSMAMG00000018276	UPF2	100	82.165	Mastacembelus_armatus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.696	ENSMZEG00005021595	UPF2	100	82.279	Maylandia_zebra
MGP_CAROLIEiJ_G0023157	Upf2	99	93.702	ENSMGAG00000004573	UPF2	99	92.520	Meleagris_gallopavo
MGP_CAROLIEiJ_G0023157	Upf2	100	99.427	ENSMAUG00000016512	Upf2	100	96.375	Mesocricetus_auratus
MGP_CAROLIEiJ_G0023157	Upf2	95	98.469	ENSMICG00000001716	UPF2	99	98.469	Microcebus_murinus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.425	ENSMOCG00000008263	Upf2	100	97.794	Microtus_ochrogaster
MGP_CAROLIEiJ_G0023157	Upf2	99	82.650	ENSMMOG00000006528	UPF2	100	80.000	Mola_mola
MGP_CAROLIEiJ_G0023157	Upf2	100	96.381	ENSMODG00000016794	UPF2	100	95.043	Monodelphis_domestica
MGP_CAROLIEiJ_G0023157	Upf2	99	84.233	ENSMALG00000002663	UPF2	100	82.224	Monopterus_albus
MGP_CAROLIEiJ_G0023157	Upf2	100	99.042	ENSMUSG00000043241	Upf2	100	98.897	Mus_musculus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.659	MGP_PahariEiJ_G0019217	Upf2	100	98.659	Mus_pahari
MGP_CAROLIEiJ_G0023157	Upf2	100	99.133	MGP_SPRETEiJ_G0024075	Upf2	100	99.133	Mus_spretus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSMPUG00000001064	UPF2	100	97.404	Mustela_putorius_furo
MGP_CAROLIEiJ_G0023157	Upf2	99	97.706	ENSMLUG00000000228	UPF2	100	96.701	Myotis_lucifugus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.696	ENSNBRG00000013629	UPF2	100	82.279	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	ENSNLEG00000012058	UPF2	100	97.091	Nomascus_leucogenys
MGP_CAROLIEiJ_G0023157	Upf2	61	97.126	ENSMEUG00000002180	-	53	97.409	Notamacropus_eugenii
MGP_CAROLIEiJ_G0023157	Upf2	84	99.187	ENSOPRG00000006801	-	82	99.296	Ochotona_princeps
MGP_CAROLIEiJ_G0023157	Upf2	100	97.467	ENSODEG00000001290	UPF2	100	96.932	Octodon_degus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.783	ENSONIG00000017991	UPF2	100	82.358	Oreochromis_niloticus
MGP_CAROLIEiJ_G0023157	Upf2	60	96.141	ENSOANG00000019744	-	93	97.021	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0023157	Upf2	99	97.988	ENSOCUG00000006230	UPF2	100	96.552	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0023157	Upf2	99	83.550	ENSORLG00000017189	UPF2	100	81.499	Oryzias_latipes
MGP_CAROLIEiJ_G0023157	Upf2	99	83.636	ENSORLG00020005969	UPF2	100	81.499	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0023157	Upf2	99	83.550	ENSORLG00015005713	UPF2	100	81.499	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0023157	Upf2	99	80.000	ENSOMEG00000023420	UPF2	98	78.890	Oryzias_melastigma
MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	ENSOGAG00000005796	UPF2	100	97.718	Otolemur_garnettii
MGP_CAROLIEiJ_G0023157	Upf2	100	98.082	ENSOARG00000014587	UPF2	100	97.251	Ovis_aries
MGP_CAROLIEiJ_G0023157	Upf2	99	93.831	ENSPPAG00000037953	UPF2	100	93.932	Pan_paniscus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	ENSPPRG00000000690	UPF2	100	97.404	Panthera_pardus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	ENSPTIG00000008867	UPF2	100	97.404	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSPTRG00000002291	UPF2	100	96.934	Pan_troglodytes
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSPANG00000023399	UPF2	100	97.091	Papio_anubis
MGP_CAROLIEiJ_G0023157	Upf2	99	84.087	ENSPKIG00000025502	UPF2	100	82.045	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0023157	Upf2	59	91.633	ENSPSIG00000015158	UPF2	95	91.633	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0023157	Upf2	99	82.358	ENSPMGG00000005259	UPF2	100	80.267	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0023157	Upf2	92	98.157	ENSPEMG00000015731	Upf2	99	97.085	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0023157	Upf2	100	96.381	ENSPCIG00000006656	UPF2	100	94.729	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.435	ENSPFOG00000017118	UPF2	100	81.421	Poecilia_formosa
MGP_CAROLIEiJ_G0023157	Upf2	99	84.435	ENSPLAG00000005094	UPF2	100	81.421	Poecilia_latipinna
MGP_CAROLIEiJ_G0023157	Upf2	99	84.522	ENSPMEG00000017009	UPF2	100	81.499	Poecilia_mexicana
MGP_CAROLIEiJ_G0023157	Upf2	99	84.105	ENSPREG00000021880	UPF2	100	81.505	Poecilia_reticulata
MGP_CAROLIEiJ_G0023157	Upf2	100	98.667	ENSPPYG00000002089	-	100	98.684	Pongo_abelii
MGP_CAROLIEiJ_G0023157	Upf2	92	94.606	ENSPCAG00000000684	UPF2	100	82.691	Procavia_capensis
MGP_CAROLIEiJ_G0023157	Upf2	99	95.009	ENSPCOG00000021656	UPF2	100	94.558	Propithecus_coquereli
MGP_CAROLIEiJ_G0023157	Upf2	100	97.714	ENSPVAG00000017286	UPF2	100	89.387	Pteropus_vampyrus
MGP_CAROLIEiJ_G0023157	Upf2	99	83.333	ENSPNYG00000017096	UPF2	100	79.828	Pundamilia_nyererei
MGP_CAROLIEiJ_G0023157	Upf2	99	86.000	ENSPNAG00000009357	UPF2	100	83.997	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0023157	Upf2	99	92.531	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0023157	Upf2	99	98.659	ENSRBIG00000037780	UPF2	100	96.293	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0023157	Upf2	100	98.664	ENSRROG00000043547	UPF2	100	97.168	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0023157	Upf2	100	98.473	ENSSBOG00000020012	UPF2	100	96.932	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0023157	Upf2	99	84.675	ENSSFOG00015023788	upf2	100	82.412	Scleropages_formosus
MGP_CAROLIEiJ_G0023157	Upf2	100	83.490	ENSSMAG00000007637	UPF2	100	80.000	Scophthalmus_maximus
MGP_CAROLIEiJ_G0023157	Upf2	99	85.043	ENSSDUG00000017244	UPF2	99	82.605	Seriola_dumerili
MGP_CAROLIEiJ_G0023157	Upf2	99	83.217	ENSSLDG00000016866	UPF2	82	84.169	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0023157	Upf2	100	96.762	ENSSARG00000008615	UPF2	100	94.650	Sorex_araneus
MGP_CAROLIEiJ_G0023157	Upf2	99	93.130	ENSSPUG00000014544	UPF2	99	89.606	Sphenodon_punctatus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	ENSSSCG00000011117	-	100	98.274	Sus_scrofa
MGP_CAROLIEiJ_G0023157	Upf2	75	93.622	ENSTGUG00000015714	-	100	93.878	Taeniopygia_guttata
MGP_CAROLIEiJ_G0023157	Upf2	99	94.828	ENSTGUG00000002163	-	100	92.744	Taeniopygia_guttata
MGP_CAROLIEiJ_G0023157	Upf2	99	84.069	ENSTRUG00000007519	UPF2	99	81.747	Takifugu_rubripes
MGP_CAROLIEiJ_G0023157	Upf2	99	83.983	ENSTNIG00000004453	UPF2	100	79.206	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0023157	Upf2	93	90.331	ENSTBEG00000012679	UPF2	93	90.331	Tupaia_belangeri
MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	ENSTTRG00000016388	UPF2	100	97.168	Tursiops_truncatus
MGP_CAROLIEiJ_G0023157	Upf2	95	99.306	ENSUAMG00000023560	UPF2	100	97.162	Ursus_americanus
MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	ENSUMAG00000012953	UPF2	95	97.404	Ursus_maritimus
MGP_CAROLIEiJ_G0023157	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	ENSVVUG00000006166	UPF2	100	97.482	Vulpes_vulpes
MGP_CAROLIEiJ_G0023157	Upf2	99	89.111	ENSXETG00000033103	UPF2	91	88.581	Xenopus_tropicalis
MGP_CAROLIEiJ_G0023157	Upf2	99	84.059	ENSXCOG00000011604	UPF2	100	81.079	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0023157	Upf2	99	84.261	ENSXMAG00000017209	UPF2	100	81.109	Xiphophorus_maculatus