EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0023516 (Gene tree)
Gene ID: 110290379
Gene Symbol: Rc3h2
Alias: 2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164
Full Name: ring finger and CCCH-type domains 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 55045 bases
Position: chr2:33255303-33310347
Accession: 110290379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0051504	zf-CCCH	PF00642.24	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0051509	-	513	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051508	-	2573	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051505	-	5662	-	MGP_CAROLIEiJ_P0051505	478 (aa)	-	-
MGP_CAROLIEiJ_T0051504	-	9182	-	MGP_CAROLIEiJ_P0051504	1157 (aa)	XP_021012561	UPI000A31729E
MGP_CAROLIEiJ_T0051507	-	2962	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051506	-	575	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051510	-	3481	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0023516's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0023516's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0023516	Rc3h2	98	80.892	MGP_CAROLIEiJ_G0014756	Rc3h1	92	52.866

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSG00000056586	RC3H2	100	98.745	Homo_sapiens
MGP_CAROLIEiJ_G0023516	Rc3h2	95	87.389	ENSAPOG00000002117	rc3h2	93	57.796	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSAMEG00000006498	RC3H2	100	93.535	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0023516	Rc3h2	93	86.486	ENSACIG00000005206	rc3h2	97	84.934	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0023516	Rc3h2	92	87.755	ENSAOCG00000019780	-	93	87.755	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0023516	Rc3h2	92	87.783	ENSAOCG00000007724	rc3h2	96	87.783	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0023516	Rc3h2	95	87.168	ENSAPEG00000007757	rc3h2	93	57.706	Amphiprion_percula
MGP_CAROLIEiJ_G0023516	Rc3h2	94	86.253	ENSATEG00000019414	rc3h2	91	57.428	Anabas_testudineus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSAPLG00000013920	RC3H2	100	88.097	Anas_platyrhynchos
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSANAG00000030862	RC3H2	100	98.745	Aotus_nancymaae
MGP_CAROLIEiJ_G0023516	Rc3h2	99	82.077	ENSACLG00000023136	rc3h2	92	57.181	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0023516	Rc3h2	94	85.333	ENSAMXG00000006778	rc3h2	93	55.628	Astyanax_mexicanus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSBTAG00000023867	RC3H2	100	92.935	Bos_taurus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSCJAG00000020050	RC3H2	100	98.745	Callithrix_jacchus
MGP_CAROLIEiJ_G0023516	Rc3h2	92	100.000	ENSCAFG00000032522	-	100	100.000	Canis_familiaris
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSCAFG00020015288	RC3H2	100	98.536	Canis_lupus_dingo
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSCHIG00000019319	RC3H2	100	92.851	Capra_hircus
MGP_CAROLIEiJ_G0023516	Rc3h2	79	88.594	ENSCAPG00000017086	RC3H2	93	78.046	Cavia_aperea
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.338	ENSCPOG00000008511	RC3H2	100	93.771	Cavia_porcellus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSCCAG00000001404	RC3H2	100	98.745	Cebus_capucinus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSCATG00000036655	RC3H2	100	98.745	Cercocebus_atys
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.338	ENSCLAG00000013261	RC3H2	100	93.771	Chinchilla_lanigera
MGP_CAROLIEiJ_G0023516	Rc3h2	89	92.938	ENSCSAG00000013416	RC3H2	100	92.938	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSCPBG00000009811	RC3H2	100	87.668	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSCANG00000043140	RC3H2	100	98.745	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.779	ENSCGRG00001010006	Rc3h2	100	93.013	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.779	ENSCGRG00000009255	Rc3h2	98	96.577	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.283	ENSCSEG00000017460	rc3h2	96	56.947	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0023516	Rc3h2	96	84.749	ENSCVAG00000012202	rc3h2	91	57.103	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	84.956	ENSDARG00000063050	rc3h2	96	55.962	Danio_rerio
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSDNOG00000014557	RC3H2	100	92.262	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSDORG00000006398	Rc3h2	100	93.350	Dipodomys_ordii
MGP_CAROLIEiJ_G0023516	Rc3h2	100	91.423	ENSEASG00005020897	RC3H2	100	91.423	Equus_asinus_asinus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSECAG00000022176	RC3H2	100	93.608	Equus_caballus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	87.389	ENSELUG00000006105	rc3h2	93	57.875	Esox_lucius
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSFCAG00000007375	RC3H2	100	93.524	Felis_catus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.675	ENSFALG00000002011	RC3H2	100	88.097	Ficedula_albicollis
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSFDAG00000012477	RC3H2	100	94.108	Fukomys_damarensis
MGP_CAROLIEiJ_G0023516	Rc3h2	94	87.082	ENSFHEG00000012272	rc3h2	93	56.712	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0023516	Rc3h2	54	87.160	ENSGMOG00000016709	-	99	52.881	Gadus_morhua
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSGALG00000001253	RC3H2	100	88.181	Gallus_gallus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.062	ENSGAFG00000007679	rc3h2	96	56.164	Gambusia_affinis
MGP_CAROLIEiJ_G0023516	Rc3h2	92	86.878	ENSGACG00000017369	rc3h2	100	86.878	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSGAGG00000018295	RC3H2	100	87.678	Gopherus_agassizii
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSGGOG00000017062	RC3H2	100	98.536	Gorilla_gorilla
MGP_CAROLIEiJ_G0023516	Rc3h2	99	84.310	ENSHBUG00000003976	rc3h2	92	58.038	Haplochromis_burtoni
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSHGLG00000012014	-	100	98.536	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSHGLG00100018015	RC3H2	100	93.860	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0023516	Rc3h2	94	83.742	ENSHCOG00000003006	rc3h2	93	54.365	Hippocampus_comes
MGP_CAROLIEiJ_G0023516	Rc3h2	95	83.407	ENSIPUG00000021433	rc3h2	96	53.992	Ictalurus_punctatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSSTOG00000010655	RC3H2	100	93.939	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSJJAG00000022376	Rc3h2	100	93.613	Jaculus_jaculus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	85.841	ENSKMAG00000010936	rc3h2	91	57.354	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	93.598	ENSLOCG00000002894	rc3h2	94	60.805	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSLAFG00000003521	RC3H2	100	92.347	Loxodonta_africana
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSMFAG00000035621	RC3H2	100	100.000	Macaca_fascicularis
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSMMUG00000021134	RC3H2	100	98.745	Macaca_mulatta
MGP_CAROLIEiJ_G0023516	Rc3h2	100	96.444	ENSMNEG00000031599	RC3H2	100	96.444	Macaca_nemestrina
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSMLEG00000033809	RC3H2	100	98.745	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0023516	Rc3h2	92	87.528	ENSMAMG00000009119	rc3h2	93	87.528	Mastacembelus_armatus
MGP_CAROLIEiJ_G0023516	Rc3h2	99	84.310	ENSMZEG00005017019	rc3h2	92	57.856	Maylandia_zebra
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.462	ENSMGAG00000007984	RC3H2	100	88.117	Meleagris_gallopavo
MGP_CAROLIEiJ_G0023516	Rc3h2	95	84.768	ENSMAUG00000003117	Rc3h2	95	85.554	Mesocricetus_auratus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.326	ENSMICG00000003227	RC3H2	100	98.326	Microcebus_murinus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.779	ENSMOCG00000009592	Rc3h2	100	94.276	Microtus_ochrogaster
MGP_CAROLIEiJ_G0023516	Rc3h2	96	85.996	ENSMMOG00000021305	rc3h2	97	86.534	Mola_mola
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSMODG00000019725	RC3H2	79	90.196	Monodelphis_domestica
MGP_CAROLIEiJ_G0023516	Rc3h2	92	86.364	ENSMALG00000017885	rc3h2	92	86.364	Monopterus_albus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	99.582	ENSMUSG00000075376	Rc3h2	100	99.582	Mus_musculus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	100.000	MGP_PahariEiJ_G0024969	Rc3h2	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0023516	Rc3h2	100	99.791	MGP_SPRETEiJ_G0024436	Rc3h2	100	99.791	Mus_spretus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSMPUG00000014141	RC3H2	100	93.356	Mustela_putorius_furo
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.338	ENSMLUG00000013992	RC3H2	100	92.269	Myotis_lucifugus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	96.234	ENSNGAG00000009763	-	100	96.234	Nannospalax_galili
MGP_CAROLIEiJ_G0023516	Rc3h2	99	84.310	ENSNBRG00000009276	rc3h2	92	57.856	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSNLEG00000017204	RC3H2	100	98.745	Nomascus_leucogenys
MGP_CAROLIEiJ_G0023516	Rc3h2	63	99.209	ENSMEUG00000001299	-	64	99.209	Notamacropus_eugenii
MGP_CAROLIEiJ_G0023516	Rc3h2	79	98.138	ENSOPRG00000000135	RC3H2	91	91.255	Ochotona_princeps
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSODEG00000005918	-	100	98.536	Octodon_degus
MGP_CAROLIEiJ_G0023516	Rc3h2	99	84.310	ENSONIG00000003945	rc3h2	100	58.296	Oreochromis_niloticus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSOANG00000008194	RC3H2	100	89.630	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSOCUG00000008804	RC3H2	100	93.603	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0023516	Rc3h2	94	87.361	ENSORLG00000010018	rc3h2	92	56.947	Oryzias_latipes
MGP_CAROLIEiJ_G0023516	Rc3h2	94	87.361	ENSORLG00020013257	rc3h2	92	57.038	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0023516	Rc3h2	94	87.361	ENSORLG00015001525	rc3h2	92	56.947	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0023516	Rc3h2	94	87.361	ENSOMEG00000023540	rc3h2	93	57.195	Oryzias_melastigma
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSOGAG00000010678	RC3H2	100	93.115	Otolemur_garnettii
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSOARG00000013965	RC3H2	100	92.779	Ovis_aries
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSPPAG00000036013	RC3H2	100	98.536	Pan_paniscus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSPPRG00000008698	RC3H2	100	93.451	Panthera_pardus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSPTIG00000014257	RC3H2	100	93.451	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSPTRG00000021339	RC3H2	100	98.536	Pan_troglodytes
MGP_CAROLIEiJ_G0023516	Rc3h2	100	94.561	ENSPANG00000025840	RC3H2	100	94.561	Papio_anubis
MGP_CAROLIEiJ_G0023516	Rc3h2	95	89.183	ENSPKIG00000021910	rc3h2	91	61.783	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSPSIG00000005393	RC3H2	100	88.097	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0023516	Rc3h2	93	86.682	ENSPMGG00000023963	rc3h2	94	86.682	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.779	ENSPEMG00000023441	Rc3h2	100	94.529	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSPCIG00000025559	RC3H2	100	89.950	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.283	ENSPFOG00000019699	rc3h2	94	59.897	Poecilia_formosa
MGP_CAROLIEiJ_G0023516	Rc3h2	95	85.841	ENSPLAG00000005799	rc3h2	95	64.016	Poecilia_latipinna
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.283	ENSPMEG00000014187	rc3h2	93	56.164	Poecilia_mexicana
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.283	ENSPREG00000008979	rc3h2	92	55.799	Poecilia_reticulata
MGP_CAROLIEiJ_G0023516	Rc3h2	86	87.747	ENSPCAG00000010154	RC3H2	86	87.747	Procavia_capensis
MGP_CAROLIEiJ_G0023516	Rc3h2	99	82.077	ENSPNYG00000012063	rc3h2	92	57.181	Pundamilia_nyererei
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.504	ENSPNAG00000017502	rc3h2	91	56.513	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0023516	Rc3h2	100	96.293	ENSRNOG00000009196	Rc3h2	100	96.293	Rattus_norvegicus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSRBIG00000032579	RC3H2	100	98.745	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSRROG00000043784	RC3H2	100	98.745	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSSBOG00000029100	RC3H2	100	98.536	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.117	ENSSHAG00000007498	RC3H2	100	89.799	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0023516	Rc3h2	92	90.023	ENSSFOG00015000964	rc3h2	91	90.023	Scleropages_formosus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	86.283	ENSSMAG00000020048	rc3h2	93	57.169	Scophthalmus_maximus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	87.168	ENSSDUG00000016022	rc3h2	93	57.772	Seriola_dumerili
MGP_CAROLIEiJ_G0023516	Rc3h2	95	87.168	ENSSLDG00000016070	rc3h2	93	57.592	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.338	ENSSARG00000012329	RC3H2	100	91.436	Sorex_araneus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	97.788	ENSSPUG00000001457	RC3H2	100	85.452	Sphenodon_punctatus
MGP_CAROLIEiJ_G0023516	Rc3h2	96	86.304	ENSSPAG00000005233	rc3h2	93	57.168	Stegastes_partitus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.536	ENSSSCG00000005575	RC3H2	98	98.536	Sus_scrofa
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSTGUG00000006889	-	100	88.265	Taeniopygia_guttata
MGP_CAROLIEiJ_G0023516	Rc3h2	92	86.199	ENSTRUG00000003364	rc3h2	100	86.199	Takifugu_rubripes
MGP_CAROLIEiJ_G0023516	Rc3h2	96	83.080	ENSTNIG00000004942	rc3h2	96	59.728	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.013	ENSTBEG00000009622	RC3H2	86	100.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0023516	Rc3h2	95	98.896	ENSTTRG00000016954	RC3H2	94	96.671	Tursiops_truncatus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSUAMG00000015355	RC3H2	100	93.776	Ursus_americanus
MGP_CAROLIEiJ_G0023516	Rc3h2	100	98.745	ENSUMAG00000003161	RC3H2	100	98.745	Ursus_maritimus
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.338	ENSVPAG00000005994	RC3H2	100	93.031	Vicugna_pacos
MGP_CAROLIEiJ_G0023516	Rc3h2	95	99.558	ENSVVUG00000009519	RC3H2	100	93.272	Vulpes_vulpes
MGP_CAROLIEiJ_G0023516	Rc3h2	94	86.414	ENSXCOG00000005002	rc3h2	99	84.165	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0023516	Rc3h2	94	86.860	ENSXMAG00000001724	rc3h2	91	56.422	Xiphophorus_maculatus