EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0023555 (Gene tree)
Gene ID: 110284595
Gene Symbol: Rif1
Alias: 5730435J01Rik|6530403D07Rik|D2Ertd145e
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 48870 bases
Position: chr2:47388604-47437473
Accession: 110284595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0051746	Rif1_N	PF12231.8	8.2e-73	1	1
MGP_CAROLIEiJ_P0051748	Rif1_N	PF12231.8	8.2e-73	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0051754	-	2771	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051750	-	2840	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051746	-	8453	XM_021150381	MGP_CAROLIEiJ_P0051746	2412 (aa)	XP_021006040	-
MGP_CAROLIEiJ_T0051752	-	3556	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051753	-	3832	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051749	-	307	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0051748	-	8448	XM_021150360	MGP_CAROLIEiJ_P0051748	2412 (aa)	XP_021006019	-
MGP_CAROLIEiJ_T0051747	-	7256	-	MGP_CAROLIEiJ_P0051747	2405 (aa)	-	UPI000A31564B
MGP_CAROLIEiJ_T0051751	-	841	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0023555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0023555's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0023555	Rif1	100	69.302	ENSG00000080345	RIF1	97	84.915	Homo_sapiens
MGP_CAROLIEiJ_G0023555	Rif1	100	69.496	ENSAMEG00000008461	RIF1	100	69.496	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0023555	Rif1	66	49.427	ENSACIG00000017765	rif1	70	49.274	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0023555	Rif1	52	49.484	ENSAOCG00000017231	rif1	50	47.795	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0023555	Rif1	72	54.501	ENSAPEG00000013228	rif1	65	53.656	Amphiprion_percula
MGP_CAROLIEiJ_G0023555	Rif1	53	48.331	ENSATEG00000022887	rif1	56	47.018	Anabas_testudineus
MGP_CAROLIEiJ_G0023555	Rif1	86	64.706	ENSAPLG00000007092	RIF1	92	64.706	Anas_platyrhynchos
MGP_CAROLIEiJ_G0023555	Rif1	86	57.186	ENSACAG00000003714	RIF1	91	57.186	Anolis_carolinensis
MGP_CAROLIEiJ_G0023555	Rif1	100	68.815	ENSANAG00000024840	RIF1	99	68.735	Aotus_nancymaae
MGP_CAROLIEiJ_G0023555	Rif1	52	50.626	ENSAMXG00000010910	rif1	65	50.737	Astyanax_mexicanus
MGP_CAROLIEiJ_G0023555	Rif1	94	68.632	ENSBTAG00000021020	RIF1	99	68.747	Bos_taurus
MGP_CAROLIEiJ_G0023555	Rif1	100	68.510	ENSCJAG00000003138	RIF1	99	68.470	Callithrix_jacchus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.216	ENSCAFG00000005670	RIF1	97	67.310	Canis_familiaris
MGP_CAROLIEiJ_G0023555	Rif1	100	67.901	ENSCAFG00020016401	RIF1	99	67.995	Canis_lupus_dingo
MGP_CAROLIEiJ_G0023555	Rif1	100	69.095	ENSCHIG00000020327	RIF1	99	69.042	Capra_hircus
MGP_CAROLIEiJ_G0023555	Rif1	97	81.720	ENSTSYG00000008861	RIF1	99	81.720	Carlito_syrichta
MGP_CAROLIEiJ_G0023555	Rif1	80	79.070	ENSCAPG00000008957	RIF1	99	79.070	Cavia_aperea
MGP_CAROLIEiJ_G0023555	Rif1	100	66.653	ENSCPOG00000037898	RIF1	99	66.653	Cavia_porcellus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.811	ENSCCAG00000024760	RIF1	99	67.730	Cebus_capucinus
MGP_CAROLIEiJ_G0023555	Rif1	100	69.625	ENSCATG00000033353	RIF1	99	69.544	Cercocebus_atys
MGP_CAROLIEiJ_G0023555	Rif1	96	67.212	ENSCLAG00000001517	RIF1	99	67.212	Chinchilla_lanigera
MGP_CAROLIEiJ_G0023555	Rif1	100	69.532	ENSCSAG00000016089	RIF1	99	69.451	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0023555	Rif1	97	71.304	ENSCHOG00000007187	RIF1	97	71.304	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0023555	Rif1	90	67.449	ENSCPBG00000025885	RIF1	95	68.622	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0023555	Rif1	100	68.173	ENSCANG00000028962	RIF1	100	68.634	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0023555	Rif1	100	79.754	ENSCGRG00001024589	Rif1	100	80.090	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0023555	Rif1	99	80.424	ENSCGRG00000010713	Rif1	100	80.764	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0023555	Rif1	52	48.374	ENSCSEG00000003945	rif1	54	48.316	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0023555	Rif1	65	47.951	ENSCVAG00000022479	rif1	67	48.212	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0023555	Rif1	99	67.260	ENSDNOG00000011194	RIF1	97	67.179	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0023555	Rif1	92	68.892	ENSETEG00000012421	RIF1	91	68.793	Echinops_telfairi
MGP_CAROLIEiJ_G0023555	Rif1	91	89.667	ENSEASG00005023434	RIF1	98	89.667	Equus_asinus_asinus
MGP_CAROLIEiJ_G0023555	Rif1	96	86.556	ENSECAG00000012679	RIF1	99	86.556	Equus_caballus
MGP_CAROLIEiJ_G0023555	Rif1	63	51.657	ENSELUG00000006826	rif1	55	50.996	Esox_lucius
MGP_CAROLIEiJ_G0023555	Rif1	100	67.593	ENSFCAG00000029742	RIF1	99	67.713	Felis_catus
MGP_CAROLIEiJ_G0023555	Rif1	79	61.631	ENSFALG00000013874	RIF1	91	61.631	Ficedula_albicollis
MGP_CAROLIEiJ_G0023555	Rif1	100	68.669	ENSFDAG00000006538	RIF1	99	68.588	Fukomys_damarensis
MGP_CAROLIEiJ_G0023555	Rif1	63	49.390	ENSFHEG00000013721	rif1	61	52.441	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0023555	Rif1	56	49.425	ENSGMOG00000003517	rif1	83	49.633	Gadus_morhua
MGP_CAROLIEiJ_G0023555	Rif1	80	57.289	ENSGALG00000012484	RIF1	92	57.289	Gallus_gallus
MGP_CAROLIEiJ_G0023555	Rif1	62	53.404	ENSGAFG00000017196	rif1	66	53.201	Gambusia_affinis
MGP_CAROLIEiJ_G0023555	Rif1	60	54.222	ENSGACG00000008579	rif1	66	51.600	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0023555	Rif1	90	66.765	ENSGAGG00000012595	RIF1	97	67.941	Gopherus_agassizii
MGP_CAROLIEiJ_G0023555	Rif1	89	86.390	ENSGGOG00000040178	RIF1	96	86.390	Gorilla_gorilla
MGP_CAROLIEiJ_G0023555	Rif1	51	51.843	ENSHBUG00000007125	rif1	54	51.522	Haplochromis_burtoni
MGP_CAROLIEiJ_G0023555	Rif1	94	67.764	ENSHGLG00100009807	RIF1	99	67.636	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0023555	Rif1	65	49.355	ENSHCOG00000015943	rif1	60	49.274	Hippocampus_comes
MGP_CAROLIEiJ_G0023555	Rif1	51	52.435	ENSIPUG00000021703	rif1	63	52.581	Ictalurus_punctatus
MGP_CAROLIEiJ_G0023555	Rif1	100	70.475	ENSSTOG00000020712	RIF1	99	70.475	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0023555	Rif1	99	69.092	ENSJJAG00000023000	Rif1	100	69.256	Jaculus_jaculus
MGP_CAROLIEiJ_G0023555	Rif1	62	52.896	ENSLBEG00000023196	rif1	55	52.896	Labrus_bergylta
MGP_CAROLIEiJ_G0023555	Rif1	66	61.337	ENSLACG00000005425	RIF1	63	61.532	Latimeria_chalumnae
MGP_CAROLIEiJ_G0023555	Rif1	63	54.006	ENSLOCG00000002657	rif1	82	50.321	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.859	ENSLAFG00000009796	RIF1	100	67.777	Loxodonta_africana
MGP_CAROLIEiJ_G0023555	Rif1	100	69.544	ENSMFAG00000032233	RIF1	99	69.463	Macaca_fascicularis
MGP_CAROLIEiJ_G0023555	Rif1	100	69.504	ENSMMUG00000008611	RIF1	99	69.423	Macaca_mulatta
MGP_CAROLIEiJ_G0023555	Rif1	100	69.585	ENSMNEG00000031616	RIF1	99	69.504	Macaca_nemestrina
MGP_CAROLIEiJ_G0023555	Rif1	100	69.706	ENSMLEG00000042945	RIF1	99	69.625	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0023555	Rif1	66	49.204	ENSMAMG00000001745	rif1	65	48.884	Mastacembelus_armatus
MGP_CAROLIEiJ_G0023555	Rif1	66	51.503	ENSMZEG00005020920	rif1	69	51.178	Maylandia_zebra
MGP_CAROLIEiJ_G0023555	Rif1	85	59.437	ENSMGAG00000012732	RIF1	91	59.943	Meleagris_gallopavo
MGP_CAROLIEiJ_G0023555	Rif1	95	95.822	ENSMAUG00000013158	Rif1	99	95.822	Mesocricetus_auratus
MGP_CAROLIEiJ_G0023555	Rif1	100	70.262	ENSMICG00000046127	RIF1	99	70.262	Microcebus_murinus
MGP_CAROLIEiJ_G0023555	Rif1	100	78.143	ENSMOCG00000009381	Rif1	100	78.143	Microtus_ochrogaster
MGP_CAROLIEiJ_G0023555	Rif1	64	49.476	ENSMMOG00000006519	rif1	64	48.413	Mola_mola
MGP_CAROLIEiJ_G0023555	Rif1	100	56.981	ENSMODG00000003703	RIF1	99	56.917	Monodelphis_domestica
MGP_CAROLIEiJ_G0023555	Rif1	61	51.656	ENSMALG00000016759	rif1	67	52.025	Monopterus_albus
MGP_CAROLIEiJ_G0023555	Rif1	100	95.136	ENSMUSG00000036202	Rif1	100	95.136	Mus_musculus
MGP_CAROLIEiJ_G0023555	Rif1	100	89.665	MGP_PahariEiJ_G0025006	Rif1	100	89.665	Mus_pahari
MGP_CAROLIEiJ_G0023555	Rif1	100	94.724	MGP_SPRETEiJ_G0024476	Rif1	100	94.724	Mus_spretus
MGP_CAROLIEiJ_G0023555	Rif1	100	68.385	ENSMPUG00000000371	RIF1	99	68.385	Mustela_putorius_furo
MGP_CAROLIEiJ_G0023555	Rif1	89	67.713	ENSMLUG00000003376	RIF1	100	67.713	Myotis_lucifugus
MGP_CAROLIEiJ_G0023555	Rif1	100	73.527	ENSNGAG00000009268	Rif1	99	73.527	Nannospalax_galili
MGP_CAROLIEiJ_G0023555	Rif1	63	51.138	ENSNBRG00000014257	rif1	66	50.813	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0023555	Rif1	100	67.751	ENSNLEG00000010955	RIF1	99	67.671	Nomascus_leucogenys
MGP_CAROLIEiJ_G0023555	Rif1	75	75.000	ENSMEUG00000007601	-	81	75.000	Notamacropus_eugenii
MGP_CAROLIEiJ_G0023555	Rif1	100	67.223	ENSODEG00000003950	RIF1	99	67.386	Octodon_degus
MGP_CAROLIEiJ_G0023555	Rif1	53	49.811	ENSONIG00000013657	rif1	61	49.773	Oreochromis_niloticus
MGP_CAROLIEiJ_G0023555	Rif1	73	73.446	ENSOANG00000006078	-	91	73.446	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.624	ENSOCUG00000017435	RIF1	99	67.624	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0023555	Rif1	64	47.554	ENSORLG00020001302	rif1	68	47.875	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0023555	Rif1	64	47.673	ENSORLG00015000009	rif1	67	47.833	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0023555	Rif1	64	48.701	ENSOMEG00000021513	rif1	68	48.629	Oryzias_melastigma
MGP_CAROLIEiJ_G0023555	Rif1	100	68.425	ENSOGAG00000006141	RIF1	99	68.425	Otolemur_garnettii
MGP_CAROLIEiJ_G0023555	Rif1	100	69.079	ENSOARG00000008930	RIF1	99	69.156	Ovis_aries
MGP_CAROLIEiJ_G0023555	Rif1	100	69.206	ENSPPAG00000023754	RIF1	99	69.125	Pan_paniscus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.524	ENSPPRG00000003618	RIF1	99	67.605	Panthera_pardus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.564	ENSPTIG00000020652	RIF1	99	67.645	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0023555	Rif1	100	69.327	ENSPTRG00000012534	RIF1	99	69.246	Pan_troglodytes
MGP_CAROLIEiJ_G0023555	Rif1	100	69.423	ENSPANG00000008525	RIF1	99	69.342	Papio_anubis
MGP_CAROLIEiJ_G0023555	Rif1	71	50.476	ENSPKIG00000004267	rif1	70	51.787	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0023555	Rif1	66	45.595	ENSPMGG00000016141	rif1	75	44.984	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0023555	Rif1	99	80.257	ENSPEMG00000000446	Rif1	99	80.132	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0023555	Rif1	75	58.938	ENSPCIG00000009185	RIF1	99	56.621	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0023555	Rif1	64	51.165	ENSPFOG00000017804	rif1	52	50.924	Poecilia_formosa
MGP_CAROLIEiJ_G0023555	Rif1	57	51.807	ENSPFOG00000000554	-	63	51.251	Poecilia_formosa
MGP_CAROLIEiJ_G0023555	Rif1	64	50.887	ENSPLAG00000017945	rif1	68	50.685	Poecilia_latipinna
MGP_CAROLIEiJ_G0023555	Rif1	65	50.549	ENSPREG00000018052	rif1	65	53.490	Poecilia_reticulata
MGP_CAROLIEiJ_G0023555	Rif1	100	69.221	ENSPPYG00000012846	RIF1	99	69.141	Pongo_abelii
MGP_CAROLIEiJ_G0023555	Rif1	82	79.612	ENSPCAG00000009032	RIF1	83	79.612	Procavia_capensis
MGP_CAROLIEiJ_G0023555	Rif1	100	70.676	ENSPCOG00000027888	RIF1	99	70.676	Propithecus_coquereli
MGP_CAROLIEiJ_G0023555	Rif1	93	83.570	ENSPVAG00000014276	RIF1	95	83.570	Pteropus_vampyrus
MGP_CAROLIEiJ_G0023555	Rif1	66	49.715	ENSPNYG00000012940	rif1	68	49.227	Pundamilia_nyererei
MGP_CAROLIEiJ_G0023555	Rif1	100	85.508	ENSRNOG00000054901	Rif1	100	85.467	Rattus_norvegicus
MGP_CAROLIEiJ_G0023555	Rif1	100	68.536	ENSRBIG00000003704	RIF1	99	68.334	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0023555	Rif1	100	69.383	ENSRROG00000028206	RIF1	99	69.302	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0023555	Rif1	97	83.871	ENSSBOG00000029530	RIF1	99	83.871	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0023555	Rif1	100	56.222	ENSSHAG00000018552	RIF1	100	55.478	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0023555	Rif1	64	53.150	ENSSFOG00015021539	rif1	72	51.660	Scleropages_formosus
MGP_CAROLIEiJ_G0023555	Rif1	57	49.908	ENSSMAG00000011704	rif1	61	48.249	Scophthalmus_maximus
MGP_CAROLIEiJ_G0023555	Rif1	64	50.040	ENSSDUG00000015632	rif1	68	49.051	Seriola_dumerili
MGP_CAROLIEiJ_G0023555	Rif1	59	78.840	ENSSARG00000007161	-	59	78.840	Sorex_araneus
MGP_CAROLIEiJ_G0023555	Rif1	87	69.254	ENSSPUG00000003062	RIF1	94	69.254	Sphenodon_punctatus
MGP_CAROLIEiJ_G0023555	Rif1	59	56.996	ENSSPAG00000018359	rif1	74	56.996	Stegastes_partitus
MGP_CAROLIEiJ_G0023555	Rif1	100	69.221	ENSSSCG00000016395	RIF1	99	69.141	Sus_scrofa
MGP_CAROLIEiJ_G0023555	Rif1	66	49.224	ENSTRUG00000015808	rif1	70	47.972	Takifugu_rubripes
MGP_CAROLIEiJ_G0023555	Rif1	66	51.282	ENSTNIG00000011538	rif1	69	51.282	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0023555	Rif1	82	84.076	ENSTBEG00000016082	RIF1	81	84.076	Tupaia_belangeri
MGP_CAROLIEiJ_G0023555	Rif1	100	69.923	ENSTTRG00000011190	RIF1	99	69.681	Tursiops_truncatus
MGP_CAROLIEiJ_G0023555	Rif1	86	82.202	ENSUAMG00000026385	RIF1	97	82.943	Ursus_americanus
MGP_CAROLIEiJ_G0023555	Rif1	97	82.229	ENSUMAG00000000337	RIF1	98	83.350	Ursus_maritimus
MGP_CAROLIEiJ_G0023555	Rif1	100	67.487	ENSVPAG00000002162	RIF1	99	67.460	Vicugna_pacos
MGP_CAROLIEiJ_G0023555	Rif1	100	68.045	ENSVVUG00000011293	RIF1	99	68.045	Vulpes_vulpes
MGP_CAROLIEiJ_G0023555	Rif1	73	43.851	ENSXETG00000004530	rif1	53	52.529	Xenopus_tropicalis
MGP_CAROLIEiJ_G0023555	Rif1	65	47.303	ENSXMAG00000000506	rif1	64	47.257	Xiphophorus_maculatus