EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024250 (Gene tree)
Gene ID: 110290448
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 33283 bases
Position: chr2:120034267-120067549
Accession: 110290448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0054416	ResIII	PF04851.15	3e-25	1	2
MGP_CAROLIEiJ_P0054416	ResIII	PF04851.15	3e-25	2	2
MGP_CAROLIEiJ_P0054416	DEAD	PF00270.29	3.9e-52	1	2
MGP_CAROLIEiJ_P0054416	DEAD	PF00270.29	3.9e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0054418	-	722	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0054419	-	743	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0054415	-	2916	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0054416	-	6745	XM_021156986	MGP_CAROLIEiJ_P0054416	2136 (aa)	XP_021012645	UPI000A314E15
MGP_CAROLIEiJ_T0054417	-	593	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024250's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024250's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0024250	Snrnp200	72	31.724	MGP_CAROLIEiJ_G0027496	Hfm1	55	31.724
MGP_CAROLIEiJ_G0024250	Snrnp200	86	41.812	MGP_CAROLIEiJ_G0015302	Ascc3	81	44.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSG00000144028	SNRNP200	100	99.625	Homo_sapiens
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.794	ENSAPOG00000010223	snrnp200	99	90.684	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSAMEG00000008996	SNRNP200	100	99.579	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024250	Snrnp200	97	90.150	ENSACIG00000001764	snrnp200	98	90.150	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.700	ENSAOCG00000024593	snrnp200	100	89.936	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0024250	Snrnp200	97	89.989	ENSAPEG00000012554	snrnp200	100	89.989	Amphiprion_percula
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.653	ENSATEG00000022522	snrnp200	99	90.543	Anabas_testudineus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	97.548	ENSAPLG00000004313	SNRNP200	100	97.548	Anas_platyrhynchos
MGP_CAROLIEiJ_G0024250	Snrnp200	99	97.264	ENSACAG00000000434	SNRNP200	100	97.264	Anolis_carolinensis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	95.014	ENSANAG00000036625	SNRNP200	100	95.522	Aotus_nancymaae
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.418	ENSACLG00000011188	snrnp200	99	90.309	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.512	ENSAMXG00000005684	snrnp200	99	90.403	Astyanax_mexicanus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.017	ENSBTAG00000000848	SNRNP200	100	99.017	Bos_taurus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSCJAG00000007514	SNRNP200	100	99.579	Callithrix_jacchus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.787	ENSCAFG00020019979	SNRNP200	100	99.767	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.204	ENSCHIG00000020611	SNRNP200	100	99.204	Capra_hircus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSTSYG00000010467	SNRNP200	100	99.625	Carlito_syrichta
MGP_CAROLIEiJ_G0024250	Snrnp200	99	99.248	ENSCAPG00000017234	SNRNP200	99	99.248	Cavia_aperea
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	ENSCPOG00000006776	SNRNP200	100	99.532	Cavia_porcellus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSCCAG00000033962	SNRNP200	100	99.579	Cebus_capucinus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSCATG00000015790	SNRNP200	100	99.625	Cercocebus_atys
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.391	ENSCLAG00000004116	SNRNP200	100	99.391	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSCSAG00000017369	SNRNP200	100	99.579	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024250	Snrnp200	75	98.802	ENSCHOG00000012981	-	59	98.802	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.475	ENSCPBG00000022571	SNRNP200	100	97.475	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0024250	Snrnp200	99	76.553	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	94.162	ENSCANG00000033932	SNRNP200	100	99.602	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.766	ENSCGRG00001022610	Snrnp200	100	99.766	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.205	ENSCGRG00000016472	Snrnp200	100	99.205	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024250	Snrnp200	100	89.794	ENSCSEG00000016399	snrnp200	100	89.794	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	85.534	ENSCVAG00000017631	snrnp200	99	85.534	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.262	ENSDARG00000077536	snrnp200	99	90.262	Danio_rerio
MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.987	ENSDNOG00000011227	SNRNP200	100	97.987	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.008	ENSDORG00000005861	Snrnp200	100	97.008	Dipodomys_ordii
MGP_CAROLIEiJ_G0024250	Snrnp200	100	74.255	FBgn0263599	l(3)72Ab	99	74.162	Drosophila_melanogaster
MGP_CAROLIEiJ_G0024250	Snrnp200	95	99.311	ENSETEG00000000162	SNRNP200	74	99.311	Echinops_telfairi
MGP_CAROLIEiJ_G0024250	Snrnp200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.555	ENSEASG00005001884	SNRNP200	100	98.555	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.672	ENSECAG00000019675	SNRNP200	100	99.672	Equus_caballus
MGP_CAROLIEiJ_G0024250	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.841	ENSELUG00000018948	snrnp200	99	90.730	Esox_lucius
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSFCAG00000010699	SNRNP200	100	99.625	Felis_catus
MGP_CAROLIEiJ_G0024250	Snrnp200	95	89.889	ENSFALG00000001368	-	95	91.964	Ficedula_albicollis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.345	ENSFDAG00000004683	SNRNP200	100	99.345	Fukomys_damarensis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	87.687	ENSFHEG00000003786	snrnp200	99	87.687	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	89.673	ENSGMOG00000004881	snrnp200	99	89.626	Gadus_morhua
MGP_CAROLIEiJ_G0024250	Snrnp200	100	87.921	ENSGAFG00000010807	snrnp200	99	87.921	Gambusia_affinis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	89.911	ENSGACG00000011474	snrnp200	99	89.818	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0024250	Snrnp200	95	97.481	ENSGAGG00000016069	SNRNP200	99	97.481	Gopherus_agassizii
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSGGOG00000005174	SNRNP200	100	99.625	Gorilla_gorilla
MGP_CAROLIEiJ_G0024250	Snrnp200	97	87.673	ENSHBUG00000011322	snrnp200	99	87.720	Haplochromis_burtoni
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.438	ENSHGLG00000006654	SNRNP200	100	99.438	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.438	ENSHGLG00100018594	SNRNP200	100	99.438	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSSTOG00000016351	SNRNP200	100	99.579	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	ENSJJAG00000023659	Snrnp200	100	99.532	Jaculus_jaculus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	87.448	ENSKMAG00000003665	snrnp200	99	87.448	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.169	ENSLBEG00000021585	snrnp200	99	90.169	Labrus_bergylta
MGP_CAROLIEiJ_G0024250	Snrnp200	82	94.664	ENSLACG00000000226	SNRNP200	99	94.664	Latimeria_chalumnae
MGP_CAROLIEiJ_G0024250	Snrnp200	100	91.994	ENSLOCG00000015198	snrnp200	99	91.994	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.298	ENSLAFG00000015626	SNRNP200	100	99.298	Loxodonta_africana
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSMFAG00000040174	SNRNP200	100	99.579	Macaca_fascicularis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSMMUG00000023261	SNRNP200	100	99.579	Macaca_mulatta
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	ENSMNEG00000032398	SNRNP200	100	99.532	Macaca_nemestrina
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSMLEG00000019083	SNRNP200	100	99.625	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.126	ENSMAMG00000007851	snrnp200	99	90.080	Mastacembelus_armatus
MGP_CAROLIEiJ_G0024250	Snrnp200	97	87.673	ENSMZEG00005010787	snrnp200	99	87.720	Maylandia_zebra
MGP_CAROLIEiJ_G0024250	Snrnp200	97	97.097	ENSMGAG00000001831	SNRNP200	100	97.097	Meleagris_gallopavo
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.813	ENSMAUG00000011825	Snrnp200	100	99.813	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSMICG00000004710	SNRNP200	100	99.579	Microcebus_murinus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.238	ENSMOCG00000011814	Snrnp200	100	97.238	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024250	Snrnp200	99	88.915	ENSMMOG00000014167	snrnp200	99	88.811	Mola_mola
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.689	ENSMODG00000008475	SNRNP200	100	98.689	Monodelphis_domestica
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.653	ENSMALG00000001973	snrnp200	99	90.543	Monopterus_albus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.953	ENSMUSG00000003660	Snrnp200	100	99.953	Mus_musculus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.906	MGP_PahariEiJ_G0025695	Snrnp200	100	99.906	Mus_pahari
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.953	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.953	Mus_spretus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	ENSMPUG00000008949	SNRNP200	100	99.532	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.878	ENSMLUG00000010493	SNRNP200	100	98.878	Myotis_lucifugus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	95.178	ENSMLUG00000027511	-	100	95.178	Myotis_lucifugus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.719	ENSNGAG00000021993	Snrnp200	100	99.719	Nannospalax_galili
MGP_CAROLIEiJ_G0024250	Snrnp200	90	90.203	ENSNBRG00000017960	snrnp200	98	90.255	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0024250	Snrnp200	100	94.979	ENSNLEG00000000025	SNRNP200	100	94.979	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024250	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
MGP_CAROLIEiJ_G0024250	Snrnp200	100	95.693	ENSOPRG00000015464	SNRNP200	100	95.693	Ochotona_princeps
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.391	ENSODEG00000008366	SNRNP200	100	99.391	Octodon_degus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.418	ENSONIG00000010714	snrnp200	99	90.309	Oreochromis_niloticus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.485	ENSOCUG00000009864	SNRNP200	100	99.485	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.215	ENSORLG00000012286	snrnp200	100	90.215	Oryzias_latipes
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.262	ENSORLG00020004648	snrnp200	100	90.262	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.215	ENSORLG00015019114	snrnp200	100	90.236	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.465	ENSOMEG00000011834	snrnp200	99	90.356	Oryzias_melastigma
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSOGAG00000006879	SNRNP200	100	99.625	Otolemur_garnettii
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.175	ENSOARG00000013949	SNRNP200	100	98.175	Ovis_aries
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSPPAG00000041559	SNRNP200	100	99.625	Pan_paniscus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSPPRG00000004435	SNRNP200	100	99.625	Panthera_pardus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.157	ENSPTIG00000006380	SNRNP200	100	99.157	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSPTRG00000012230	SNRNP200	100	99.625	Pan_troglodytes
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSPANG00000006017	SNRNP200	100	99.579	Papio_anubis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	91.011	ENSPKIG00000014762	snrnp200	99	91.011	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0024250	Snrnp200	100	96.444	ENSPSIG00000008580	SNRNP200	100	96.444	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.689	ENSPCIG00000023050	SNRNP200	100	98.689	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.267	ENSPFOG00000015110	snrnp200	99	90.267	Poecilia_formosa
MGP_CAROLIEiJ_G0024250	Snrnp200	97	90.165	ENSPLAG00000006711	snrnp200	99	90.165	Poecilia_latipinna
MGP_CAROLIEiJ_G0024250	Snrnp200	97	90.110	ENSPMEG00000021166	snrnp200	99	90.110	Poecilia_mexicana
MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.356	ENSPREG00000008875	snrnp200	99	90.356	Poecilia_reticulata
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSPPYG00000012068	SNRNP200	100	99.625	Pongo_abelii
MGP_CAROLIEiJ_G0024250	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSPCOG00000024608	SNRNP200	100	99.625	Propithecus_coquereli
MGP_CAROLIEiJ_G0024250	Snrnp200	96	99.320	ENSPVAG00000005860	SNRNP200	93	99.320	Pteropus_vampyrus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	85.902	ENSPNYG00000017476	snrnp200	99	85.808	Pundamilia_nyererei
MGP_CAROLIEiJ_G0024250	Snrnp200	100	86.002	ENSPNAG00000010998	snrnp200	99	86.002	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.813	ENSRNOG00000012157	Snrnp200	100	99.813	Rattus_norvegicus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSRBIG00000044690	-	100	99.625	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSRROG00000037952	-	100	99.625	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.579	ENSSBOG00000035471	SNRNP200	100	99.579	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024250	Snrnp200	97	98.597	ENSSHAG00000000758	SNRNP200	100	98.597	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0024250	Snrnp200	99	91.592	ENSSFOG00015018826	snrnp200	99	91.479	Scleropages_formosus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.371	ENSSMAG00000005463	snrnp200	99	90.262	Scophthalmus_maximus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.653	ENSSDUG00000021410	snrnp200	99	90.543	Seriola_dumerili
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.606	ENSSLDG00000010884	snrnp200	99	90.496	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0024250	Snrnp200	95	98.123	ENSSARG00000010728	SNRNP200	96	98.123	Sorex_araneus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	97.238	ENSSPUG00000003726	-	100	97.238	Sphenodon_punctatus
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.700	ENSSPAG00000001842	snrnp200	99	90.590	Stegastes_partitus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.438	ENSSSCG00000008127	SNRNP200	100	99.438	Sus_scrofa
MGP_CAROLIEiJ_G0024250	Snrnp200	99	87.730	ENSTGUG00000014475	-	100	87.730	Taeniopygia_guttata
MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.324	ENSTRUG00000001307	snrnp200	99	90.215	Takifugu_rubripes
MGP_CAROLIEiJ_G0024250	Snrnp200	100	85.791	ENSTNIG00000004320	snrnp200	100	85.791	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0024250	Snrnp200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.251	ENSTTRG00000004983	SNRNP200	100	99.251	Tursiops_truncatus
MGP_CAROLIEiJ_G0024250	Snrnp200	75	92.636	ENSUAMG00000008395	-	95	92.636	Ursus_americanus
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.625	ENSUMAG00000012385	SNRNP200	100	99.625	Ursus_maritimus
MGP_CAROLIEiJ_G0024250	Snrnp200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.393	ENSVVUG00000026247	SNRNP200	100	99.393	Vulpes_vulpes
MGP_CAROLIEiJ_G0024250	Snrnp200	100	94.296	ENSXETG00000001243	snrnp200	100	94.296	Xenopus_tropicalis
MGP_CAROLIEiJ_G0024250	Snrnp200	97	90.364	ENSXMAG00000002058	snrnp200	98	90.364	Xiphophorus_maculatus