EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024251 (Gene tree)
Gene ID: 110285156
Gene Symbol: Ciao1
Alias: Wdr39
Full Name: cytosolic iron-sulfur assembly component 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 5570 bases
Position: chr2:120070329-120075898
Accession: 110285156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0054423	eIF2A	PF08662.11	0.00028	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0054424	-	409	-	MGP_CAROLIEiJ_P0054424	51 (aa)	-	UPI00021CF721
MGP_CAROLIEiJ_T0054421	-	1114	-	MGP_CAROLIEiJ_P0054421	233 (aa)	-	UPI00021CF71F
MGP_CAROLIEiJ_T0054420	-	3022	-	MGP_CAROLIEiJ_P0054420	339 (aa)	XP_021006805	UPI0000020D77
MGP_CAROLIEiJ_T0054423	-	531	-	MGP_CAROLIEiJ_P0054423	176 (aa)	-	-
MGP_CAROLIEiJ_T0054422	-	581	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024251's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024251's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0024251	Ciao1	80	36.364	MGP_CAROLIEiJ_G0032617	Poc1a	80	36.364
MGP_CAROLIEiJ_G0024251	Ciao1	82	34.058	MGP_CAROLIEiJ_G0020710	Wdr5b	84	34.058
MGP_CAROLIEiJ_G0024251	Ciao1	89	36.735	MGP_CAROLIEiJ_G0023343	Wdr5	89	36.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024251	Ciao1	96	62.874	ENSCING00000006781	-	99	62.874	Ciona_intestinalis
MGP_CAROLIEiJ_G0024251	Ciao1	96	61.677	ENSCSAVG00000003355	-	99	61.677	Ciona_savignyi
MGP_CAROLIEiJ_G0024251	Ciao1	99	97.143	ENSCGRG00001016622	Ciao1	99	97.143	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024251	Ciao1	94	79.518	ENSMZEG00005010812	ciao1	100	79.518	Maylandia_zebra
MGP_CAROLIEiJ_G0024251	Ciao1	99	97.714	ENSMAUG00000021994	Ciao1	99	97.714	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024251	Ciao1	100	96.591	ENSMOCG00000009518	Ciao1	99	96.591	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024251	Ciao1	94	82.530	ENSMALG00000002097	ciao1	99	82.530	Monopterus_albus
MGP_CAROLIEiJ_G0024251	Ciao1	100	99.432	ENSMUSG00000003662	Ciao1	100	99.432	Mus_musculus
MGP_CAROLIEiJ_G0024251	Ciao1	100	97.727	MGP_PahariEiJ_G0025696	Ciao1	100	97.727	Mus_pahari
MGP_CAROLIEiJ_G0024251	Ciao1	100	99.432	MGP_SPRETEiJ_G0025171	Ciao1	100	99.432	Mus_spretus
MGP_CAROLIEiJ_G0024251	Ciao1	99	97.143	ENSPEMG00000015800	Ciao1	99	97.143	Peromyscus_maniculatus_bairdii