EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024276 (Gene tree)
Gene ID: 110289833
Gene Symbol: Zc3h8
Alias: E130108N08Rik|Fliz1
Full Name: zinc finger CCCH-type containing 8
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 18270 bases
Position: chr2:121758662-121776931
Accession: 110289833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0054518	zf-CCCH	PF00642.24	1.4e-10	1	2
MGP_CAROLIEiJ_P0054518	zf-CCCH	PF00642.24	1.4e-10	2	2
MGP_CAROLIEiJ_P0054518	zf-CCCH_2	PF14608.6	2.4e-05	1	3
MGP_CAROLIEiJ_P0054518	zf-CCCH_2	PF14608.6	2.4e-05	2	3
MGP_CAROLIEiJ_P0054518	zf-CCCH_2	PF14608.6	2.4e-05	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0054518	-	1636	XM_021156231	MGP_CAROLIEiJ_P0054518	305 (aa)	XP_021011890	UPI000A3171A6

Gene Model

Click here to download MGP_CAROLIEiJ_G0024276's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024276's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024276	Zc3h8	100	75.082	ENSG00000144161	ZC3H8	100	75.082	Homo_sapiens
MGP_CAROLIEiJ_G0024276	Zc3h8	81	77.236	ENSAMEG00000016207	ZC3H8	99	77.236	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024276	Zc3h8	100	71.895	ENSANAG00000022151	ZC3H8	100	71.895	Aotus_nancymaae
MGP_CAROLIEiJ_G0024276	Zc3h8	99	71.711	ENSBTAG00000015965	ZC3H8	99	71.711	Bos_taurus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	71.895	ENSCJAG00000040629	ZC3H8	100	71.895	Callithrix_jacchus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	76.645	ENSCAFG00000007155	ZC3H8	77	76.645	Canis_familiaris
MGP_CAROLIEiJ_G0024276	Zc3h8	99	76.645	ENSCAFG00020017540	ZC3H8	92	76.645	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024276	Zc3h8	99	68.690	ENSCHIG00000012152	ZC3H8	99	68.690	Capra_hircus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	77.961	ENSTSYG00000006668	ZC3H8	99	77.961	Carlito_syrichta
MGP_CAROLIEiJ_G0024276	Zc3h8	91	71.583	ENSCPOG00000008258	ZC3H8	99	71.583	Cavia_porcellus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	69.508	ENSCCAG00000034286	-	100	69.508	Cebus_capucinus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	71.569	ENSCCAG00000019771	-	100	71.569	Cebus_capucinus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.443	ENSCATG00000031295	ZC3H8	100	74.510	Cercocebus_atys
MGP_CAROLIEiJ_G0024276	Zc3h8	100	71.242	ENSCLAG00000006848	ZC3H8	100	71.242	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024276	Zc3h8	85	71.815	ENSCSAG00000016801	ZC3H8	98	73.077	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024276	Zc3h8	90	63.406	ENSCHOG00000010391	ZC3H8	98	63.406	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0024276	Zc3h8	100	56.731	ENSCANG00000014691	ZC3H8	100	53.526	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	88.889	ENSCGRG00001018353	Zc3h8	100	88.889	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024276	Zc3h8	100	88.889	ENSCGRG00000016191	Zc3h8	100	88.889	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024276	Zc3h8	100	72.876	ENSDORG00000029341	Zc3h8	100	72.876	Dipodomys_ordii
MGP_CAROLIEiJ_G0024276	Zc3h8	100	54.545	ENSETEG00000016560	ZC3H8	100	54.870	Echinops_telfairi
MGP_CAROLIEiJ_G0024276	Zc3h8	99	75.987	ENSEASG00005006490	ZC3H8	99	76.645	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	75.658	ENSECAG00000022765	ZC3H8	99	76.316	Equus_caballus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	68.525	ENSEEUG00000006984	ZC3H8	99	68.525	Erinaceus_europaeus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	73.226	ENSFCAG00000008088	ZC3H8	99	73.871	Felis_catus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.203	ENSFDAG00000001021	ZC3H8	100	73.203	Fukomys_damarensis
MGP_CAROLIEiJ_G0024276	Zc3h8	100	74.426	ENSGGOG00000009004	ZC3H8	100	74.426	Gorilla_gorilla
MGP_CAROLIEiJ_G0024276	Zc3h8	100	70.288	ENSHGLG00000008367	ZC3H8	100	70.288	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024276	Zc3h8	55	78.698	ENSHGLG00100017277	-	100	78.698	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024276	Zc3h8	100	76.797	ENSSTOG00000006347	ZC3H8	100	76.797	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	74.342	ENSLAFG00000004675	ZC3H8	99	74.342	Loxodonta_africana
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.770	ENSMFAG00000031522	ZC3H8	100	74.837	Macaca_fascicularis
MGP_CAROLIEiJ_G0024276	Zc3h8	100	74.098	ENSMMUG00000044163	ZC3H8	100	75.163	Macaca_mulatta
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.770	ENSMNEG00000034502	ZC3H8	100	74.837	Macaca_nemestrina
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.115	ENSMLEG00000029980	ZC3H8	100	74.183	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	87.582	ENSMAUG00000012509	Zc3h8	100	87.582	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	78.105	ENSMICG00000045551	ZC3H8	100	78.758	Microcebus_murinus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	86.557	ENSMOCG00000015035	Zc3h8	100	86.557	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024276	Zc3h8	100	97.705	ENSMUSG00000027387	Zc3h8	100	97.705	Mus_musculus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	97.049	MGP_PahariEiJ_G0025721	Zc3h8	100	97.049	Mus_pahari
MGP_CAROLIEiJ_G0024276	Zc3h8	100	97.705	MGP_SPRETEiJ_G0025196	Zc3h8	100	97.705	Mus_spretus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	75.806	ENSMPUG00000009562	ZC3H8	99	75.806	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024276	Zc3h8	90	68.929	ENSMLUG00000004890	ZC3H8	100	69.504	Myotis_lucifugus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	83.660	ENSNGAG00000010427	Zc3h8	100	83.660	Nannospalax_galili
MGP_CAROLIEiJ_G0024276	Zc3h8	100	76.393	ENSNLEG00000001619	ZC3H8	100	76.393	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024276	Zc3h8	90	68.364	ENSOPRG00000011183	ZC3H8	99	68.364	Ochotona_princeps
MGP_CAROLIEiJ_G0024276	Zc3h8	100	71.895	ENSODEG00000006594	ZC3H8	100	71.895	Octodon_degus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	73.597	ENSOCUG00000011253	ZC3H8	88	73.597	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	72.756	ENSOGAG00000002554	ZC3H8	100	72.756	Otolemur_garnettii
MGP_CAROLIEiJ_G0024276	Zc3h8	99	73.026	ENSOARG00000014475	ZC3H8	99	73.026	Ovis_aries
MGP_CAROLIEiJ_G0024276	Zc3h8	100	74.754	ENSPPAG00000028071	ZC3H8	100	74.754	Pan_paniscus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	73.548	ENSPPRG00000005648	ZC3H8	99	74.194	Panthera_pardus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	73.548	ENSPTIG00000016697	ZC3H8	99	74.194	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024276	Zc3h8	100	74.754	ENSPTRG00000012362	ZC3H8	100	74.754	Pan_troglodytes
MGP_CAROLIEiJ_G0024276	Zc3h8	100	73.443	ENSPANG00000016995	ZC3H8	100	74.510	Papio_anubis
MGP_CAROLIEiJ_G0024276	Zc3h8	97	84.641	ENSPEMG00000011068	Zc3h8	97	84.641	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024276	Zc3h8	99	74.671	ENSPPYG00000012165	ZC3H8	99	74.671	Pongo_abelii
MGP_CAROLIEiJ_G0024276	Zc3h8	100	57.190	ENSPCAG00000015426	ZC3H8	100	57.190	Procavia_capensis
MGP_CAROLIEiJ_G0024276	Zc3h8	100	79.085	ENSPCOG00000021690	ZC3H8	100	79.085	Propithecus_coquereli
MGP_CAROLIEiJ_G0024276	Zc3h8	74	78.107	ENSPVAG00000003510	ZC3H8	76	78.107	Pteropus_vampyrus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	90.164	ENSRNOG00000017647	Zc3h8	100	90.164	Rattus_norvegicus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	74.837	ENSRBIG00000027345	ZC3H8	100	74.837	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024276	Zc3h8	100	75.163	ENSRROG00000039459	ZC3H8	100	75.163	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024276	Zc3h8	100	68.910	ENSSBOG00000028167	ZC3H8	100	68.910	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024276	Zc3h8	91	67.384	ENSSARG00000012883	ZC3H8	99	67.384	Sorex_araneus
MGP_CAROLIEiJ_G0024276	Zc3h8	85	73.282	ENSSSCG00000008099	ZC3H8	97	73.664	Sus_scrofa
MGP_CAROLIEiJ_G0024276	Zc3h8	59	80.000	ENSTBEG00000015547	-	68	80.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0024276	Zc3h8	85	75.285	ENSTTRG00000013153	ZC3H8	85	75.285	Tursiops_truncatus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	76.974	ENSUAMG00000002411	ZC3H8	99	76.974	Ursus_americanus
MGP_CAROLIEiJ_G0024276	Zc3h8	99	77.961	ENSUMAG00000008665	ZC3H8	99	77.961	Ursus_maritimus
MGP_CAROLIEiJ_G0024276	Zc3h8	100	75.817	ENSVPAG00000005911	ZC3H8	100	76.797	Vicugna_pacos
MGP_CAROLIEiJ_G0024276	Zc3h8	99	76.316	ENSVVUG00000028659	ZC3H8	99	76.316	Vulpes_vulpes