EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024278 (Gene tree)
Gene ID: 110290414
Gene Symbol: Zc3h6
Alias: 4631426G04Rik|4833425H18Rik
Full Name: zinc finger CCCH type containing 6
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 54329 bases
Position: chr2:121795579-121849907
Accession: 1926001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0054520	zf-CCCH	PF00642.24	2.7e-11	1	2
MGP_CAROLIEiJ_P0054520	zf-CCCH	PF00642.24	2.7e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0054520	-	4883	-	MGP_CAROLIEiJ_P0054520	1172 (aa)	-	-
MGP_CAROLIEiJ_T0054521	-	1477	-	MGP_CAROLIEiJ_P0054521	151 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024278's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024278's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.238	ENSG00000188177	ZC3H6	100	76.154	Homo_sapiens
MGP_CAROLIEiJ_G0024278	Zc3h6	60	66.667	ENSAPOG00000002681	zc3h6	90	41.815	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	72.796	ENSAMEG00000016194	ZC3H6	100	72.017	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024278	Zc3h6	65	66.321	ENSACIG00000021843	zc3h6	89	42.601	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	66.667	ENSAOCG00000004039	zc3h6	90	41.682	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0024278	Zc3h6	60	66.667	ENSAPEG00000014561	zc3h6	90	43.580	Amphiprion_percula
MGP_CAROLIEiJ_G0024278	Zc3h6	79	40.381	ENSATEG00000019063	zc3h6	90	43.431	Anabas_testudineus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	56.307	ENSAPLG00000014287	ZC3H6	99	57.107	Anas_platyrhynchos
MGP_CAROLIEiJ_G0024278	Zc3h6	100	75.755	ENSANAG00000024229	ZC3H6	100	75.419	Aotus_nancymaae
MGP_CAROLIEiJ_G0024278	Zc3h6	100	75.923	ENSCJAG00000016479	ZC3H6	100	75.587	Callithrix_jacchus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	73.109	ENSCAFG00000007160	ZC3H6	100	71.657	Canis_familiaris
MGP_CAROLIEiJ_G0024278	Zc3h6	100	71.429	ENSCAFG00020017525	ZC3H6	100	69.975	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024278	Zc3h6	80	69.345	ENSCHIG00000019719	-	95	69.904	Capra_hircus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.071	ENSTSYG00000031857	ZC3H6	100	75.399	Carlito_syrichta
MGP_CAROLIEiJ_G0024278	Zc3h6	99	71.088	ENSCPOG00000003445	ZC3H6	100	71.854	Cavia_porcellus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.490	ENSCATG00000036595	ZC3H6	100	76.406	Cercocebus_atys
MGP_CAROLIEiJ_G0024278	Zc3h6	90	74.230	ENSCLAG00000006605	ZC3H6	100	74.323	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024278	Zc3h6	90	75.444	ENSCSAG00000016793	ZC3H6	100	75.070	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	76.356	ENSCANG00000041036	ZC3H6	100	76.271	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	81.500	ENSCGRG00001022022	Zc3h6	99	81.500	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024278	Zc3h6	99	84.444	ENSCGRG00000016162	Zc3h6	100	84.444	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024278	Zc3h6	67	55.556	ENSCSEG00000012267	zc3h6	90	48.424	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0024278	Zc3h6	99	67.007	ENSDNOG00000044811	ZC3H6	100	66.752	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	72.774	ENSDORG00000013967	Zc3h6	100	72.265	Dipodomys_ordii
MGP_CAROLIEiJ_G0024278	Zc3h6	83	73.461	ENSEASG00005006493	ZC3H6	99	73.461	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	74.895	ENSECAG00000023620	ZC3H6	100	74.559	Equus_caballus
MGP_CAROLIEiJ_G0024278	Zc3h6	82	65.549	ENSEEUG00000013883	-	85	65.736	Erinaceus_europaeus
MGP_CAROLIEiJ_G0024278	Zc3h6	78	37.238	ENSELUG00000012256	zc3h6	98	36.296	Esox_lucius
MGP_CAROLIEiJ_G0024278	Zc3h6	100	73.782	ENSFCAG00000008089	ZC3H6	100	73.361	Felis_catus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	57.036	ENSFALG00000011589	ZC3H6	99	57.119	Ficedula_albicollis
MGP_CAROLIEiJ_G0024278	Zc3h6	99	75.042	ENSFDAG00000002521	ZC3H6	99	74.958	Fukomys_damarensis
MGP_CAROLIEiJ_G0024278	Zc3h6	99	56.647	ENSGALG00000008269	ZC3H6	98	57.308	Gallus_gallus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	60.622	ENSGAFG00000006771	zc3h6	77	60.000	Gambusia_affinis
MGP_CAROLIEiJ_G0024278	Zc3h6	62	60.094	ENSGACG00000005343	zc3h6	96	41.739	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	58.759	ENSGAGG00000010857	ZC3H6	99	58.438	Gopherus_agassizii
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.490	ENSGGOG00000001665	ZC3H6	100	76.406	Gorilla_gorilla
MGP_CAROLIEiJ_G0024278	Zc3h6	99	74.724	ENSHGLG00000011882	ZC3H6	96	74.809	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024278	Zc3h6	99	73.129	ENSHGLG00100002559	ZC3H6	100	73.129	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024278	Zc3h6	88	40.077	ENSHCOG00000012519	zc3h6	89	44.492	Hippocampus_comes
MGP_CAROLIEiJ_G0024278	Zc3h6	90	73.783	ENSSTOG00000008120	-	100	74.064	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	75.926	ENSJJAG00000013206	Zc3h6	100	76.010	Jaculus_jaculus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.583	ENSKMAG00000016252	zc3h6	85	45.684	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0024278	Zc3h6	62	64.249	ENSLBEG00000003054	zc3h6	95	38.752	Labrus_bergylta
MGP_CAROLIEiJ_G0024278	Zc3h6	99	45.110	ENSLACG00000012014	ZC3H6	100	46.629	Latimeria_chalumnae
MGP_CAROLIEiJ_G0024278	Zc3h6	100	42.788	ENSLOCG00000016548	zc3h6	98	43.008	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0024278	Zc3h6	92	69.573	ENSLAFG00000001151	ZC3H6	98	69.210	Loxodonta_africana
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.658	ENSMFAG00000036963	ZC3H6	100	76.574	Macaca_fascicularis
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.574	ENSMMUG00000016430	ZC3H6	100	76.490	Macaca_mulatta
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.406	ENSMNEG00000031225	ZC3H6	100	76.322	Macaca_nemestrina
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.574	ENSMLEG00000038821	ZC3H6	100	76.490	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	37.599	ENSMAMG00000021546	zc3h6	98	38.590	Mastacembelus_armatus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	56.730	ENSMGAG00000003025	ZC3H6	99	57.308	Meleagris_gallopavo
MGP_CAROLIEiJ_G0024278	Zc3h6	100	83.997	ENSMAUG00000017009	Zc3h6	100	83.997	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.322	ENSMICG00000036353	ZC3H6	100	75.735	Microcebus_murinus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	83.531	ENSMOCG00000002054	Zc3h6	100	83.531	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024278	Zc3h6	99	60.986	ENSMODG00000006612	ZC3H6	100	60.652	Monodelphis_domestica
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.975	ENSMALG00000002048	zc3h6	94	43.902	Monopterus_albus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	95.837	ENSMUSG00000042851	Zc3h6	100	95.837	Mus_musculus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	93.458	MGP_PahariEiJ_G0025723	Zc3h6	100	93.458	Mus_pahari
MGP_CAROLIEiJ_G0024278	Zc3h6	100	96.007	MGP_SPRETEiJ_G0025198	Zc3h6	100	96.007	Mus_spretus
MGP_CAROLIEiJ_G0024278	Zc3h6	90	71.335	ENSMPUG00000009624	ZC3H6	100	70.682	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024278	Zc3h6	99	69.328	ENSMLUG00000004896	ZC3H6	99	69.580	Myotis_lucifugus
MGP_CAROLIEiJ_G0024278	Zc3h6	94	75.514	ENSNGAG00000013596	Zc3h6	99	75.516	Nannospalax_galili
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.216	ENSNBRG00000015382	zc3h6	89	42.601	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0024278	Zc3h6	99	75.719	ENSNLEG00000033657	ZC3H6	99	75.635	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024278	Zc3h6	100	70.504	ENSOPRG00000012717	ZC3H6	100	70.420	Ochotona_princeps
MGP_CAROLIEiJ_G0024278	Zc3h6	94	72.566	ENSODEG00000009099	ZC3H6	99	72.824	Octodon_degus
MGP_CAROLIEiJ_G0024278	Zc3h6	63	60.088	ENSONIG00000009880	zc3h6	90	41.986	Oreochromis_niloticus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	62.248	ENSOANG00000012054	-	96	62.511	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0024278	Zc3h6	95	73.363	ENSOCUG00000011125	ZC3H6	100	72.668	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024278	Zc3h6	61	67.188	ENSORLG00000011179	zc3h6	86	44.000	Oryzias_latipes
MGP_CAROLIEiJ_G0024278	Zc3h6	61	67.188	ENSORLG00020017202	zc3h6	86	44.000	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0024278	Zc3h6	61	67.708	ENSORLG00015001664	zc3h6	86	44.211	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0024278	Zc3h6	82	45.299	ENSOMEG00000001296	zc3h6	86	46.667	Oryzias_melastigma
MGP_CAROLIEiJ_G0024278	Zc3h6	99	75.275	ENSOGAG00000002556	ZC3H6	100	74.598	Otolemur_garnettii
MGP_CAROLIEiJ_G0024278	Zc3h6	100	70.805	ENSOARG00000014503	ZC3H6	100	70.218	Ovis_aries
MGP_CAROLIEiJ_G0024278	Zc3h6	99	76.186	ENSPPAG00000030495	ZC3H6	100	76.102	Pan_paniscus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	73.866	ENSPPRG00000005673	ZC3H6	100	73.445	Panthera_pardus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	72.489	ENSPTIG00000015800	ZC3H6	99	72.068	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.406	ENSPTRG00000012363	ZC3H6	100	76.322	Pan_troglodytes
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.322	ENSPANG00000025224	ZC3H6	100	76.238	Papio_anubis
MGP_CAROLIEiJ_G0024278	Zc3h6	62	68.229	ENSPKIG00000007353	zc3h6	97	68.229	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0024278	Zc3h6	99	57.943	ENSPSIG00000002520	ZC3H6	100	58.495	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0024278	Zc3h6	99	82.119	ENSPEMG00000000918	Zc3h6	100	82.119	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024278	Zc3h6	90	62.997	ENSPCIG00000029741	ZC3H6	100	62.627	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.583	ENSPFOG00000015748	zc3h6	86	46.467	Poecilia_formosa
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.583	ENSPLAG00000002469	zc3h6	86	46.467	Poecilia_latipinna
MGP_CAROLIEiJ_G0024278	Zc3h6	60	65.241	ENSPMEG00000020802	zc3h6	83	64.550	Poecilia_mexicana
MGP_CAROLIEiJ_G0024278	Zc3h6	66	62.136	ENSPREG00000023126	zc3h6	94	41.164	Poecilia_reticulata
MGP_CAROLIEiJ_G0024278	Zc3h6	78	67.819	ENSPCAG00000015468	ZC3H6	77	66.415	Procavia_capensis
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.071	ENSPCOG00000016627	ZC3H6	100	74.895	Propithecus_coquereli
MGP_CAROLIEiJ_G0024278	Zc3h6	69	86.139	ENSPVAG00000013728	ZC3H6	70	86.139	Pteropus_vampyrus
MGP_CAROLIEiJ_G0024278	Zc3h6	62	63.725	ENSPNYG00000018130	zc3h6	90	42.377	Pundamilia_nyererei
MGP_CAROLIEiJ_G0024278	Zc3h6	78	41.141	ENSPNAG00000009331	zc3h6	98	39.636	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0024278	Zc3h6	100	89.585	ENSRNOG00000026277	Zc3h6	100	89.331	Rattus_norvegicus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.091	ENSSBOG00000033489	ZC3H6	100	75.755	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024278	Zc3h6	83	62.777	ENSSHAG00000016634	ZC3H6	100	62.777	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0024278	Zc3h6	100	37.651	ENSSFOG00015004488	zc3h6	98	38.943	Scleropages_formosus
MGP_CAROLIEiJ_G0024278	Zc3h6	61	62.745	ENSSMAG00000008411	zc3h6	85	44.422	Scophthalmus_maximus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	66.667	ENSSDUG00000006105	zc3h6	91	43.286	Seriola_dumerili
MGP_CAROLIEiJ_G0024278	Zc3h6	60	66.667	ENSSLDG00000021813	zc3h6	91	43.286	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0024278	Zc3h6	99	67.854	ENSSARG00000001035	ZC3H6	100	67.600	Sorex_araneus
MGP_CAROLIEiJ_G0024278	Zc3h6	55	59.690	ENSSPUG00000013031	-	62	48.889	Sphenodon_punctatus
MGP_CAROLIEiJ_G0024278	Zc3h6	100	74.202	ENSSSCG00000008096	ZC3H6	100	73.529	Sus_scrofa
MGP_CAROLIEiJ_G0024278	Zc3h6	99	56.245	ENSTGUG00000007468	ZC3H6	100	56.741	Taeniopygia_guttata
MGP_CAROLIEiJ_G0024278	Zc3h6	80	39.634	ENSTRUG00000012901	zc3h6	98	38.356	Takifugu_rubripes
MGP_CAROLIEiJ_G0024278	Zc3h6	67	52.560	ENSTNIG00000016608	zc3h6	74	65.306	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0024278	Zc3h6	85	74.275	ENSTBEG00000016232	ZC3H6	91	71.377	Tupaia_belangeri
MGP_CAROLIEiJ_G0024278	Zc3h6	76	82.178	ENSTTRG00000013154	ZC3H6	75	82.178	Tursiops_truncatus
MGP_CAROLIEiJ_G0024278	Zc3h6	90	71.709	ENSUAMG00000002401	ZC3H6	100	70.935	Ursus_americanus
MGP_CAROLIEiJ_G0024278	Zc3h6	90	71.709	ENSUMAG00000008663	ZC3H6	100	70.935	Ursus_maritimus
MGP_CAROLIEiJ_G0024278	Zc3h6	99	72.566	ENSVPAG00000005912	ZC3H6	100	71.973	Vicugna_pacos
MGP_CAROLIEiJ_G0024278	Zc3h6	90	72.150	ENSVVUG00000028662	ZC3H6	100	71.375	Vulpes_vulpes
MGP_CAROLIEiJ_G0024278	Zc3h6	87	55.270	ENSXETG00000013762	zc3h6	95	56.183	Xenopus_tropicalis
MGP_CAROLIEiJ_G0024278	Zc3h6	55	62.136	ENSXCOG00000011662	zc3h6	77	52.963	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0024278	Zc3h6	60	64.583	ENSXMAG00000020822	zc3h6	86	46.266	Xiphophorus_maculatus