EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024400 (Gene tree)
Gene ID: 110310241
Gene Symbol: Xrn2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 64728 bases
Position: chr2:139194732-139259459
Accession: 110310241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0055058	XRN_N	PF03159.18	1.5e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0055061	-	331	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055060	-	572	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055059	-	622	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055058	-	3438	XM_021183010	MGP_CAROLIEiJ_P0055058	951 (aa)	XP_021038669	UPI000A317B90

Gene Model

Click here to download MGP_CAROLIEiJ_G0024400's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024400's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0024400	Xrn2	71	39.385	MGP_CAROLIEiJ_G0032535	Xrn1	90	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.794	ENSG00000088930	XRN2	100	95.794	Homo_sapiens
MGP_CAROLIEiJ_G0024400	Xrn2	97	72.009	ENSAPOG00000009818	xrn2	100	70.744	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.478	ENSAMEG00000012581	XRN2	100	95.478	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024400	Xrn2	90	71.071	ENSACIG00000015047	xrn2	95	75.048	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0024400	Xrn2	97	72.436	ENSAOCG00000023632	xrn2	100	71.254	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0024400	Xrn2	97	72.359	ENSAPEG00000014871	xrn2	100	71.079	Amphiprion_percula
MGP_CAROLIEiJ_G0024400	Xrn2	95	71.831	ENSATEG00000001273	xrn2	98	71.186	Anabas_testudineus
MGP_CAROLIEiJ_G0024400	Xrn2	97	82.759	ENSAPLG00000013869	XRN2	99	83.190	Anas_platyrhynchos
MGP_CAROLIEiJ_G0024400	Xrn2	100	79.938	ENSACAG00000005565	XRN2	100	79.938	Anolis_carolinensis
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.163	ENSANAG00000020126	XRN2	100	95.163	Aotus_nancymaae
MGP_CAROLIEiJ_G0024400	Xrn2	90	73.873	ENSACLG00000010522	xrn2	96	76.667	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.677	ENSAMXG00000018301	xrn2	100	71.677	Astyanax_mexicanus
MGP_CAROLIEiJ_G0024400	Xrn2	100	93.277	ENSBTAG00000011304	XRN2	100	93.277	Bos_taurus
MGP_CAROLIEiJ_G0024400	Xrn2	86	55.374	WBGene00006964	xrn-2	89	54.422	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.268	ENSCJAG00000005611	XRN2	100	95.268	Callithrix_jacchus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.478	ENSCAFG00000005185	XRN2	100	95.478	Canis_familiaris
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.478	ENSCAFG00020027479	XRN2	100	95.478	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024400	Xrn2	100	93.382	ENSCHIG00000006921	XRN2	100	93.382	Capra_hircus
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.742	ENSTSYG00000008315	XRN2	100	94.742	Carlito_syrichta
MGP_CAROLIEiJ_G0024400	Xrn2	97	80.819	ENSCAPG00000010773	XRN2	99	80.711	Cavia_aperea
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.794	ENSCPOG00000009407	XRN2	100	95.794	Cavia_porcellus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSCATG00000040350	XRN2	100	95.899	Cercocebus_atys
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSCLAG00000013419	XRN2	100	95.899	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSCSAG00000011094	XRN2	100	95.899	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024400	Xrn2	68	99.462	ENSCHOG00000013404	XRN2	70	99.462	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0024400	Xrn2	100	83.958	ENSCPBG00000023533	XRN2	100	84.375	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0024400	Xrn2	86	59.666	ENSCING00000022336	-	100	60.024	Ciona_intestinalis
MGP_CAROLIEiJ_G0024400	Xrn2	98	53.943	ENSCSAVG00000011217	-	96	69.880	Ciona_savignyi
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSCANG00000040240	XRN2	100	95.899	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024400	Xrn2	98	97.097	ENSCGRG00001010676	Xrn2	99	97.097	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024400	Xrn2	97	96.336	ENSCGRG00000006378	Xrn2	99	96.336	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024400	Xrn2	54	72.745	ENSCSEG00000005628	xrn2	100	72.745	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0024400	Xrn2	89	71.379	ENSCVAG00000018999	xrn2	98	77.333	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	70.154	ENSDARG00000101900	xrn2	96	78.394	Danio_rerio
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.848	ENSDNOG00000001895	XRN2	100	94.848	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024400	Xrn2	100	93.270	ENSDORG00000005434	Xrn2	100	93.270	Dipodomys_ordii
MGP_CAROLIEiJ_G0024400	Xrn2	86	56.364	FBgn0031868	Rat1	87	56.364	Drosophila_melanogaster
MGP_CAROLIEiJ_G0024400	Xrn2	100	82.019	ENSETEG00000001740	XRN2	100	82.019	Echinops_telfairi
MGP_CAROLIEiJ_G0024400	Xrn2	84	71.618	ENSEBUG00000016136	xrn2	100	71.618	Eptatretus_burgeri
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.058	ENSEASG00005002484	XRN2	100	95.058	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024400	Xrn2	99	95.148	ENSECAG00000018988	XRN2	96	100.000	Equus_caballus
MGP_CAROLIEiJ_G0024400	Xrn2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
MGP_CAROLIEiJ_G0024400	Xrn2	100	69.632	ENSELUG00000000552	xrn2	100	70.389	Esox_lucius
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.268	ENSFCAG00000007970	XRN2	100	95.268	Felis_catus
MGP_CAROLIEiJ_G0024400	Xrn2	100	82.057	ENSFALG00000004508	XRN2	100	82.476	Ficedula_albicollis
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.478	ENSFDAG00000016311	XRN2	100	95.478	Fukomys_damarensis
MGP_CAROLIEiJ_G0024400	Xrn2	54	69.962	ENSFHEG00000013039	xrn2	98	69.962	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0024400	Xrn2	86	73.390	ENSGMOG00000013436	xrn2	100	73.390	Gadus_morhua
MGP_CAROLIEiJ_G0024400	Xrn2	100	82.495	ENSGALG00000008372	XRN2	100	82.495	Gallus_gallus
MGP_CAROLIEiJ_G0024400	Xrn2	89	74.126	ENSGAFG00000014284	xrn2	98	74.126	Gambusia_affinis
MGP_CAROLIEiJ_G0024400	Xrn2	87	75.301	ENSGACG00000011870	xrn2	96	78.571	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	83.646	ENSGAGG00000004884	XRN2	100	84.062	Gopherus_agassizii
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.004	ENSGGOG00000013738	XRN2	100	96.004	Gorilla_gorilla
MGP_CAROLIEiJ_G0024400	Xrn2	54	74.664	ENSHBUG00000005077	xrn2	96	76.667	Haplochromis_burtoni
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.427	ENSHGLG00000014831	XRN2	100	94.217	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.427	ENSHGLG00100013130	XRN2	100	94.217	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024400	Xrn2	99	68.283	ENSHCOG00000011994	xrn2	99	69.200	Hippocampus_comes
MGP_CAROLIEiJ_G0024400	Xrn2	100	69.725	ENSIPUG00000006639	xrn2	100	69.725	Ictalurus_punctatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.584	ENSSTOG00000000589	XRN2	100	95.584	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.584	ENSJJAG00000022128	Xrn2	100	95.584	Jaculus_jaculus
MGP_CAROLIEiJ_G0024400	Xrn2	54	80.273	ENSLBEG00000010041	xrn2	100	80.273	Labrus_bergylta
MGP_CAROLIEiJ_G0024400	Xrn2	93	76.744	ENSLACG00000008307	XRN2	99	79.264	Latimeria_chalumnae
MGP_CAROLIEiJ_G0024400	Xrn2	99	72.280	ENSLOCG00000016874	xrn2	100	72.280	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.217	ENSLAFG00000014624	XRN2	100	94.217	Loxodonta_africana
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSMFAG00000038122	XRN2	100	95.899	Macaca_fascicularis
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSMMUG00000011405	XRN2	100	95.899	Macaca_mulatta
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.794	ENSMNEG00000040626	XRN2	100	95.794	Macaca_nemestrina
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.794	ENSMLEG00000041897	XRN2	100	95.794	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0024400	Xrn2	95	73.407	ENSMAMG00000008633	xrn2	97	72.825	Mastacembelus_armatus
MGP_CAROLIEiJ_G0024400	Xrn2	90	75.838	ENSMZEG00005022362	xrn2	97	75.838	Maylandia_zebra
MGP_CAROLIEiJ_G0024400	Xrn2	99	81.126	ENSMGAG00000003196	XRN2	99	81.126	Meleagris_gallopavo
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.740	ENSMAUG00000021842	Xrn2	100	96.740	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.848	ENSMICG00000008126	XRN2	100	94.848	Microcebus_murinus
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.530	ENSMOCG00000012588	Xrn2	100	96.530	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024400	Xrn2	89	73.968	ENSMMOG00000017576	xrn2	96	75.000	Mola_mola
MGP_CAROLIEiJ_G0024400	Xrn2	100	89.485	ENSMODG00000006163	XRN2	100	89.485	Monodelphis_domestica
MGP_CAROLIEiJ_G0024400	Xrn2	91	72.247	ENSMALG00000011355	xrn2	95	76.482	Monopterus_albus
MGP_CAROLIEiJ_G0024400	Xrn2	100	99.685	ENSMUSG00000027433	Xrn2	100	99.685	Mus_musculus
MGP_CAROLIEiJ_G0024400	Xrn2	100	99.474	MGP_PahariEiJ_G0025843	Xrn2	100	99.474	Mus_pahari
MGP_CAROLIEiJ_G0024400	Xrn2	100	99.685	MGP_SPRETEiJ_G0025318	Xrn2	100	99.685	Mus_spretus
MGP_CAROLIEiJ_G0024400	Xrn2	100	93.698	ENSMPUG00000001198	XRN2	93	93.698	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.163	ENSMLUG00000001536	XRN2	100	95.163	Myotis_lucifugus
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.635	ENSNGAG00000018138	Xrn2	100	96.635	Nannospalax_galili
MGP_CAROLIEiJ_G0024400	Xrn2	90	76.042	ENSNBRG00000008062	xrn2	97	76.042	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSNLEG00000009991	XRN2	100	95.899	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024400	Xrn2	66	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
MGP_CAROLIEiJ_G0024400	Xrn2	75	79.058	ENSOPRG00000001397	-	77	79.058	Ochotona_princeps
MGP_CAROLIEiJ_G0024400	Xrn2	98	86.315	ENSODEG00000000860	-	99	86.746	Octodon_degus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.373	ENSODEG00000010745	-	100	95.373	Octodon_degus
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.753	ENSONIG00000018720	xrn2	100	72.033	Oreochromis_niloticus
MGP_CAROLIEiJ_G0024400	Xrn2	100	89.717	ENSOANG00000015673	XRN2	100	89.717	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.004	ENSOCUG00000013468	XRN2	100	96.004	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024400	Xrn2	98	70.747	ENSORLG00000017213	xrn2	97	75.289	Oryzias_latipes
MGP_CAROLIEiJ_G0024400	Xrn2	98	70.968	ENSORLG00020001824	xrn2	100	70.612	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0024400	Xrn2	98	70.747	ENSORLG00015019747	xrn2	100	70.397	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0024400	Xrn2	97	69.895	ENSOMEG00000019820	xrn2	100	69.504	Oryzias_melastigma
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.063	ENSOGAG00000001068	XRN2	100	95.063	Otolemur_garnettii
MGP_CAROLIEiJ_G0024400	Xrn2	97	93.204	ENSOARG00000004443	XRN2	100	93.204	Ovis_aries
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.004	ENSPPAG00000033549	XRN2	100	96.004	Pan_paniscus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.268	ENSPPRG00000008732	XRN2	100	95.268	Panthera_pardus
MGP_CAROLIEiJ_G0024400	Xrn2	97	95.140	ENSPTIG00000015683	XRN2	97	95.140	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.004	ENSPTRG00000013308	XRN2	100	96.004	Pan_troglodytes
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSPANG00000018088	XRN2	100	95.899	Papio_anubis
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.034	ENSPKIG00000016889	xrn2	100	71.107	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0024400	Xrn2	80	87.109	ENSPSIG00000014666	XRN2	100	87.109	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0024400	Xrn2	100	96.635	ENSPEMG00000000111	Xrn2	100	96.635	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024400	Xrn2	100	69.990	ENSPFOG00000004182	xrn2	99	70.497	Poecilia_formosa
MGP_CAROLIEiJ_G0024400	Xrn2	89	74.592	ENSPLAG00000007351	xrn2	96	74.592	Poecilia_latipinna
MGP_CAROLIEiJ_G0024400	Xrn2	94	68.450	ENSPMEG00000011798	xrn2	99	68.988	Poecilia_mexicana
MGP_CAROLIEiJ_G0024400	Xrn2	90	73.963	ENSPREG00000012452	xrn2	99	72.921	Poecilia_reticulata
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.478	ENSPPYG00000010755	XRN2	100	95.478	Pongo_abelii
MGP_CAROLIEiJ_G0024400	Xrn2	100	88.982	ENSPCAG00000011191	XRN2	100	88.982	Procavia_capensis
MGP_CAROLIEiJ_G0024400	Xrn2	100	88.013	ENSPCOG00000016468	XRN2	100	88.013	Propithecus_coquereli
MGP_CAROLIEiJ_G0024400	Xrn2	93	90.606	ENSPVAG00000004596	XRN2	93	90.606	Pteropus_vampyrus
MGP_CAROLIEiJ_G0024400	Xrn2	90	73.873	ENSPNYG00000001765	xrn2	97	73.873	Pundamilia_nyererei
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.690	ENSPNAG00000010956	xrn2	99	71.690	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0024400	Xrn2	100	97.476	ENSRNOG00000011785	Xrn2	100	97.476	Rattus_norvegicus
MGP_CAROLIEiJ_G0024400	Xrn2	86	97.188	ENSRBIG00000036193	XRN2	100	97.188	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.899	ENSRROG00000044400	XRN2	90	95.899	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024400	Xrn2	64	56.111	YOR048C	RAT1	63	53.846	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.373	ENSSBOG00000021014	XRN2	100	95.373	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.930	ENSSFOG00015001091	xrn2	100	71.930	Scleropages_formosus
MGP_CAROLIEiJ_G0024400	Xrn2	92	73.138	ENSSMAG00000007834	xrn2	100	68.725	Scophthalmus_maximus
MGP_CAROLIEiJ_G0024400	Xrn2	91	72.511	ENSSDUG00000012802	xrn2	99	72.851	Seriola_dumerili
MGP_CAROLIEiJ_G0024400	Xrn2	93	74.237	ENSSLDG00000021273	xrn2	100	74.237	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0024400	Xrn2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
MGP_CAROLIEiJ_G0024400	Xrn2	98	78.739	ENSSPUG00000005485	XRN2	96	78.846	Sphenodon_punctatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	70.438	ENSSPAG00000016027	xrn2	99	70.522	Stegastes_partitus
MGP_CAROLIEiJ_G0024400	Xrn2	100	93.586	ENSSSCG00000007109	XRN2	100	93.586	Sus_scrofa
MGP_CAROLIEiJ_G0024400	Xrn2	100	80.773	ENSTGUG00000007535	XRN2	100	81.191	Taeniopygia_guttata
MGP_CAROLIEiJ_G0024400	Xrn2	100	68.485	ENSTRUG00000015489	xrn2	100	68.927	Takifugu_rubripes
MGP_CAROLIEiJ_G0024400	Xrn2	100	71.696	ENSTNIG00000010712	xrn2	100	71.696	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0024400	Xrn2	100	94.742	ENSTBEG00000004119	XRN2	100	94.742	Tupaia_belangeri
MGP_CAROLIEiJ_G0024400	Xrn2	93	96.937	ENSTTRG00000009087	XRN2	93	96.937	Tursiops_truncatus
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.584	ENSUAMG00000024634	XRN2	100	95.584	Ursus_americanus
MGP_CAROLIEiJ_G0024400	Xrn2	97	95.248	ENSUMAG00000004012	XRN2	95	95.248	Ursus_maritimus
MGP_CAROLIEiJ_G0024400	Xrn2	89	87.589	ENSVPAG00000010694	XRN2	91	87.589	Vicugna_pacos
MGP_CAROLIEiJ_G0024400	Xrn2	100	95.373	ENSVVUG00000012178	XRN2	100	95.373	Vulpes_vulpes
MGP_CAROLIEiJ_G0024400	Xrn2	100	73.728	ENSXETG00000023501	xrn2	100	74.351	Xenopus_tropicalis
MGP_CAROLIEiJ_G0024400	Xrn2	100	68.410	ENSXMAG00000000242	xrn2	92	79.319	Xiphophorus_maculatus