EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024604 (Gene tree)
Gene ID: 110307484
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 158719 bases
Position: chr2:152848165-153006883
Accession: 110307484
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0055910	ResIII	PF04851.15	3.7e-08	1	1
MGP_CAROLIEiJ_P0055905	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0055905	-	10515	XM_021179715	MGP_CAROLIEiJ_P0055905	2711 (aa)	XP_021035374	-
MGP_CAROLIEiJ_T0055916	-	5034	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055907	-	728	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055906	-	10743	-	MGP_CAROLIEiJ_P0055906	2709 (aa)	-	UPI000A31AF57
MGP_CAROLIEiJ_T0055912	-	3093	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055913	-	616	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055910	-	3608	-	MGP_CAROLIEiJ_P0055910	1183 (aa)	-	-
MGP_CAROLIEiJ_T0055911	-	596	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055909	-	3952	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055908	-	764	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055914	-	646	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0055915	-	675	-	MGP_CAROLIEiJ_P0055915	217 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024604's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0024604	Chd6	69	36.395	MGP_CAROLIEiJ_G0021099	Chd1	84	35.312
MGP_CAROLIEiJ_G0024604	Chd6	87	68.786	MGP_CAROLIEiJ_G0031364	Chd9	72	62.169
MGP_CAROLIEiJ_G0024604	Chd6	76	67.221	MGP_CAROLIEiJ_G0025797	Chd7	71	65.229
MGP_CAROLIEiJ_G0024604	Chd6	88	69.158	MGP_CAROLIEiJ_G0019237	Chd8	66	63.751
MGP_CAROLIEiJ_G0024604	Chd6	61	37.750	MGP_CAROLIEiJ_G0029860	Chd2	63	32.861

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	ENSG00000124177	CHD6	99	96.599	Homo_sapiens
MGP_CAROLIEiJ_G0024604	Chd6	85	83.712	ENSAPOG00000013736	chd6	61	75.735	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.346	ENSAMEG00000009496	CHD6	100	87.459	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024604	Chd6	89	79.981	ENSATEG00000005608	chd6	65	73.393	Anabas_testudineus
MGP_CAROLIEiJ_G0024604	Chd6	99	85.362	ENSAPLG00000015592	CHD6	99	71.497	Anas_platyrhynchos
MGP_CAROLIEiJ_G0024604	Chd6	99	78.428	ENSACAG00000006842	CHD6	99	66.908	Anolis_carolinensis
MGP_CAROLIEiJ_G0024604	Chd6	100	94.599	ENSANAG00000037548	CHD6	99	91.009	Aotus_nancymaae
MGP_CAROLIEiJ_G0024604	Chd6	87	78.143	ENSAMXG00000009576	chd6	77	69.170	Astyanax_mexicanus
MGP_CAROLIEiJ_G0024604	Chd6	100	92.911	ENSBTAG00000005733	CHD6	100	84.607	Bos_taurus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	ENSCJAG00000017920	CHD6	99	90.826	Callithrix_jacchus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.262	ENSCAFG00000009236	CHD6	100	87.233	Canis_familiaris
MGP_CAROLIEiJ_G0024604	Chd6	99	94.293	ENSCAFG00020012906	CHD6	99	93.426	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024604	Chd6	100	92.827	ENSCHIG00000017606	CHD6	100	84.497	Capra_hircus
MGP_CAROLIEiJ_G0024604	Chd6	84	87.423	ENSTSYG00000014635	CHD6	100	87.467	Carlito_syrichta
MGP_CAROLIEiJ_G0024604	Chd6	100	94.346	ENSCPOG00000015641	CHD6	100	88.378	Cavia_porcellus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	ENSCCAG00000036828	CHD6	99	91.009	Cebus_capucinus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	ENSCATG00000039248	CHD6	99	91.009	Cercocebus_atys
MGP_CAROLIEiJ_G0024604	Chd6	100	94.262	ENSCLAG00000013743	CHD6	100	88.037	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024604	Chd6	100	94.768	ENSCSAG00000013997	CHD6	100	87.946	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024604	Chd6	100	85.907	ENSCHOG00000012647	CHD6	95	87.195	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0024604	Chd6	100	86.146	ENSCPBG00000019382	CHD6	99	72.721	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0024604	Chd6	100	94.768	ENSCANG00000043435	CHD6	99	91.009	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024604	Chd6	100	97.466	ENSCGRG00001002694	Chd6	100	93.884	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024604	Chd6	74	96.595	ENSCGRG00000006749	-	99	96.708	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024604	Chd6	99	77.341	ENSDARG00000017244	chd6	79	72.902	Danio_rerio
MGP_CAROLIEiJ_G0024604	Chd6	99	93.957	ENSDNOG00000004176	CHD6	99	85.799	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024604	Chd6	99	94.444	ENSEASG00005023433	CHD6	95	95.174	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024604	Chd6	99	94.421	ENSECAG00000011761	CHD6	100	87.449	Equus_caballus
MGP_CAROLIEiJ_G0024604	Chd6	73	87.442	ENSELUG00000012309	chd6	89	79.587	Esox_lucius
MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	ENSFCAG00000003572	CHD6	100	87.128	Felis_catus
MGP_CAROLIEiJ_G0024604	Chd6	100	84.506	ENSFALG00000012563	CHD6	94	77.299	Ficedula_albicollis
MGP_CAROLIEiJ_G0024604	Chd6	99	94.473	ENSFDAG00000013791	CHD6	99	88.524	Fukomys_damarensis
MGP_CAROLIEiJ_G0024604	Chd6	85	74.975	ENSGMOG00000011715	chd6	85	69.407	Gadus_morhua
MGP_CAROLIEiJ_G0024604	Chd6	89	76.598	ENSGACG00000000037	chd6	86	69.323	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	ENSGGOG00000013123	CHD6	99	91.009	Gorilla_gorilla
MGP_CAROLIEiJ_G0024604	Chd6	92	78.403	ENSHBUG00000014701	chd6	65	72.797	Haplochromis_burtoni
MGP_CAROLIEiJ_G0024604	Chd6	100	94.430	ENSHGLG00000004548	CHD6	100	88.640	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024604	Chd6	100	94.430	ENSHGLG00100006401	CHD6	100	88.640	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024604	Chd6	85	83.548	ENSIPUG00000003692	chd6	78	75.733	Ictalurus_punctatus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.346	ENSSTOG00000013382	CHD6	100	89.003	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024604	Chd6	99	80.572	ENSLACG00000010881	CHD6	84	76.391	Latimeria_chalumnae
MGP_CAROLIEiJ_G0024604	Chd6	83	86.952	ENSLOCG00000007386	chd6	87	75.106	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.177	ENSLAFG00000012144	CHD6	100	87.017	Loxodonta_africana
MGP_CAROLIEiJ_G0024604	Chd6	100	94.768	ENSMFAG00000032830	CHD6	99	91.009	Macaca_fascicularis
MGP_CAROLIEiJ_G0024604	Chd6	100	94.768	ENSMMUG00000020458	CHD6	99	91.009	Macaca_mulatta
MGP_CAROLIEiJ_G0024604	Chd6	100	94.768	ENSMNEG00000040847	CHD6	99	91.009	Macaca_nemestrina
MGP_CAROLIEiJ_G0024604	Chd6	99	94.719	ENSMLEG00000031965	CHD6	99	91.009	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0024604	Chd6	92	76.203	ENSMAMG00000013111	chd6	64	80.435	Mastacembelus_armatus
MGP_CAROLIEiJ_G0024604	Chd6	99	85.191	ENSMGAG00000001121	CHD6	99	71.083	Meleagris_gallopavo
MGP_CAROLIEiJ_G0024604	Chd6	99	94.889	ENSMICG00000016641	CHD6	99	91.560	Microcebus_murinus
MGP_CAROLIEiJ_G0024604	Chd6	74	96.254	ENSMOCG00000014004	-	97	96.368	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024604	Chd6	75	95.918	ENSMODG00000000720	-	99	78.356	Monodelphis_domestica
MGP_CAROLIEiJ_G0024604	Chd6	100	99.746	ENSMUSG00000057133	Chd6	100	99.746	Mus_musculus
MGP_CAROLIEiJ_G0024604	Chd6	100	99.577	MGP_PahariEiJ_G0026048	Chd6	100	99.577	Mus_pahari
MGP_CAROLIEiJ_G0024604	Chd6	100	99.746	MGP_SPRETEiJ_G0025526	Chd6	100	99.746	Mus_spretus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.430	ENSMPUG00000017695	CHD6	100	86.097	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024604	Chd6	100	93.840	ENSMLUG00000016247	CHD6	100	86.576	Myotis_lucifugus
MGP_CAROLIEiJ_G0024604	Chd6	91	77.390	ENSNBRG00000013839	chd6	80	72.449	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0024604	Chd6	100	92.249	ENSNLEG00000006496	CHD6	99	87.038	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024604	Chd6	100	90.633	ENSOPRG00000013376	-	100	83.707	Ochotona_princeps
MGP_CAROLIEiJ_G0024604	Chd6	91	80.092	ENSONIG00000000393	chd6	84	74.430	Oreochromis_niloticus
MGP_CAROLIEiJ_G0024604	Chd6	99	86.360	ENSOANG00000014347	CHD6	99	68.843	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0024604	Chd6	99	94.421	ENSOCUG00000012394	CHD6	100	85.756	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024604	Chd6	85	82.806	ENSORLG00020021891	chd6	95	85.571	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0024604	Chd6	99	94.264	ENSOGAG00000002427	CHD6	100	86.497	Otolemur_garnettii
MGP_CAROLIEiJ_G0024604	Chd6	99	92.392	ENSOARG00000002597	CHD6	100	82.390	Ovis_aries
MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	ENSPPRG00000014756	CHD6	100	87.201	Panthera_pardus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.515	ENSPTIG00000011094	CHD6	100	87.091	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024604	Chd6	100	94.684	ENSPTRG00000013504	CHD6	99	91.009	Pan_troglodytes
MGP_CAROLIEiJ_G0024604	Chd6	100	94.852	ENSPANG00000025554	CHD6	99	91.193	Papio_anubis
MGP_CAROLIEiJ_G0024604	Chd6	89	80.569	ENSPKIG00000005578	chd6	79	72.529	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0024604	Chd6	80	84.591	ENSPMGG00000014877	chd6	85	74.708	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0024604	Chd6	74	96.233	ENSPEMG00000014672	-	99	92.844	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024604	Chd6	100	88.795	ENSPCIG00000028037	CHD6	100	77.578	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0024604	Chd6	92	78.351	ENSPLAG00000003128	chd6	63	73.394	Poecilia_latipinna
MGP_CAROLIEiJ_G0024604	Chd6	86	82.745	ENSPREG00000022653	chd6	99	85.714	Poecilia_reticulata
MGP_CAROLIEiJ_G0024604	Chd6	100	94.599	ENSPPYG00000011016	CHD6	100	88.024	Pongo_abelii
MGP_CAROLIEiJ_G0024604	Chd6	100	94.852	ENSPCOG00000001089	CHD6	99	91.009	Propithecus_coquereli
MGP_CAROLIEiJ_G0024604	Chd6	91	79.633	ENSPNYG00000022516	chd6	80	73.661	Pundamilia_nyererei
MGP_CAROLIEiJ_G0024604	Chd6	84	81.936	ENSPNAG00000012825	chd6	79	70.397	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0024604	Chd6	100	98.311	ENSRNOG00000016744	Chd6	100	95.463	Rattus_norvegicus
MGP_CAROLIEiJ_G0024604	Chd6	100	94.599	ENSSBOG00000022089	CHD6	99	91.009	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024604	Chd6	100	88.533	ENSSHAG00000017072	CHD6	100	77.219	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0024604	Chd6	91	81.860	ENSSFOG00015012920	chd6	81	72.182	Scleropages_formosus
MGP_CAROLIEiJ_G0024604	Chd6	72	98.684	ENSSARG00000002615	-	61	98.684	Sorex_araneus
MGP_CAROLIEiJ_G0024604	Chd6	100	93.502	ENSSSCG00000007360	CHD6	100	87.311	Sus_scrofa
MGP_CAROLIEiJ_G0024604	Chd6	93	88.869	ENSTGUG00000003179	CHD6	100	72.456	Taeniopygia_guttata
MGP_CAROLIEiJ_G0024604	Chd6	80	85.084	ENSTNIG00000017487	chd6	59	74.334	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0024604	Chd6	100	92.911	ENSTTRG00000013438	CHD6	100	83.468	Tursiops_truncatus
MGP_CAROLIEiJ_G0024604	Chd6	99	94.378	ENSUAMG00000024036	CHD6	95	93.629	Ursus_americanus
MGP_CAROLIEiJ_G0024604	Chd6	99	94.373	ENSUMAG00000002017	CHD6	95	93.629	Ursus_maritimus
MGP_CAROLIEiJ_G0024604	Chd6	95	89.432	ENSVPAG00000007941	CHD6	96	87.252	Vicugna_pacos
MGP_CAROLIEiJ_G0024604	Chd6	100	94.262	ENSVVUG00000029164	CHD6	100	87.128	Vulpes_vulpes
MGP_CAROLIEiJ_G0024604	Chd6	100	71.825	ENSXETG00000021445	chd6	100	60.692	Xenopus_tropicalis