EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024814 (Gene tree)
Gene ID: 110307828
Gene Symbol: Prpf6
Alias: 1190003A07Rik|2610031L17Rik|ANT-1|U5-102K
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 65151 bases
Position: chr2:171127088-171192238
Accession: 110307828
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0056799	PRP1_N	PF06424.12	2.2e-38	1	1
MGP_CAROLIEiJ_P0056800	PRP1_N	PF06424.12	1.1e-33	1	1
MGP_CAROLIEiJ_P0056795	PRP1_N	PF06424.12	9.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0056795	-	359	-	MGP_CAROLIEiJ_P0056795	54 (aa)	-	UPI0001889B64
MGP_CAROLIEiJ_T0056800	-	2880	XM_021180067	MGP_CAROLIEiJ_P0056800	883 (aa)	XP_021035726	-
MGP_CAROLIEiJ_T0056801	-	2272	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0056799	-	2871	-	MGP_CAROLIEiJ_P0056799	882 (aa)	-	-
MGP_CAROLIEiJ_T0056802	-	580	-	MGP_CAROLIEiJ_P0056802	152 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024814's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024814's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSG00000101161	PRPF6	100	91.605	Homo_sapiens
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSAPOG00000010395	prpf6	96	87.141	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSAMEG00000001916	PRPF6	99	90.870	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024814	Prpf6	100	86.185	ENSACIG00000019862	prpf6	96	87.035	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSAOCG00000012988	prpf6	96	87.141	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSAPEG00000008301	prpf6	100	80.553	Amphiprion_percula
MGP_CAROLIEiJ_G0024814	Prpf6	100	85.866	ENSATEG00000005581	prpf6	96	86.716	Anabas_testudineus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSACAG00000006464	PRPF6	95	91.498	Anolis_carolinensis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSANAG00000012661	PRPF6	100	91.711	Aotus_nancymaae
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSACLG00000025875	prpf6	96	86.929	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSAMXG00000001929	prpf6	96	87.340	Astyanax_mexicanus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSBTAG00000011656	PRPF6	100	91.711	Bos_taurus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCJAG00000010616	PRPF6	100	91.711	Callithrix_jacchus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSCAFG00000013165	PRPF6	100	92.136	Canis_familiaris
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSCAFG00020002050	PRPF6	100	92.136	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSCHIG00000018187	PRPF6	100	91.711	Capra_hircus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSTSYG00000007814	PRPF6	100	92.349	Carlito_syrichta
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCAPG00000015077	PRPF6	100	92.857	Cavia_aperea
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCPOG00000007518	PRPF6	100	92.986	Cavia_porcellus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCCAG00000024564	PRPF6	100	88.523	Cebus_capucinus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCATG00000037473	PRPF6	100	91.498	Cercocebus_atys
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCLAG00000003854	PRPF6	100	88.948	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCSAG00000016742	PRPF6	100	86.378	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0024814	Prpf6	80	97.208	ENSCHOG00000003315	-	76	97.208	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSCPBG00000013964	PRPF6	96	91.605	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0024814	Prpf6	99	68.182	ENSCING00000008817	-	99	68.499	Ciona_intestinalis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCANG00000038230	PRPF6	100	91.498	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSCGRG00001022666	Prpf6	100	93.199	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSCSEG00000018561	prpf6	100	81.509	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSCVAG00000010550	prpf6	96	87.141	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	85.972	ENSDARG00000091367	prpf6	99	86.823	Danio_rerio
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSDNOG00000040544	PRPF6	100	90.967	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024814	Prpf6	90	91.005	ENSDORG00000005406	Prpf6	100	91.005	Dipodomys_ordii
MGP_CAROLIEiJ_G0024814	Prpf6	99	66.523	FBgn0036828	CG6841	98	66.845	Drosophila_melanogaster
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSETEG00000004447	PRPF6	82	95.122	Echinops_telfairi
MGP_CAROLIEiJ_G0024814	Prpf6	100	85.185	ENSEBUG00000008835	prpf6	99	80.912	Eptatretus_burgeri
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSEASG00005023115	PRPF6	100	91.817	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSECAG00000013983	PRPF6	100	87.566	Equus_caballus
MGP_CAROLIEiJ_G0024814	Prpf6	90	100.000	ENSEEUG00000000180	PRPF6	81	100.000	Erinaceus_europaeus
MGP_CAROLIEiJ_G0024814	Prpf6	100	92.593	ENSELUG00000001945	prpf6	93	85.335	Esox_lucius
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSFCAG00000001183	PRPF6	100	91.923	Felis_catus
MGP_CAROLIEiJ_G0024814	Prpf6	100	83.953	ENSFALG00000006046	-	97	84.272	Ficedula_albicollis
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSFALG00000010326	-	97	91.498	Ficedula_albicollis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSFDAG00000006451	PRPF6	100	92.517	Fukomys_damarensis
MGP_CAROLIEiJ_G0024814	Prpf6	100	94.444	ENSFHEG00000000560	prpf6	96	87.460	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0024814	Prpf6	100	88.889	ENSGMOG00000015622	prpf6	99	83.298	Gadus_morhua
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSGALG00000006001	PRPF6	100	91.498	Gallus_gallus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSGAFG00000021109	prpf6	96	82.572	Gambusia_affinis
MGP_CAROLIEiJ_G0024814	Prpf6	100	90.741	ENSGACG00000002576	prpf6	99	85.228	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSGAGG00000008653	PRPF6	96	91.498	Gopherus_agassizii
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSGGOG00000016876	PRPF6	100	91.605	Gorilla_gorilla
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSHBUG00000004496	prpf6	96	86.929	Haplochromis_burtoni
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSHGLG00000009222	PRPF6	100	92.880	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSHGLG00100016600	PRPF6	100	92.694	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSHCOG00000011513	prpf6	96	85.654	Hippocampus_comes
MGP_CAROLIEiJ_G0024814	Prpf6	100	87.035	ENSIPUG00000004912	prpf6	96	87.460	Ictalurus_punctatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSSTOG00000002922	PRPF6	100	94.583	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSJJAG00000000836	Prpf6	100	92.880	Jaculus_jaculus
MGP_CAROLIEiJ_G0024814	Prpf6	100	85.866	ENSKMAG00000017800	prpf6	96	86.716	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0024814	Prpf6	100	92.593	ENSLBEG00000012582	prpf6	96	85.866	Labrus_bergylta
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSLOCG00000004827	prpf6	96	87.354	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSLAFG00000005272	PRPF6	100	91.286	Loxodonta_africana
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMFAG00000037542	PRPF6	100	91.498	Macaca_fascicularis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMMUG00000015558	PRPF6	98	89.081	Macaca_mulatta
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMNEG00000045555	PRPF6	85	95.276	Macaca_nemestrina
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSMAMG00000010718	prpf6	96	86.929	Mastacembelus_armatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSMZEG00005026539	prpf6	100	86.054	Maylandia_zebra
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSMZEG00005015261	-	99	86.412	Maylandia_zebra
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSMGAG00000006634	PRPF6	100	91.276	Meleagris_gallopavo
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMAUG00000013969	Prpf6	100	93.199	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024814	Prpf6	91	90.323	ENSMICG00000017793	PRPF6	99	90.323	Microcebus_murinus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMOCG00000001701	Prpf6	100	93.092	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024814	Prpf6	100	85.122	ENSMMOG00000020419	prpf6	100	85.972	Mola_mola
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMODG00000017051	PRPF6	99	91.122	Monodelphis_domestica
MGP_CAROLIEiJ_G0024814	Prpf6	100	92.593	ENSMALG00000000089	prpf6	100	86.574	Monopterus_albus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSMUSG00000002455	Prpf6	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	MGP_PahariEiJ_G0026262	Prpf6	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	MGP_SPRETEiJ_G0025741	Prpf6	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSMPUG00000008673	PRPF6	99	90.584	Mustela_putorius_furo
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSNGAG00000003365	Prpf6	100	93.092	Nannospalax_galili
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSNBRG00000015025	prpf6	96	87.035	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSNLEG00000010208	PRPF6	100	91.498	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024814	Prpf6	100	88.353	ENSMEUG00000009824	-	90	88.538	Notamacropus_eugenii
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSODEG00000004841	PRPF6	100	86.929	Octodon_degus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSONIG00000017406	prpf6	96	86.929	Oreochromis_niloticus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSOANG00000004920	PRPF6	100	91.817	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSOCUG00000014151	PRPF6	100	90.558	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0024814	Prpf6	100	90.741	ENSORLG00000009592	prpf6	96	86.291	Oryzias_latipes
MGP_CAROLIEiJ_G0024814	Prpf6	100	92.593	ENSORLG00020001458	prpf6	96	86.397	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0024814	Prpf6	100	92.593	ENSORLG00015018762	prpf6	96	86.397	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSOMEG00000012174	prpf6	96	86.716	Oryzias_melastigma
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSOGAG00000007573	PRPF6	100	89.366	Otolemur_garnettii
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSOARG00000008776	PRPF6	99	91.286	Ovis_aries
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPPAG00000008686	PRPF6	100	91.605	Pan_paniscus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSPPRG00000008497	PRPF6	100	91.923	Panthera_pardus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSPTIG00000011184	PRPF6	97	91.712	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPTRG00000013765	PRPF6	100	91.605	Pan_troglodytes
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPANG00000024135	PRPF6	100	90.967	Papio_anubis
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSPKIG00000005627	prpf6	99	88.417	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPSIG00000007717	PRPF6	100	91.270	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0024814	Prpf6	100	84.648	ENSPMGG00000008925	prpf6	96	85.394	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPEMG00000016036	Prpf6	100	93.092	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024814	Prpf6	99	81.828	ENSPMAG00000006144	prpf6	99	82.147	Petromyzon_marinus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPCIG00000017909	PRPF6	100	91.923	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSPFOG00000006431	prpf6	96	87.460	Poecilia_formosa
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSPLAG00000005974	prpf6	96	87.354	Poecilia_latipinna
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSPMEG00000009977	prpf6	96	87.566	Poecilia_mexicana
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSPREG00000017993	prpf6	92	87.460	Poecilia_reticulata
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPPYG00000011256	PRPF6	100	91.073	Pongo_abelii
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSPCAG00000006536	PRPF6	88	98.230	Procavia_capensis
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSPCOG00000016881	PRPF6	100	91.923	Propithecus_coquereli
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSPVAG00000014316	PRPF6	100	85.972	Pteropus_vampyrus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSPNYG00000001939	prpf6	96	84.879	Pundamilia_nyererei
MGP_CAROLIEiJ_G0024814	Prpf6	100	86.823	ENSPNAG00000015606	prpf6	96	87.673	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSRNOG00000051498	Prpf6	100	93.092	Rattus_norvegicus
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSRBIG00000043613	PRPF6	100	91.498	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSRROG00000040969	PRPF6	100	88.360	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSSBOG00000020632	PRPF6	93	90.018	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSSHAG00000016810	PRPF6	100	91.923	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSSFOG00015020859	prpf6	100	88.507	Scleropages_formosus
MGP_CAROLIEiJ_G0024814	Prpf6	100	90.741	ENSSMAG00000008112	prpf6	96	85.760	Scophthalmus_maximus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSSDUG00000016142	prpf6	96	86.823	Seriola_dumerili
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSSLDG00000025283	prpf6	100	83.316	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSSPUG00000018260	PRPF6	100	89.796	Sphenodon_punctatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSSPAG00000015850	prpf6	96	86.823	Stegastes_partitus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSSSCG00000029119	PRPF6	100	91.156	Sus_scrofa
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSTGUG00000007221	PRPF6	99	91.605	Taeniopygia_guttata
MGP_CAROLIEiJ_G0024814	Prpf6	100	84.910	ENSTRUG00000002920	prpf6	96	85.760	Takifugu_rubripes
MGP_CAROLIEiJ_G0024814	Prpf6	87	92.920	ENSTNIG00000017873	prpf6	83	96.667	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	ENSTBEG00000005348	PRPF6	77	94.175	Tupaia_belangeri
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSTTRG00000013068	PRPF6	100	91.180	Tursiops_truncatus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSUMAG00000021631	PRPF6	98	90.217	Ursus_maritimus
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSVVUG00000014948	PRPF6	100	92.136	Vulpes_vulpes
MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	ENSXETG00000012054	prpf6	97	89.904	Xenopus_tropicalis
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSXCOG00000008082	prpf6	96	87.566	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	ENSXMAG00000015581	prpf6	96	87.566	Xiphophorus_maculatus