EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024962 (Gene tree)
Gene ID: 110291106
Gene Symbol: Larp1b
Alias: 1700108L22Rik|4933421B21Rik|Larp2
Full Name: la-related protein 1B-like
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 101396 bases
Position: chr3:35491763-35593158
Accession: 110291105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0057494	La	PF05383.17	2.3e-22	1	1
MGP_CAROLIEiJ_P0057498	La	PF05383.17	2.3e-22	1	1
MGP_CAROLIEiJ_P0057495	La	PF05383.17	5.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0057495	-	1509	-	MGP_CAROLIEiJ_P0057495	288 (aa)	-	-
MGP_CAROLIEiJ_T0057494	-	2369	-	MGP_CAROLIEiJ_P0057494	335 (aa)	XP_021013719	UPI000A31628A
MGP_CAROLIEiJ_T0057497	-	103	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057496	-	374	-	MGP_CAROLIEiJ_P0057496	14 (aa)	-	UPI000620A999
MGP_CAROLIEiJ_T0057503	-	1563	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057502	-	4089	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057501	-	1917	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057500	-	622	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057505	-	328	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057499	-	1599	-	MGP_CAROLIEiJ_P0057499	369 (aa)	-	-
MGP_CAROLIEiJ_T0057498	-	1586	-	MGP_CAROLIEiJ_P0057498	335 (aa)	XP_021013719	UPI000A31628A
MGP_CAROLIEiJ_T0057506	-	1475	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057504	-	732	-	MGP_CAROLIEiJ_P0057504	243 (aa)	XP_021013721	UPI000A3199A7
MGP_CAROLIEiJ_T0057507	-	159	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024962	Larp1b	100	87.463	ENSG00000138709	LARP1B	100	87.463	Homo_sapiens
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.552	ENSAMEG00000002748	LARP1B	100	89.552	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0024962	Larp1b	99	76.737	ENSANAG00000034618	LARP1B	96	76.737	Aotus_nancymaae
MGP_CAROLIEiJ_G0024962	Larp1b	98	87.576	ENSBTAG00000012135	LARP1B	67	85.227	Bos_taurus
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.552	ENSCJAG00000003338	LARP1B	100	89.552	Callithrix_jacchus
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.583	ENSCAFG00020018899	LARP1B	100	89.583	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.235	ENSCHIG00000023144	LARP1B	100	88.235	Capra_hircus
MGP_CAROLIEiJ_G0024962	Larp1b	99	85.366	ENSTSYG00000002037	-	99	85.366	Carlito_syrichta
MGP_CAROLIEiJ_G0024962	Larp1b	76	93.750	ENSCPOG00000034668	-	93	93.750	Cavia_porcellus
MGP_CAROLIEiJ_G0024962	Larp1b	99	88.922	ENSCCAG00000021948	LARP1B	99	88.922	Cebus_capucinus
MGP_CAROLIEiJ_G0024962	Larp1b	100	85.075	ENSCATG00000013541	LARP1B	100	85.075	Cercocebus_atys
MGP_CAROLIEiJ_G0024962	Larp1b	100	85.069	ENSCLAG00000006448	-	100	85.069	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.194	ENSCANG00000026958	LARP1B	100	88.194	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024962	Larp1b	100	95.522	ENSCGRG00001004660	-	100	95.522	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024962	Larp1b	100	95.224	ENSCGRG00000001914	-	100	95.224	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024962	Larp1b	98	87.538	ENSDNOG00000018765	-	69	84.659	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024962	Larp1b	99	89.547	ENSEASG00005018106	LARP1B	99	89.547	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.254	ENSFCAG00000014650	-	100	89.254	Felis_catus
MGP_CAROLIEiJ_G0024962	Larp1b	100	87.463	ENSGGOG00000015900	LARP1B	100	87.463	Gorilla_gorilla
MGP_CAROLIEiJ_G0024962	Larp1b	100	85.274	ENSHGLG00000006728	-	99	85.616	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024962	Larp1b	98	73.556	ENSHGLG00000013922	-	96	72.036	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024962	Larp1b	98	73.556	ENSHGLG00100016491	-	96	72.036	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024962	Larp1b	100	86.111	ENSHGLG00100014041	-	95	86.111	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.581	ENSSTOG00000008596	-	100	88.581	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024962	Larp1b	90	74.131	ENSSTOG00000033183	-	96	73.600	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024962	Larp1b	96	71.028	ENSSTOG00000034510	-	87	71.028	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024962	Larp1b	99	80.665	ENSSTOG00000021917	-	94	80.060	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024962	Larp1b	99	89.547	ENSJJAG00000022360	Larp1b	99	89.547	Jaculus_jaculus
MGP_CAROLIEiJ_G0024962	Larp1b	98	70.393	ENSLACG00000015247	LARP1B	85	69.369	Latimeria_chalumnae
MGP_CAROLIEiJ_G0024962	Larp1b	99	90.476	ENSLAFG00000008473	-	99	90.476	Loxodonta_africana
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.657	ENSMFAG00000002218	LARP1B	100	88.657	Macaca_fascicularis
MGP_CAROLIEiJ_G0024962	Larp1b	100	64.583	ENSMFAG00000003306	-	93	85.517	Macaca_fascicularis
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.657	ENSMMUG00000021347	LARP1B	100	88.657	Macaca_mulatta
MGP_CAROLIEiJ_G0024962	Larp1b	65	86.713	ENSMNEG00000027747	-	89	86.713	Macaca_nemestrina
MGP_CAROLIEiJ_G0024962	Larp1b	84	54.959	ENSMZEG00005002545	larp1b	55	53.791	Maylandia_zebra
MGP_CAROLIEiJ_G0024962	Larp1b	100	94.925	ENSMAUG00000007879	-	100	94.925	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024962	Larp1b	100	91.045	ENSMICG00000036111	LARP1B	100	91.045	Microcebus_murinus
MGP_CAROLIEiJ_G0024962	Larp1b	97	68.405	ENSMICG00000028052	-	68	67.236	Microcebus_murinus
MGP_CAROLIEiJ_G0024962	Larp1b	98	80.769	ENSMICG00000037883	-	88	80.769	Microcebus_murinus
MGP_CAROLIEiJ_G0024962	Larp1b	79	95.817	ENSMOCG00000001490	Larp1b	95	95.817	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024962	Larp1b	100	98.507	ENSMUSG00000025762	Larp1b	100	98.507	Mus_musculus
MGP_CAROLIEiJ_G0024962	Larp1b	100	97.015	MGP_PahariEiJ_G0026403	Larp1b	100	97.015	Mus_pahari
MGP_CAROLIEiJ_G0024962	Larp1b	100	98.507	MGP_SPRETEiJ_G0025897	Larp1b	100	98.507	Mus_spretus
MGP_CAROLIEiJ_G0024962	Larp1b	100	87.761	ENSNLEG00000013819	LARP1B	100	87.761	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024962	Larp1b	100	85.417	ENSODEG00000001292	-	100	85.417	Octodon_degus
MGP_CAROLIEiJ_G0024962	Larp1b	100	87.164	ENSPPAG00000030439	LARP1B	100	87.164	Pan_paniscus
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.254	ENSPPRG00000002743	-	100	89.254	Panthera_pardus
MGP_CAROLIEiJ_G0024962	Larp1b	100	89.254	ENSPTIG00000011225	LARP1B	100	89.254	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024962	Larp1b	100	87.463	ENSPTRG00000016437	LARP1B	100	87.463	Pan_troglodytes
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.358	ENSPANG00000012488	LARP1B	100	88.358	Papio_anubis
MGP_CAROLIEiJ_G0024962	Larp1b	99	82.985	ENSPCIG00000026516	LARP1B	87	83.636	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0024962	Larp1b	99	51.226	ENSPFOG00000022837	-	52	50.954	Poecilia_formosa
MGP_CAROLIEiJ_G0024962	Larp1b	79	59.649	ENSPREG00000005955	-	89	55.634	Poecilia_reticulata
MGP_CAROLIEiJ_G0024962	Larp1b	100	90.149	ENSPCOG00000021874	LARP1B	100	90.149	Propithecus_coquereli
MGP_CAROLIEiJ_G0024962	Larp1b	100	96.418	ENSRNOG00000038366	Larp1b	100	96.418	Rattus_norvegicus
MGP_CAROLIEiJ_G0024962	Larp1b	100	86.269	ENSRBIG00000039982	-	100	85.075	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024962	Larp1b	100	79.403	ENSRBIG00000038568	-	92	79.403	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024962	Larp1b	100	88.657	ENSRROG00000030771	LARP1B	100	88.657	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024962	Larp1b	100	80.623	ENSRROG00000038525	-	96	80.623	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024962	Larp1b	98	85.152	ENSSHAG00000014474	LARP1B	53	83.569	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0024962	Larp1b	98	71.299	ENSSPUG00000011837	LARP1B	50	70.339	Sphenodon_punctatus
MGP_CAROLIEiJ_G0024962	Larp1b	98	87.538	ENSSSCG00000034280	LARP1B	67	85.470	Sus_scrofa
MGP_CAROLIEiJ_G0024962	Larp1b	99	53.310	ENSSSCG00000040491	-	99	54.355	Sus_scrofa
MGP_CAROLIEiJ_G0024962	Larp1b	100	79.701	ENSUAMG00000016938	-	91	91.716	Ursus_americanus
MGP_CAROLIEiJ_G0024962	Larp1b	98	88.754	ENSVVUG00000011307	LARP1B	69	85.227	Vulpes_vulpes