EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0024968 (Gene tree)
Gene ID: 110291610
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 6005 bases
Position: chr3:40505519-40511523
Accession: 110291610
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0057551	RRM_5	PF13893.6	1.7e-13	1	3
MGP_CAROLIEiJ_P0057551	RRM_5	PF13893.6	1.7e-13	2	3
MGP_CAROLIEiJ_P0057551	RRM_5	PF13893.6	1.7e-13	3	3
MGP_CAROLIEiJ_P0057552	RRM_5	PF13893.6	1.7e-13	1	3
MGP_CAROLIEiJ_P0057552	RRM_5	PF13893.6	1.7e-13	2	3
MGP_CAROLIEiJ_P0057552	RRM_5	PF13893.6	1.7e-13	3	3
MGP_CAROLIEiJ_P0057551	RRM_1	PF00076.22	1.2e-83	1	4
MGP_CAROLIEiJ_P0057551	RRM_1	PF00076.22	1.2e-83	2	4
MGP_CAROLIEiJ_P0057551	RRM_1	PF00076.22	1.2e-83	3	4
MGP_CAROLIEiJ_P0057551	RRM_1	PF00076.22	1.2e-83	4	4
MGP_CAROLIEiJ_P0057552	RRM_1	PF00076.22	1.2e-83	1	4
MGP_CAROLIEiJ_P0057552	RRM_1	PF00076.22	1.2e-83	2	4
MGP_CAROLIEiJ_P0057552	RRM_1	PF00076.22	1.2e-83	3	4
MGP_CAROLIEiJ_P0057552	RRM_1	PF00076.22	1.2e-83	4	4
MGP_CAROLIEiJ_P0057553	RRM_1	PF00076.22	8.4e-41	1	2
MGP_CAROLIEiJ_P0057553	RRM_1	PF00076.22	8.4e-41	2	2
MGP_CAROLIEiJ_P0057554	RRM_1	PF00076.22	1.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0057554	-	465	-	MGP_CAROLIEiJ_P0057554	50 (aa)	-	-
MGP_CAROLIEiJ_T0057551	-	5222	-	MGP_CAROLIEiJ_P0057551	370 (aa)	-	UPI000A319DDB
MGP_CAROLIEiJ_T0057552	-	5174	XM_021158836	MGP_CAROLIEiJ_P0057552	370 (aa)	XP_021014495	UPI000A319DDB
MGP_CAROLIEiJ_T0057553	-	721	-	MGP_CAROLIEiJ_P0057553	172 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0024968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0024968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0024968	Pabpc4l	97	30.065	MGP_CAROLIEiJ_G0026289	Elavl4	70	35.484
MGP_CAROLIEiJ_G0024968	Pabpc4l	83	35.714	MGP_CAROLIEiJ_G0032914	-	87	35.714
MGP_CAROLIEiJ_G0024968	Pabpc4l	96	39.773	MGP_CAROLIEiJ_G0025365	Sf3b4	54	39.773
MGP_CAROLIEiJ_G0024968	Pabpc4l	94	30.263	MGP_CAROLIEiJ_G0030798	Elavl1	92	30.263
MGP_CAROLIEiJ_G0024968	Pabpc4l	98	70.482	MGP_CAROLIEiJ_G0026435	-	100	71.014
MGP_CAROLIEiJ_G0024968	Pabpc4l	65	33.333	MGP_CAROLIEiJ_G0023949	Celf1	52	39.683
MGP_CAROLIEiJ_G0024968	Pabpc4l	98	65.089	MGP_CAROLIEiJ_G0021058	Pabpc6	58	65.089
MGP_CAROLIEiJ_G0024968	Pabpc4l	96	34.940	MGP_CAROLIEiJ_G0026159	Elavl2	89	34.940
MGP_CAROLIEiJ_G0024968	Pabpc4l	89	31.250	MGP_CAROLIEiJ_G0026563	Trnau1ap	80	36.486
MGP_CAROLIEiJ_G0024968	Pabpc4l	97	69.325	MGP_CAROLIEiJ_G0022217	Pabpc2	60	69.325
MGP_CAROLIEiJ_G0024968	Pabpc4l	97	69.880	MGP_CAROLIEiJ_G0019740	Pabpc1	55	69.880
MGP_CAROLIEiJ_G0024968	Pabpc4l	97	58.146	MGP_CAROLIEiJ_G0033367	Pabpc5	96	58.242
MGP_CAROLIEiJ_G0024968	Pabpc4l	94	34.545	MGP_CAROLIEiJ_G0030548	Tial1	99	32.847
MGP_CAROLIEiJ_G0024968	Pabpc4l	98	61.350	MGP_CAROLIEiJ_G0024627	Pabpc1l	59	61.350
MGP_CAROLIEiJ_G0024968	Pabpc4l	98	36.145	MGP_CAROLIEiJ_G0031894	Elavl3	90	36.145
MGP_CAROLIEiJ_G0024968	Pabpc4l	95	30.539	MGP_CAROLIEiJ_G0028595	Tia1	95	30.000
MGP_CAROLIEiJ_G0024968	Pabpc4l	97	69.608	MGP_CAROLIEiJ_G0024864	-	56	66.667
MGP_CAROLIEiJ_G0024968	Pabpc4l	95	39.062	MGP_CAROLIEiJ_G0023161	Celf2	66	35.802

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	81.081	ENSG00000254535	PABPC4L	100	81.081	Homo_sapiens
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	82.000	ENSANAG00000017199	PABPC4L	87	80.270	Aotus_nancymaae
MGP_CAROLIEiJ_G0024968	Pabpc4l	99	79.133	ENSBTAG00000046902	PABPC4L	99	79.133	Bos_taurus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.811	ENSCJAG00000045332	PABPC4L	86	80.811	Callithrix_jacchus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	74.000	ENSCAFG00020019182	-	55	71.512	Canis_lupus_dingo
MGP_CAROLIEiJ_G0024968	Pabpc4l	99	79.133	ENSCHIG00000007231	PABPC4L	99	79.133	Capra_hircus
MGP_CAROLIEiJ_G0024968	Pabpc4l	98	73.134	ENSCAPG00000000555	PABPC4L	100	73.134	Cavia_aperea
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	70.270	ENSCPOG00000033167	PABPC4L	100	70.270	Cavia_porcellus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.541	ENSCCAG00000031681	PABPC4L	86	80.541	Cebus_capucinus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	79.070	ENSCLAG00000017628	PABPC4L	99	79.070	Chinchilla_lanigera
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	82.000	ENSCANG00000037677	PABPC4L	99	80.814	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.000	ENSCGRG00001002070	Pabpc4l	100	87.838	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.000	ENSCGRG00000020086	Pabpc4l	100	87.838	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	79.189	ENSDNOG00000031077	PABPC4L	95	79.189	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSEASG00005007883	PABPC4L	99	79.070	Equus_asinus_asinus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSECAG00000031416	PABPC4L	99	79.070	Equus_caballus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSFCAG00000028270	PABPC4L	99	78.862	Felis_catus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	74.419	ENSFDAG00000019606	PABPC4L	99	74.419	Fukomys_damarensis
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.541	ENSGGOG00000024991	PABPC4L	100	80.541	Gorilla_gorilla
MGP_CAROLIEiJ_G0024968	Pabpc4l	99	75.881	ENSHGLG00000020104	PABPC4L	99	75.881	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0024968	Pabpc4l	99	75.881	ENSHGLG00100020648	PABPC4L	99	75.881	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	79.784	ENSSTOG00000019472	PABPC4L	99	79.784	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	84.000	ENSJJAG00000004090	Pabpc4l	99	77.507	Jaculus_jaculus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.000	ENSMAUG00000016313	Pabpc4l	100	88.108	Mesocricetus_auratus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSMICG00000029683	PABPC4L	100	80.000	Microcebus_murinus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	90.000	ENSMOCG00000007551	Pabpc4l	100	89.189	Microtus_ochrogaster
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.649	ENSMUSG00000090919	Pabpc4l	100	98.649	Mus_musculus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.378	MGP_PahariEiJ_G0026409	Pabpc4l	100	98.378	Mus_pahari
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	98.108	MGP_SPRETEiJ_G0025903	Pabpc4l	100	98.108	Mus_spretus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	75.581	ENSMLUG00000008254	PABPC4L	99	75.581	Myotis_lucifugus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	86.000	ENSNGAG00000001502	Pabpc4l	100	85.135	Nannospalax_galili
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.811	ENSNLEG00000019300	PABPC4L	100	80.811	Nomascus_leucogenys
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	78.000	ENSOGAG00000026166	PABPC4L	100	74.324	Otolemur_garnettii
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	ENSPPAG00000043745	PABPC4L	93	80.495	Pan_paniscus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSPPRG00000018628	PABPC4L	99	78.591	Panthera_pardus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSPTIG00000010106	PABPC4L	99	78.862	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	ENSPTRG00000045513	-	78	80.495	Pan_troglodytes
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	90.000	ENSPEMG00000012565	Pabpc4l	100	88.919	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.541	ENSPCOG00000025578	PABPC4L	100	80.541	Propithecus_coquereli
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.973	ENSRNOG00000029749	Pabpc4l	100	92.973	Rattus_norvegicus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	ENSRBIG00000030229	PABPC4L	99	80.233	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.233	ENSRROG00000020367	PABPC4L	99	80.233	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.270	ENSSBOG00000016382	PABPC4L	100	80.270	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	ENSSSCG00000009067	PABPC4L	99	72.900	Sus_scrofa
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	78.488	ENSUAMG00000001289	PABPC4L	99	78.591	Ursus_americanus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	78.488	ENSUMAG00000014887	PABPC4L	99	78.591	Ursus_maritimus
MGP_CAROLIEiJ_G0024968	Pabpc4l	100	72.000	ENSVVUG00000011060	-	75	68.902	Vulpes_vulpes