EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025052 (Gene tree)
Gene ID: 110291473
Gene Symbol: Gfm1
Alias: D3Wsu133e
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 43159 bases
Position: chr3:60956141-60999299
Accession: 110291473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0057931	GTP_EFTU	PF00009.27	3.2e-63	1	1
MGP_CAROLIEiJ_P0057931	GTP_EFTU_D2	PF03144.25	8.9e-17	1	1
MGP_CAROLIEiJ_P0057931	EFG_IV	PF03764.18	1.5e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0057932	-	1961	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0057933	-	1605	-	MGP_CAROLIEiJ_P0057933	534 (aa)	-	-
MGP_CAROLIEiJ_T0057931	-	4033	-	MGP_CAROLIEiJ_P0057931	751 (aa)	XP_021014304	UPI000A317B48
MGP_CAROLIEiJ_T0057934	-	913	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025052's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0025052	Gfm1	73	38.926	MGP_CAROLIEiJ_G0015622	Eef2	73	38.926
MGP_CAROLIEiJ_G0025052	Gfm1	70	32.692	MGP_CAROLIEiJ_G0027274	Guf1	68	32.692
MGP_CAROLIEiJ_G0025052	Gfm1	92	37.643	MGP_CAROLIEiJ_G0018814	Gfm2	92	34.993

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.033	ENSG00000168827	GFM1	100	98.333	Homo_sapiens
MGP_CAROLIEiJ_G0025052	Gfm1	94	82.200	ENSAPOG00000016489	gfm1	96	79.491	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.016	ENSAMEG00000013542	GFM1	100	91.645	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025052	Gfm1	95	76.602	ENSACIG00000014465	gfm1	93	76.602	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025052	Gfm1	94	82.200	ENSAOCG00000006023	gfm1	95	80.899	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025052	Gfm1	94	82.200	ENSAPEG00000024499	gfm1	98	80.618	Amphiprion_percula
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.652	ENSATEG00000013789	gfm1	100	78.562	Anabas_testudineus
MGP_CAROLIEiJ_G0025052	Gfm1	95	83.426	ENSAPLG00000005022	GFM1	99	83.426	Anas_platyrhynchos
MGP_CAROLIEiJ_G0025052	Gfm1	95	85.069	ENSACAG00000006829	GFM1	98	83.058	Anolis_carolinensis
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.584	ENSANAG00000035983	GFM1	100	90.584	Aotus_nancymaae
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.287	ENSACLG00000016586	gfm1	98	80.694	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025052	Gfm1	100	79.361	ENSAMXG00000013435	gfm1	98	80.352	Astyanax_mexicanus
MGP_CAROLIEiJ_G0025052	Gfm1	100	93.227	ENSBTAG00000027795	GFM1	100	93.227	Bos_taurus
MGP_CAROLIEiJ_G0025052	Gfm1	97	59.470	WBGene00009246	gfm-1	99	54.886	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.981	ENSCJAG00000000363	GFM1	100	90.981	Callithrix_jacchus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.809	ENSCAFG00000009006	GFM1	100	94.083	Canis_familiaris
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.963	ENSCAFG00020005878	GFM1	99	93.785	Canis_lupus_dingo
MGP_CAROLIEiJ_G0025052	Gfm1	100	93.360	ENSCHIG00000015220	GFM1	100	93.360	Capra_hircus
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.501	ENSTSYG00000002013	GFM1	100	91.501	Carlito_syrichta
MGP_CAROLIEiJ_G0025052	Gfm1	98	79.784	ENSCAPG00000005699	GFM1	99	79.784	Cavia_aperea
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.849	ENSCPOG00000001194	GFM1	100	90.849	Cavia_porcellus
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.981	ENSCCAG00000025561	GFM1	100	90.981	Cebus_capucinus
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.584	ENSCATG00000037622	GFM1	100	90.584	Cercocebus_atys
MGP_CAROLIEiJ_G0025052	Gfm1	98	90.822	ENSCLAG00000002503	GFM1	99	90.361	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.451	ENSCSAG00000012162	GFM1	100	90.451	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025052	Gfm1	100	83.024	ENSCHOG00000004867	GFM1	100	83.024	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0025052	Gfm1	100	82.290	ENSCPBG00000018367	GFM1	99	82.290	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025052	Gfm1	95	59.059	ENSCING00000011960	-	94	59.059	Ciona_intestinalis
MGP_CAROLIEiJ_G0025052	Gfm1	95	59.778	ENSCSAVG00000008514	-	99	59.778	Ciona_savignyi
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.440	ENSCANG00000031714	GFM1	100	90.716	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	94.807	ENSCGRG00001022095	GFM1	100	94.807	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025052	Gfm1	100	94.807	ENSCGRG00000012043	GFM1	100	94.807	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025052	Gfm1	95	76.569	ENSCSEG00000017088	gfm1	98	76.569	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025052	Gfm1	100	79.963	ENSCVAG00000004126	gfm1	99	81.972	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	77.630	ENSDARG00000063624	gfm1	100	77.630	Danio_rerio
MGP_CAROLIEiJ_G0025052	Gfm1	54	89.242	ENSDNOG00000016385	-	100	89.242	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025052	Gfm1	100	89.533	ENSDORG00000014165	Gfm1	100	89.495	Dipodomys_ordii
MGP_CAROLIEiJ_G0025052	Gfm1	92	71.020	FBgn0263133	mEFG1	95	67.419	Drosophila_melanogaster
MGP_CAROLIEiJ_G0025052	Gfm1	98	81.916	ENSETEG00000019197	GFM1	100	81.614	Echinops_telfairi
MGP_CAROLIEiJ_G0025052	Gfm1	90	67.259	ENSEBUG00000012794	gfm1	99	67.259	Eptatretus_burgeri
MGP_CAROLIEiJ_G0025052	Gfm1	95	72.638	ENSEEUG00000000429	GFM1	99	68.552	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025052	Gfm1	100	77.497	ENSELUG00000014728	gfm1	100	77.497	Esox_lucius
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.963	ENSFCAG00000013291	GFM1	100	92.706	Felis_catus
MGP_CAROLIEiJ_G0025052	Gfm1	90	83.259	ENSFALG00000007619	GFM1	100	83.259	Ficedula_albicollis
MGP_CAROLIEiJ_G0025052	Gfm1	100	89.788	ENSFDAG00000016559	GFM1	100	89.788	Fukomys_damarensis
MGP_CAROLIEiJ_G0025052	Gfm1	100	79.361	ENSFHEG00000006091	gfm1	100	79.361	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025052	Gfm1	95	78.918	ENSGMOG00000010161	gfm1	99	78.918	Gadus_morhua
MGP_CAROLIEiJ_G0025052	Gfm1	98	81.608	ENSGALG00000009634	GFM1	99	81.608	Gallus_gallus
MGP_CAROLIEiJ_G0025052	Gfm1	100	80.337	ENSGAFG00000012527	gfm1	100	79.893	Gambusia_affinis
MGP_CAROLIEiJ_G0025052	Gfm1	99	77.660	ENSGACG00000009864	gfm1	99	77.660	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025052	Gfm1	51	68.727	ENSGAGG00000002769	-	90	90.355	Gopherus_agassizii
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.304	ENSGGOG00000003085	GFM1	100	90.584	Gorilla_gorilla
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.287	ENSHBUG00000002120	gfm1	96	82.287	Haplochromis_burtoni
MGP_CAROLIEiJ_G0025052	Gfm1	98	90.934	ENSHGLG00000016855	GFM1	100	90.053	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025052	Gfm1	98	90.934	ENSHGLG00100013049	GFM1	100	90.053	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025052	Gfm1	99	78.150	ENSHCOG00000007638	gfm1	97	80.692	Hippocampus_comes
MGP_CAROLIEiJ_G0025052	Gfm1	97	80.138	ENSIPUG00000005873	gfm1	100	78.296	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	89.362	ENSSTOG00000010150	GFM1	100	89.362	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.345	ENSJJAG00000016447	Gfm1	100	91.345	Jaculus_jaculus
MGP_CAROLIEiJ_G0025052	Gfm1	100	77.630	ENSKMAG00000020768	gfm1	100	77.630	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025052	Gfm1	99	78.987	ENSLBEG00000021315	gfm1	100	81.027	Labrus_bergylta
MGP_CAROLIEiJ_G0025052	Gfm1	100	79.627	ENSLACG00000012295	GFM1	100	79.627	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025052	Gfm1	95	76.462	ENSLOCG00000003778	gfm1	99	76.462	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025052	Gfm1	99	88.329	ENSLAFG00000010945	GFM1	100	88.414	Loxodonta_africana
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.849	ENSMFAG00000035731	GFM1	100	90.849	Macaca_fascicularis
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.981	ENSMMUG00000004961	GFM1	100	90.981	Macaca_mulatta
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.716	ENSMNEG00000033245	GFM1	100	90.716	Macaca_nemestrina
MGP_CAROLIEiJ_G0025052	Gfm1	96	89.931	ENSMLEG00000030908	GFM1	100	89.502	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025052	Gfm1	95	81.729	ENSMAMG00000011760	gfm1	96	81.729	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.287	ENSMZEG00005016639	gfm1	96	82.287	Maylandia_zebra
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.845	ENSMGAG00000010641	GFM1	96	82.845	Meleagris_gallopavo
MGP_CAROLIEiJ_G0025052	Gfm1	100	94.674	ENSMAUG00000000611	Gfm1	100	94.674	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.255	ENSMICG00000049086	GFM1	100	91.379	Microcebus_murinus
MGP_CAROLIEiJ_G0025052	Gfm1	100	94.940	ENSMOCG00000000465	Gfm1	100	94.940	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025052	Gfm1	95	80.335	ENSMMOG00000012538	gfm1	97	80.335	Mola_mola
MGP_CAROLIEiJ_G0025052	Gfm1	100	85.087	ENSMODG00000015673	GFM1	100	85.087	Monodelphis_domestica
MGP_CAROLIEiJ_G0025052	Gfm1	95	81.032	ENSMALG00000012508	gfm1	95	81.032	Monopterus_albus
MGP_CAROLIEiJ_G0025052	Gfm1	100	99.334	ENSMUSG00000027774	Gfm1	100	99.334	Mus_musculus
MGP_CAROLIEiJ_G0025052	Gfm1	100	98.502	MGP_PahariEiJ_G0026495	Gfm1	100	98.502	Mus_pahari
MGP_CAROLIEiJ_G0025052	Gfm1	100	99.438	MGP_SPRETEiJ_G0025994	Gfm1	100	99.438	Mus_spretus
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.512	ENSMPUG00000002859	GFM1	100	91.512	Mustela_putorius_furo
MGP_CAROLIEiJ_G0025052	Gfm1	100	92.175	ENSMLUG00000000452	GFM1	100	92.175	Myotis_lucifugus
MGP_CAROLIEiJ_G0025052	Gfm1	100	92.943	ENSNGAG00000012375	Gfm1	100	92.943	Nannospalax_galili
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.008	ENSNBRG00000004631	gfm1	98	82.008	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.440	ENSNLEG00000004176	GFM1	100	90.716	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025052	Gfm1	95	79.604	ENSMEUG00000007784	GFM1	100	78.801	Notamacropus_eugenii
MGP_CAROLIEiJ_G0025052	Gfm1	100	88.830	ENSOPRG00000009860	GFM1	100	88.830	Ochotona_princeps
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.571	ENSODEG00000004316	GFM1	100	90.716	Octodon_degus
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.287	ENSONIG00000003772	gfm1	96	82.287	Oreochromis_niloticus
MGP_CAROLIEiJ_G0025052	Gfm1	98	93.234	ENSOCUG00000013561	GFM1	100	92.706	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025052	Gfm1	94	81.921	ENSORLG00000006487	gfm1	100	81.921	Oryzias_latipes
MGP_CAROLIEiJ_G0025052	Gfm1	95	81.590	ENSORLG00020003362	gfm1	96	81.590	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0025052	Gfm1	95	81.172	ENSORLG00015005829	gfm1	96	81.172	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.008	ENSOMEG00000012894	gfm1	96	82.008	Oryzias_melastigma
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.061	ENSOGAG00000008298	GFM1	100	90.849	Otolemur_garnettii
MGP_CAROLIEiJ_G0025052	Gfm1	96	93.398	ENSOARG00000002409	GFM1	100	93.398	Ovis_aries
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.304	ENSPPAG00000033881	GFM1	100	90.584	Pan_paniscus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.828	ENSPPRG00000009281	GFM1	100	92.573	Panthera_pardus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.693	ENSPTIG00000012416	GFM1	100	92.440	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.304	ENSPTRG00000015570	GFM1	100	90.584	Pan_troglodytes
MGP_CAROLIEiJ_G0025052	Gfm1	100	90.716	ENSPANG00000016512	GFM1	100	90.716	Papio_anubis
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.562	ENSPKIG00000004876	gfm1	100	78.562	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0025052	Gfm1	100	81.092	ENSPSIG00000012567	GFM1	99	81.092	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025052	Gfm1	95	79.277	ENSPMGG00000014068	gfm1	99	79.277	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	94.807	ENSPEMG00000008942	Gfm1	100	94.807	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025052	Gfm1	99	85.393	ENSPCIG00000020195	GFM1	98	85.179	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025052	Gfm1	100	80.426	ENSPFOG00000011022	gfm1	100	80.426	Poecilia_formosa
MGP_CAROLIEiJ_G0025052	Gfm1	100	80.150	ENSPLAG00000019585	gfm1	100	79.860	Poecilia_latipinna
MGP_CAROLIEiJ_G0025052	Gfm1	100	80.293	ENSPMEG00000012376	gfm1	100	80.293	Poecilia_mexicana
MGP_CAROLIEiJ_G0025052	Gfm1	100	80.027	ENSPREG00000001332	gfm1	95	80.027	Poecilia_reticulata
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.576	ENSPPYG00000014244	GFM1	100	90.849	Pongo_abelii
MGP_CAROLIEiJ_G0025052	Gfm1	93	87.340	ENSPCAG00000008934	GFM1	100	87.340	Procavia_capensis
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.391	ENSPCOG00000022259	GFM1	100	91.645	Propithecus_coquereli
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.512	ENSPVAG00000013605	GFM1	100	91.512	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025052	Gfm1	95	82.008	ENSPNYG00000006037	gfm1	97	82.008	Pundamilia_nyererei
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.695	ENSPNAG00000001237	gfm1	100	78.695	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025052	Gfm1	100	95.206	ENSRNOG00000012873	Gfm1	100	95.206	Rattus_norvegicus
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.304	ENSRBIG00000031363	GFM1	100	90.584	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025052	Gfm1	98	91.440	ENSRROG00000031081	GFM1	100	90.716	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025052	Gfm1	91	60.896	YLR069C	-	90	56.547	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.379	ENSSBOG00000023252	GFM1	100	91.379	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025052	Gfm1	99	87.146	ENSSHAG00000017772	GFM1	99	86.595	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.429	ENSSFOG00015003117	gfm1	99	80.552	Scleropages_formosus
MGP_CAROLIEiJ_G0025052	Gfm1	100	77.364	ENSSMAG00000013221	gfm1	100	76.831	Scophthalmus_maximus
MGP_CAROLIEiJ_G0025052	Gfm1	98	78.940	ENSSDUG00000018665	gfm1	96	80.474	Seriola_dumerili
MGP_CAROLIEiJ_G0025052	Gfm1	98	78.833	ENSSLDG00000020606	gfm1	96	80.474	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025052	Gfm1	94	82.600	ENSSPUG00000018686	GFM1	97	81.311	Sphenodon_punctatus
MGP_CAROLIEiJ_G0025052	Gfm1	100	77.630	ENSSPAG00000008800	gfm1	96	80.474	Stegastes_partitus
MGP_CAROLIEiJ_G0025052	Gfm1	100	91.512	ENSSSCG00000025651	GFM1	100	91.512	Sus_scrofa
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.277	ENSTRUG00000009244	gfm1	100	77.763	Takifugu_rubripes
MGP_CAROLIEiJ_G0025052	Gfm1	100	78.296	ENSTNIG00000007729	gfm1	100	78.296	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025052	Gfm1	98	77.598	ENSTBEG00000017404	GFM1	100	77.513	Tupaia_belangeri
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.141	ENSTTRG00000001735	GFM1	100	90.753	Tursiops_truncatus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.422	ENSUAMG00000026381	GFM1	100	92.042	Ursus_americanus
MGP_CAROLIEiJ_G0025052	Gfm1	98	92.422	ENSUMAG00000011268	GFM1	100	92.042	Ursus_maritimus
MGP_CAROLIEiJ_G0025052	Gfm1	100	88.712	ENSVPAG00000009444	GFM1	100	88.712	Vicugna_pacos
MGP_CAROLIEiJ_G0025052	Gfm1	99	91.589	ENSVVUG00000020091	GFM1	100	93.639	Vulpes_vulpes
MGP_CAROLIEiJ_G0025052	Gfm1	100	82.314	ENSXETG00000032551	GFM1	100	82.314	Xenopus_tropicalis
MGP_CAROLIEiJ_G0025052	Gfm1	72	82.124	ENSXCOG00000012590	gfm1	89	82.124	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0025052	Gfm1	100	79.963	ENSXMAG00000000261	gfm1	100	79.760	Xiphophorus_maculatus