EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0025163 (Gene tree)
Gene ID
110290762
Gene Symbol
Smg5
Alias
-
Full Name
SMG5%2C nonsense mediated mRNA decay factor
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Plus strand
Length
27693 bases
Position
chr3:81111250-81138942
Accession
110290762
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0058390EST1PF10374.91.4e-2311
MGP_CAROLIEiJ_P0058390EST1_DNA_bindPF10373.93.3e-3912
MGP_CAROLIEiJ_P0058390EST1_DNA_bindPF10373.93.3e-3922
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0058398-424--- (aa)--
MGP_CAROLIEiJ_T0058393-787--- (aa)--
MGP_CAROLIEiJ_T0058392-753--- (aa)--
MGP_CAROLIEiJ_T0058391-3014--- (aa)--
MGP_CAROLIEiJ_T0058390-4451XM_021157488MGP_CAROLIEiJ_P00583901017 (aa)XP_021013147UPI000A318AAA
MGP_CAROLIEiJ_T0058397-833--- (aa)--
MGP_CAROLIEiJ_T0058396-759--- (aa)--
MGP_CAROLIEiJ_T0058395-820--- (aa)--
MGP_CAROLIEiJ_T0058394-1010-MGP_CAROLIEiJ_P0058394179 (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0025163's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025163's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0025163Smg510098.883ENSG00000198952SMG510092.534Homo_sapiens
MGP_CAROLIEiJ_G0025163Smg510088.268ENSAPOG00000019690smg59966.995Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0025163Smg510097.765ENSAMEG00000014458SMG510088.945Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025163Smg510088.268ENSACIG00000001353smg59965.577Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSAOCG00000019483smg59960.963Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025163Smg510088.268ENSAPEG00000022949smg59866.335Amphiprion_percula
MGP_CAROLIEiJ_G0025163Smg510088.827ENSATEG00000005348smg59966.408Anabas_testudineus
MGP_CAROLIEiJ_G0025163Smg510096.648ENSAPLG00000010263SMG510077.507Anas_platyrhynchos
MGP_CAROLIEiJ_G0025163Smg510098.883ENSANAG00000032899SMG510092.338Aotus_nancymaae
MGP_CAROLIEiJ_G0025163Smg510088.268ENSACLG00000009311smg59966.409Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025163Smg510088.268ENSAMXG00000024616smg59962.976Astyanax_mexicanus
MGP_CAROLIEiJ_G0025163Smg510058.011ENSBTAG00000021747-9943.188Bos_taurus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSBTAG00000009435SMG510091.650Bos_taurus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCJAG00000005684SMG510092.240Callithrix_jacchus
MGP_CAROLIEiJ_G0025163Smg510098.324ENSCAFG00000016839SMG510090.954Canis_familiaris
MGP_CAROLIEiJ_G0025163Smg510098.324ENSCAFG00020006061SMG510090.954Canis_lupus_dingo
MGP_CAROLIEiJ_G0025163Smg510057.459ENSCHIG00000006323-9943.597Capra_hircus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCHIG00000007709SMG510091.552Capra_hircus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSTSYG00000004099SMG510091.757Carlito_syrichta
MGP_CAROLIEiJ_G0025163Smg59771.400ENSCAPG00000003631SMG510072.482Cavia_aperea
MGP_CAROLIEiJ_G0025163Smg510097.765ENSCPOG00000015696SMG510091.945Cavia_porcellus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCCAG00000027409SMG510091.945Cebus_capucinus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCATG00000030539SMG510092.731Cercocebus_atys
MGP_CAROLIEiJ_G0025163Smg510098.324ENSCLAG00000003983SMG510092.338Chinchilla_lanigera
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCSAG00000002120SMG510092.633Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025163Smg510080.447ENSCHOG00000008741-5789.416Choloepus_hoffmanni
MGP_CAROLIEiJ_G0025163Smg59696.491ENSCPBG00000025848SMG510077.157Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025163Smg510043.646ENSCING00000008706-9934.769Ciona_intestinalis
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCANG00000029208SMG510088.409Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCGRG00001006336Smg510097.542Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025163Smg510057.778ENSCGRG00001000584-7454.950Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025163Smg510057.778ENSCGRG00000009566-8854.703Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025163Smg510098.883ENSCGRG00000005111Smg510097.581Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025163Smg510088.268ENSCSEG00000014220smg59965.717Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025163Smg510066.667ENSCVAG00000000529smg59961.035Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSDARG00000041481smg59963.628Danio_rerio
MGP_CAROLIEiJ_G0025163Smg510098.883ENSDNOG00000000051SMG510088.212Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025163Smg59944.382ENSDNOG00000039862-10035.911Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSDORG00000010382Smg510091.061Dipodomys_ordii
MGP_CAROLIEiJ_G0025163Smg57533.962FBgn0019890Smg56233.962Drosophila_melanogaster
MGP_CAROLIEiJ_G0025163Smg510098.883ENSETEG00000010336SMG59193.204Echinops_telfairi
MGP_CAROLIEiJ_G0025163Smg510064.804ENSEBUG00000003739smg59848.038Eptatretus_burgeri
MGP_CAROLIEiJ_G0025163Smg510098.883ENSEASG00005019122SMG510091.650Equus_asinus_asinus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSECAG00000001389SMG510091.650Equus_caballus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSEEUG00000012690SMG57496.254Erinaceus_europaeus
MGP_CAROLIEiJ_G0025163Smg510087.709ENSELUG00000012585smg59965.024Esox_lucius
MGP_CAROLIEiJ_G0025163Smg510098.324ENSFCAG00000011783SMG510090.570Felis_catus
MGP_CAROLIEiJ_G0025163Smg510095.580ENSFALG00000001166-9980.467Ficedula_albicollis
MGP_CAROLIEiJ_G0025163Smg510098.324ENSFDAG00000017388SMG510090.030Fukomys_damarensis
MGP_CAROLIEiJ_G0025163Smg510088.268ENSFHEG00000013939smg510061.554Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025163Smg510088.827ENSGMOG00000007310smg59961.038Gadus_morhua
MGP_CAROLIEiJ_G0025163Smg510096.648ENSGALG00000029918-10076.711Gallus_gallus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSGAFG00000021691smg59968.371Gambusia_affinis
MGP_CAROLIEiJ_G0025163Smg510088.268ENSGACG00000013142smg59962.388Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025163Smg510096.648ENSGAGG00000016131SMG510078.327Gopherus_agassizii
MGP_CAROLIEiJ_G0025163Smg510098.883ENSGGOG00000010932SMG510092.240Gorilla_gorilla
MGP_CAROLIEiJ_G0025163Smg510088.268ENSHBUG00000008654smg59965.524Haplochromis_burtoni
MGP_CAROLIEiJ_G0025163Smg510098.324ENSHGLG00000019152SMG510089.489Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025163Smg510097.765ENSHGLG00100015948SMG59989.364Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025163Smg510079.888ENSHCOG00000010229smg59271.981Hippocampus_comes
MGP_CAROLIEiJ_G0025163Smg510088.827ENSIPUG00000006624Smg59962.329Ictalurus_punctatus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSSTOG00000001780SMG510093.026Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSJJAG00000022763Smg510092.549Jaculus_jaculus
MGP_CAROLIEiJ_G0025163Smg510088.827ENSKMAG00000014586smg59960.993Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSLBEG00000002145smg59966.216Labrus_bergylta
MGP_CAROLIEiJ_G0025163Smg510088.827ENSLACG00000010521SMG510064.510Latimeria_chalumnae
MGP_CAROLIEiJ_G0025163Smg510088.268ENSLOCG00000008380smg59960.649Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSLAFG00000006241SMG510089.882Loxodonta_africana
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMFAG00000045357SMG510092.633Macaca_fascicularis
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMMUG00000000090SMG510092.633Macaca_mulatta
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMNEG00000044425SMG510092.534Macaca_nemestrina
MGP_CAROLIEiJ_G0025163Smg510086.204ENSMLEG00000041192SMG510086.399Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025163Smg510089.385ENSMAMG00000010683smg510060.226Mastacembelus_armatus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSMZEG00005015815smg59964.875Maylandia_zebra
MGP_CAROLIEiJ_G0025163Smg56358.548ENSMZEG00005016543smg510059.789Maylandia_zebra
MGP_CAROLIEiJ_G0025163Smg57363.571ENSMGAG00000017349-10060.526Meleagris_gallopavo
MGP_CAROLIEiJ_G0025163Smg510097.765ENSMAUG00000010381Smg510096.264Mesocricetus_auratus
MGP_CAROLIEiJ_G0025163Smg59858.523ENSMAUG00000000043-9643.674Mesocricetus_auratus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMICG00000002257SMG510092.927Microcebus_murinus
MGP_CAROLIEiJ_G0025163Smg510058.333ENSMOCG00000008423-7154.074Microtus_ochrogaster
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMOCG00000016590Smg510095.878Microtus_ochrogaster
MGP_CAROLIEiJ_G0025163Smg510080.447ENSMMOG00000017199smg59960.541Mola_mola
MGP_CAROLIEiJ_G0025163Smg59836.000ENSMODG00000004735-8640.374Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg59838.857ENSMODG00000004511-9934.442Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg510098.324ENSMODG00000016901SMG59887.064Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg59839.429ENSMODG00000004532-9237.805Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg59837.500ENSMODG00000010675-8538.021Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg59837.500ENSMODG00000021488-9935.556Monodelphis_domestica
MGP_CAROLIEiJ_G0025163Smg510083.799ENSMALG00000010375smg59960.320Monopterus_albus
MGP_CAROLIEiJ_G0025163Smg5100100.000ENSMUSG00000001415Smg510099.410Mus_musculus
MGP_CAROLIEiJ_G0025163Smg510098.883MGP_PahariEiJ_G0026606Smg510098.883Mus_pahari
MGP_CAROLIEiJ_G0025163Smg5100100.000MGP_SPRETEiJ_G0026104Smg5100100.000Mus_spretus
MGP_CAROLIEiJ_G0025163Smg59696.491ENSMPUG00000004546SMG510088.538Mustela_putorius_furo
MGP_CAROLIEiJ_G0025163Smg510098.883ENSMLUG00000008518SMG510091.577Myotis_lucifugus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSNGAG00000020706Smg510093.026Nannospalax_galili
MGP_CAROLIEiJ_G0025163Smg510057.222ENSNGAG00000012101-9844.200Nannospalax_galili
MGP_CAROLIEiJ_G0025163Smg510088.268ENSNBRG00000004332smg59864.012Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025163Smg510098.324ENSNLEG00000012439SMG510091.945Nomascus_leucogenys
MGP_CAROLIEiJ_G0025163Smg510098.324ENSMEUG00000012834SMG510085.167Notamacropus_eugenii
MGP_CAROLIEiJ_G0025163Smg510098.883ENSOPRG00000009152SMG510090.472Ochotona_princeps
MGP_CAROLIEiJ_G0025163Smg510098.883ENSODEG00000012237SMG510091.552Octodon_degus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSONIG00000008632smg59961.710Oreochromis_niloticus
MGP_CAROLIEiJ_G0025163Smg59953.371ENSOCUG00000023338-9940.219Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSOCUG00000012886SMG510091.952Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSORLG00000016239smg59961.712Oryzias_latipes
MGP_CAROLIEiJ_G0025163Smg510088.268ENSORLG00020013127smg59965.328Oryzias_latipes_hni
MGP_CAROLIEiJ_G0025163Smg510088.268ENSORLG00015019014smg59965.234Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0025163Smg510088.268ENSOMEG00000021330smg59260.302Oryzias_melastigma
MGP_CAROLIEiJ_G0025163Smg510098.324ENSOGAG00000004966SMG510091.159Otolemur_garnettii
MGP_CAROLIEiJ_G0025163Smg510057.692ENSOARG00000011963-9943.470Ovis_aries
MGP_CAROLIEiJ_G0025163Smg510098.883ENSOARG00000005778SMG510091.650Ovis_aries
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPPAG00000011996SMG510092.240Pan_paniscus
MGP_CAROLIEiJ_G0025163Smg510098.324ENSPPRG00000011901SMG510090.332Panthera_pardus
MGP_CAROLIEiJ_G0025163Smg510093.296ENSPTIG00000007892SMG59883.401Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPTRG00000023925SMG510092.436Pan_troglodytes
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPTRG00000049282-10092.436Pan_troglodytes
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPANG00000011201SMG510092.731Papio_anubis
MGP_CAROLIEiJ_G0025163Smg510088.827ENSPKIG00000009402smg59966.992Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0025163Smg510096.648ENSPSIG00000015198SMG510079.125Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025163Smg510083.799ENSPMGG00000010465smg59960.589Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPEMG00000001819Smg510097.345Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025163Smg510057.222ENSPEMG00000010022-9544.580Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025163Smg510071.508ENSPMAG00000000410smg510050.951Petromyzon_marinus
MGP_CAROLIEiJ_G0025163Smg510098.324ENSPCIG00000018938SMG510086.555Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSPFOG00000010191smg59962.410Poecilia_formosa
MGP_CAROLIEiJ_G0025163Smg510088.268ENSPLAG00000009332smg59962.478Poecilia_latipinna
MGP_CAROLIEiJ_G0025163Smg510088.268ENSPMEG00000014105smg59965.800Poecilia_mexicana
MGP_CAROLIEiJ_G0025163Smg510088.268ENSPREG00000017713smg59963.106Poecilia_reticulata
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPPYG00000000723SMG510092.436Pongo_abelii
MGP_CAROLIEiJ_G0025163Smg510098.324ENSPCAG00000008412SMG58195.580Procavia_capensis
MGP_CAROLIEiJ_G0025163Smg510098.883ENSPCOG00000004741SMG510092.633Propithecus_coquereli
MGP_CAROLIEiJ_G0025163Smg510082.006ENSPVAG00000016748SMG510082.515Pteropus_vampyrus
MGP_CAROLIEiJ_G0025163Smg510087.709ENSPNYG00000013397smg59960.958Pundamilia_nyererei
MGP_CAROLIEiJ_G0025163Smg510088.268ENSPNAG00000028363smg59962.636Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025163Smg510098.324ENSRNOG00000019590Smg510098.230Rattus_norvegicus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSRBIG00000027428SMG510092.436Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025163Smg510098.883ENSRROG00000030035SMG510092.338Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025163Smg510098.883ENSSBOG00000033339SMG510092.141Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025163Smg510098.324ENSSHAG00000014163SMG510085.700Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025163Smg59944.068ENSSHAG00000009572-8041.278Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025163Smg59941.243ENSSHAG00000000935-9740.244Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025163Smg59942.373ENSSHAG00000000561-8739.895Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025163Smg510087.151ENSSFOG00015024175smg59965.667Scleropages_formosus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSSMAG00000013059smg59961.388Scophthalmus_maximus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSSDUG00000007122smg59961.647Seriola_dumerili
MGP_CAROLIEiJ_G0025163Smg510088.268ENSSLDG00000011418smg59961.956Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025163Smg59077.584ENSSARG00000012484SMG510077.040Sorex_araneus
MGP_CAROLIEiJ_G0025163Smg59695.906ENSSPUG00000002260SMG510075.852Sphenodon_punctatus
MGP_CAROLIEiJ_G0025163Smg510088.827ENSSPAG00000014266smg59865.243Stegastes_partitus
MGP_CAROLIEiJ_G0025163Smg510098.883ENSSSCG00000006490-10092.927Sus_scrofa
MGP_CAROLIEiJ_G0025163Smg59978.090ENSSSCG00000039308-10071.850Sus_scrofa
MGP_CAROLIEiJ_G0025163Smg58841.250ENSSSCG00000037182-8536.122Sus_scrofa
MGP_CAROLIEiJ_G0025163Smg510095.028ENSTGUG00000003748-10079.630Taeniopygia_guttata
MGP_CAROLIEiJ_G0025163Smg510088.268ENSTRUG00000012580smg59964.569Takifugu_rubripes
MGP_CAROLIEiJ_G0025163Smg510087.709ENSTNIG00000010303smg59965.370Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025163Smg57798.551ENSTBEG00000002777SMG56098.522Tupaia_belangeri
MGP_CAROLIEiJ_G0025163Smg510098.324ENSTTRG00000001401SMG510087.033Tursiops_truncatus
MGP_CAROLIEiJ_G0025163Smg510097.765ENSUAMG00000013721SMG510089.872Ursus_americanus
MGP_CAROLIEiJ_G0025163Smg510092.179ENSUMAG00000018041SMG59785.341Ursus_maritimus
MGP_CAROLIEiJ_G0025163Smg59881.974ENSVPAG00000009446SMG59982.175Vicugna_pacos
MGP_CAROLIEiJ_G0025163Smg510098.324ENSVVUG00000005887SMG510090.855Vulpes_vulpes
MGP_CAROLIEiJ_G0025163Smg57764.780ENSXETG00000033791SMG59964.403Xenopus_tropicalis
MGP_CAROLIEiJ_G0025163Smg510088.268ENSXCOG00000004379smg59970.330Xiphophorus_couchianus
MGP_CAROLIEiJ_G0025163Smg510088.268ENSXMAG00000013499smg59966.181Xiphophorus_maculatus

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