EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025227 (Gene tree)
Gene ID: 110291138
Gene Symbol: Rab13
Alias: 0610007N03Rik|B230212B15Rik
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 12210 bases
Position: chr3:82993498-83005707
Accession: 110291138
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0058799	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0058799	-	1009	-	MGP_CAROLIEiJ_P0058799	203 (aa)	XP_021013760	UPI000A3161E8
MGP_CAROLIEiJ_T0058798	-	748	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0025227	Rab13	81	46.667	MGP_CAROLIEiJ_G0032346	Rab11a	91	48.227
MGP_CAROLIEiJ_G0025227	Rab13	95	53.807	MGP_CAROLIEiJ_G0016115	Rab1a	96	53.807
MGP_CAROLIEiJ_G0025227	Rab13	85	45.930	MGP_CAROLIEiJ_G0021415	Rab11b	95	45.930
MGP_CAROLIEiJ_G0025227	Rab13	78	44.304	MGP_CAROLIEiJ_G0030051	Rab6a	76	44.304
MGP_CAROLIEiJ_G0025227	Rab13	79	35.583	MGP_CAROLIEiJ_G0032562	Mras	78	35.583
MGP_CAROLIEiJ_G0025227	Rab13	67	30.147	MGP_CAROLIEiJ_G0028156	Arf5	72	30.147
MGP_CAROLIEiJ_G0025227	Rab13	83	47.337	MGP_CAROLIEiJ_G0025796	Rab2a	80	47.337
MGP_CAROLIEiJ_G0025227	Rab13	80	48.765	MGP_CAROLIEiJ_G0029992	Rab30	80	48.765
MGP_CAROLIEiJ_G0025227	Rab13	84	51.744	MGP_CAROLIEiJ_G0021839	Rab12	59	51.744
MGP_CAROLIEiJ_G0025227	Rab13	79	38.509	MGP_CAROLIEiJ_G0021830	Rab31	83	38.509
MGP_CAROLIEiJ_G0025227	Rab13	82	44.311	MGP_CAROLIEiJ_G0021978	Rab18	81	44.311
MGP_CAROLIEiJ_G0025227	Rab13	95	37.500	MGP_CAROLIEiJ_G0017184	Rab5c	89	37.500
MGP_CAROLIEiJ_G0025227	Rab13	84	54.118	MGP_CAROLIEiJ_G0017873	Rab15	80	54.118
MGP_CAROLIEiJ_G0025227	Rab13	78	30.818	MGP_CAROLIEiJ_G0020176	Rabl2	68	30.818
MGP_CAROLIEiJ_G0025227	Rab13	83	42.262	MGP_CAROLIEiJ_G0025171	Rab25	79	42.262
MGP_CAROLIEiJ_G0025227	Rab13	81	39.394	MGP_CAROLIEiJ_G0014015	Rab23	69	39.394
MGP_CAROLIEiJ_G0025227	Rab13	83	43.103	MGP_CAROLIEiJ_G0024976	Rab33b	76	43.103
MGP_CAROLIEiJ_G0025227	Rab13	90	40.526	MGP_CAROLIEiJ_G0023477	-	92	43.165
MGP_CAROLIEiJ_G0025227	Rab13	84	38.012	MGP_CAROLIEiJ_G0024752	Rab22a	88	38.012
MGP_CAROLIEiJ_G0025227	Rab13	94	37.073	MGP_CAROLIEiJ_G0016794	Rab34	79	37.073
MGP_CAROLIEiJ_G0025227	Rab13	78	43.038	MGP_CAROLIEiJ_G0032585	Rab6b	76	43.038
MGP_CAROLIEiJ_G0025227	Rab13	95	37.000	MGP_CAROLIEiJ_G0033573	Rab9	97	37.000
MGP_CAROLIEiJ_G0025227	Rab13	95	53.061	MGP_CAROLIEiJ_G0022536	Rab1b	98	53.061
MGP_CAROLIEiJ_G0025227	Rab13	79	39.506	MGP_CAROLIEiJ_G0029047	Kras	98	35.897
MGP_CAROLIEiJ_G0025227	Rab13	79	38.889	MGP_CAROLIEiJ_G0030681	Hras	85	38.889
MGP_CAROLIEiJ_G0025227	Rab13	75	32.468	MGP_CAROLIEiJ_G0027024	Rheb	83	32.468
MGP_CAROLIEiJ_G0025227	Rab13	95	43.299	MGP_CAROLIEiJ_G0017386	Rab37	89	43.299
MGP_CAROLIEiJ_G0025227	Rab13	78	40.123	MGP_CAROLIEiJ_G0015435	Rab36	61	40.123
MGP_CAROLIEiJ_G0025227	Rab13	62	30.952	MGP_CAROLIEiJ_G0023039	Arl3	66	30.952
MGP_CAROLIEiJ_G0025227	Rab13	62	30.000	MGP_CAROLIEiJ_G0024805	Arfrp1	67	30.000
MGP_CAROLIEiJ_G0025227	Rab13	79	37.654	MGP_CAROLIEiJ_G0025445	Nras	97	37.415
MGP_CAROLIEiJ_G0025227	Rab13	84	54.706	MGP_CAROLIEiJ_G0027632	Rab35	84	54.706
MGP_CAROLIEiJ_G0025227	Rab13	80	41.071	MGP_CAROLIEiJ_G0033427	Rab9b	83	41.071
MGP_CAROLIEiJ_G0025227	Rab13	87	42.781	MGP_CAROLIEiJ_G0033044	Rab33a	79	42.781
MGP_CAROLIEiJ_G0025227	Rab13	57	30.508	MGP_CAROLIEiJ_G0017227	Arl4d	58	30.508
MGP_CAROLIEiJ_G0025227	Rab13	95	40.415	MGP_CAROLIEiJ_G0021741	Rab5a	87	43.396
MGP_CAROLIEiJ_G0025227	Rab13	97	44.670	MGP_CAROLIEiJ_G0019238	Rab2b	98	44.670

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSG00000143545	RAB13	100	92.611	Homo_sapiens
MGP_CAROLIEiJ_G0025227	Rab13	89	80.110	ENSACIG00000008584	rab13	87	80.110	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSANAG00000030247	-	100	92.611	Aotus_nancymaae
MGP_CAROLIEiJ_G0025227	Rab13	99	77.723	ENSAMXG00000030712	rab13	99	77.723	Astyanax_mexicanus
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSBTAG00000017604	RAB13	100	91.626	Bos_taurus
MGP_CAROLIEiJ_G0025227	Rab13	80	46.012	WBGene00019317	K02E10.1	75	46.012	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0025227	Rab13	93	93.651	ENSCJAG00000009933	-	100	91.626	Callithrix_jacchus
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSCHIG00000022271	-	100	91.626	Capra_hircus
MGP_CAROLIEiJ_G0025227	Rab13	99	87.624	ENSCPOG00000011491	-	99	87.624	Cavia_porcellus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSCCAG00000028502	-	100	92.611	Cebus_capucinus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSCATG00000041779	-	100	92.611	Cercocebus_atys
MGP_CAROLIEiJ_G0025227	Rab13	100	87.192	ENSCLAG00000006603	-	100	87.192	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSCANG00000036573	-	100	92.611	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSCGRG00001021505	Rab13	100	92.611	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSCGRG00000012126	Rab13	100	92.611	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025227	Rab13	99	75.490	ENSCSEG00000002358	rab13	99	75.490	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025227	Rab13	99	76.699	ENSDARG00000034771	rab13	99	76.699	Danio_rerio
MGP_CAROLIEiJ_G0025227	Rab13	100	90.640	ENSDORG00000001591	Rab13	100	90.640	Dipodomys_ordii
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSEASG00005000683	-	100	91.626	Equus_asinus_asinus
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSECAG00000016551	RAB13	100	91.626	Equus_caballus
MGP_CAROLIEiJ_G0025227	Rab13	99	87.129	ENSEEUG00000001233	-	99	87.129	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025227	Rab13	99	75.610	ENSELUG00000012801	rab13	99	75.610	Esox_lucius
MGP_CAROLIEiJ_G0025227	Rab13	100	87.192	ENSFCAG00000045269	-	100	87.192	Felis_catus
MGP_CAROLIEiJ_G0025227	Rab13	65	96.212	ENSFDAG00000014469	-	100	96.212	Fukomys_damarensis
MGP_CAROLIEiJ_G0025227	Rab13	85	83.815	ENSFHEG00000021221	rab13	95	83.815	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025227	Rab13	99	74.510	ENSGACG00000011925	rab13	95	78.534	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025227	Rab13	85	90.751	ENSGAGG00000000742	-	99	83.000	Gopherus_agassizii
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSGGOG00000023693	RAB13	100	92.611	Gorilla_gorilla
MGP_CAROLIEiJ_G0025227	Rab13	100	86.700	ENSHGLG00000008749	RAB13	100	86.700	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025227	Rab13	100	86.700	ENSHGLG00100013608	RAB13	100	86.700	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025227	Rab13	99	72.772	ENSHCOG00000007440	rab13	95	84.393	Hippocampus_comes
MGP_CAROLIEiJ_G0025227	Rab13	99	74.396	ENSIPUG00000003199	rab13	99	74.396	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSSTOG00000011222	-	100	91.626	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025227	Rab13	100	87.685	ENSJJAG00000010575	Rab13	100	87.685	Jaculus_jaculus
MGP_CAROLIEiJ_G0025227	Rab13	99	73.786	ENSKMAG00000001908	rab13	99	73.786	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025227	Rab13	99	74.510	ENSLBEG00000026779	rab13	99	74.510	Labrus_bergylta
MGP_CAROLIEiJ_G0025227	Rab13	91	75.000	ENSLACG00000008103	-	99	75.000	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSMFAG00000041018	RAB13	100	92.611	Macaca_fascicularis
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSMNEG00000028951	-	100	92.611	Macaca_nemestrina
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSMLEG00000042247	-	100	92.611	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025227	Rab13	99	73.529	ENSMAMG00000014602	rab13	99	73.529	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSMAUG00000015713	Rab13	100	92.118	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025227	Rab13	100	90.148	ENSMICG00000010340	-	100	90.148	Microcebus_murinus
MGP_CAROLIEiJ_G0025227	Rab13	100	93.596	ENSMOCG00000021448	Rab13	100	93.596	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025227	Rab13	99	88.000	ENSMODG00000017295	-	84	88.000	Monodelphis_domestica
MGP_CAROLIEiJ_G0025227	Rab13	100	98.522	ENSMUSG00000027935	Rab13	100	98.522	Mus_musculus
MGP_CAROLIEiJ_G0025227	Rab13	99	99.010	MGP_PahariEiJ_G0026671	Rab13	99	99.010	Mus_pahari
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSNGAG00000010309	Rab13	100	92.611	Nannospalax_galili
MGP_CAROLIEiJ_G0025227	Rab13	99	73.762	ENSNBRG00000004124	rab13	99	73.762	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSNLEG00000028944	-	100	92.611	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025227	Rab13	100	88.177	ENSMEUG00000009667	-	100	88.177	Notamacropus_eugenii
MGP_CAROLIEiJ_G0025227	Rab13	100	87.192	ENSODEG00000010443	-	100	87.192	Octodon_degus
MGP_CAROLIEiJ_G0025227	Rab13	63	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
MGP_CAROLIEiJ_G0025227	Rab13	99	74.752	ENSONIG00000006340	rab13	99	74.752	Oreochromis_niloticus
MGP_CAROLIEiJ_G0025227	Rab13	88	94.382	ENSOCUG00000006286	-	100	94.382	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025227	Rab13	99	74.020	ENSOMEG00000008210	rab13	99	74.020	Oryzias_melastigma
MGP_CAROLIEiJ_G0025227	Rab13	99	88.614	ENSOGAG00000016969	-	99	88.614	Otolemur_garnettii
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSPPAG00000028435	-	100	92.611	Pan_paniscus
MGP_CAROLIEiJ_G0025227	Rab13	100	87.192	ENSPPRG00000008865	-	100	87.192	Panthera_pardus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSPTRG00000001370	RAB13	100	92.611	Pan_troglodytes
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSPANG00000004479	-	100	92.611	Papio_anubis
MGP_CAROLIEiJ_G0025227	Rab13	99	74.510	ENSPMGG00000007680	rab13	99	74.510	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0025227	Rab13	53	99.074	ENSPEMG00000017353	-	81	99.074	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025227	Rab13	100	88.670	ENSPCIG00000029350	-	100	88.670	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025227	Rab13	85	82.081	ENSPLAG00000005832	RAB13	93	82.081	Poecilia_latipinna
MGP_CAROLIEiJ_G0025227	Rab13	90	78.689	ENSPREG00000017567	rab13	99	73.267	Poecilia_reticulata
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSPPYG00000000790	-	100	92.611	Pongo_abelii
MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	ENSPCOG00000012189	-	100	91.626	Propithecus_coquereli
MGP_CAROLIEiJ_G0025227	Rab13	100	90.640	ENSPVAG00000011095	-	100	90.640	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025227	Rab13	85	84.393	ENSPNAG00000004189	rab13	92	84.393	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025227	Rab13	100	96.059	ENSRNOG00000016733	Rab13	100	96.059	Rattus_norvegicus
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSRBIG00000008552	-	100	92.118	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSRROG00000036885	-	100	92.118	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSSBOG00000020342	-	100	92.118	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025227	Rab13	100	87.685	ENSSHAG00000011866	-	100	87.685	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSSSCG00000006564	-	100	92.118	Sus_scrofa
MGP_CAROLIEiJ_G0025227	Rab13	99	75.743	ENSTRUG00000024177	rab13	99	75.743	Takifugu_rubripes
MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	ENSTBEG00000012734	-	100	92.118	Tupaia_belangeri
MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	ENSTTRG00000011183	-	100	92.611	Tursiops_truncatus
MGP_CAROLIEiJ_G0025227	Rab13	70	78.322	ENSXETG00000020729	rab13	98	76.101	Xenopus_tropicalis
MGP_CAROLIEiJ_G0025227	Rab13	85	81.503	ENSXCOG00000019533	rab13	93	81.503	Xiphophorus_couchianus