EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025542 (Gene tree)
Gene ID: 110291170
Gene Symbol: Prpf38b
Alias: 1110021E09Rik
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 9013 bases
Position: chr3:103103955-103112967
Accession: 110291170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0060024	PRP38	PF03371.15	2.8e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0060028	-	531	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060029	-	2083	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060023	-	3031	-	MGP_CAROLIEiJ_P0060023	93 (aa)	-	-
MGP_CAROLIEiJ_T0060026	-	975	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060027	-	556	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060024	-	3007	XM_021158153	MGP_CAROLIEiJ_P0060024	543 (aa)	XP_021013812	UPI000A319B4C
MGP_CAROLIEiJ_T0060025	-	2510	-	MGP_CAROLIEiJ_P0060025	181 (aa)	-	-
MGP_CAROLIEiJ_T0060030	-	3775	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025542's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	ENSG00000134186	PRPF38B	100	96.842	Homo_sapiens
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	ENSANAG00000028333	PRPF38B	100	96.842	Aotus_nancymaae
MGP_CAROLIEiJ_G0025542	Prpf38b	100	94.516	ENSCGRG00001018841	Prpf38b	100	95.247	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025542	Prpf38b	83	95.575	ENSCGRG00000002972	Prpf38b	100	95.575	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025542	Prpf38b	80	89.401	ENSDORG00000025236	-	97	89.524	Dipodomys_ordii
MGP_CAROLIEiJ_G0025542	Prpf38b	54	88.000	ENSEBUG00000001683	-	58	72.659	Eptatretus_burgeri
MGP_CAROLIEiJ_G0025542	Prpf38b	99	92.473	ENSEEUG00000014328	PRPF38B	100	89.927	Erinaceus_europaeus
MGP_CAROLIEiJ_G0025542	Prpf38b	100	89.927	ENSFDAG00000021009	PRPF38B	100	89.927	Fukomys_damarensis
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	ENSGGOG00000011288	PRPF38B	100	96.842	Gorilla_gorilla
MGP_CAROLIEiJ_G0025542	Prpf38b	91	87.149	ENSMGAG00000006188	PRPF38B	100	85.542	Meleagris_gallopavo
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.849	ENSMAUG00000019131	Prpf38b	100	95.229	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025542	Prpf38b	100	99.451	ENSMUSG00000027881	Prpf38b	100	99.451	Mus_musculus
MGP_CAROLIEiJ_G0025542	Prpf38b	100	98.936	MGP_PahariEiJ_G0026988	Prpf38b	100	98.936	Mus_pahari
MGP_CAROLIEiJ_G0025542	Prpf38b	100	99.451	MGP_SPRETEiJ_G0026492	Prpf38b	100	99.451	Mus_spretus
MGP_CAROLIEiJ_G0025542	Prpf38b	100	87.912	ENSNLEG00000030268	-	100	85.531	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025542	Prpf38b	99	95.699	ENSNLEG00000001645	-	100	95.812	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	ENSPPAG00000001260	PRPF38B	100	96.842	Pan_paniscus
MGP_CAROLIEiJ_G0025542	Prpf38b	99	95.745	ENSPPRG00000002116	PRPF38B	98	97.872	Panthera_pardus
MGP_CAROLIEiJ_G0025542	Prpf38b	99	97.826	ENSPTRG00000001032	PRPF38B	100	96.842	Pan_troglodytes
MGP_CAROLIEiJ_G0025542	Prpf38b	99	96.774	ENSPANG00000007560	PRPF38B	100	96.335	Papio_anubis
MGP_CAROLIEiJ_G0025542	Prpf38b	99	78.125	ENSPCIG00000024841	PRPF38B	100	86.182	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025542	Prpf38b	99	95.745	ENSPVAG00000011929	-	100	91.241	Pteropus_vampyrus
MGP_CAROLIEiJ_G0025542	Prpf38b	100	92.196	ENSSARG00000012818	-	100	91.091	Sorex_araneus
MGP_CAROLIEiJ_G0025542	Prpf38b	99	74.737	ENSTGUG00000004594	-	71	88.720	Taeniopygia_guttata
MGP_CAROLIEiJ_G0025542	Prpf38b	99	95.745	ENSUAMG00000023817	PRPF38B	100	88.889	Ursus_americanus