EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0025565 (Gene tree)
Gene ID
110290815
Gene Symbol
Rtca
Alias
2310009A18Rik|Rtcd1
Full Name
RNA 3'-terminal phosphate cyclase
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
19214 bases
Position
chr3:110207601-110226814
Accession
110290815
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0060121RTCPF01137.213.5e-8711
MGP_CAROLIEiJ_P0060124RTCPF01137.211.5e-2311
MGP_CAROLIEiJ_P0060121RTC_insertPF05189.132.2e-2511
MGP_CAROLIEiJ_P0060124RTC_insertPF05189.131.2e-1011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0060125-737-MGP_CAROLIEiJ_P0060125113 (aa)-UPI0001611729
MGP_CAROLIEiJ_T0060124-712-MGP_CAROLIEiJ_P0060124142 (aa)-UPI000161172A
MGP_CAROLIEiJ_T0060123-876-MGP_CAROLIEiJ_P006012352 (aa)-UPI000161172B
MGP_CAROLIEiJ_T0060122-629--- (aa)--
MGP_CAROLIEiJ_T0060121-1594XM_021157603MGP_CAROLIEiJ_P0060121366 (aa)XP_021013262UPI00000E82A6
Gene Model
Click here to download MGP_CAROLIEiJ_G0025565's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025565's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSG00000137996RTCA10093.878Homo_sapiens
MGP_CAROLIEiJ_G0025565Rtca10069.945ENSAPOG00000001345rtca9969.945Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0025565Rtca10090.141ENSAMEG00000008855RTCA10090.706Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025565Rtca10070.423ENSACIG00000019643rtca10070.219Amphilophus_citrinellus
MGP_CAROLIEiJ_G0025565Rtca10069.945ENSAOCG00000014979rtca9969.945Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025565Rtca10069.945ENSAPEG00000006945rtca9969.945Amphiprion_percula
MGP_CAROLIEiJ_G0025565Rtca10069.014ENSATEG00000006315rtca10068.033Anabas_testudineus
MGP_CAROLIEiJ_G0025565Rtca10082.394ENSAPLG00000015430RTCA10079.661Anas_platyrhynchos
MGP_CAROLIEiJ_G0025565Rtca9082.979ENSACAG00000003290RTCA9482.530Anolis_carolinensis
MGP_CAROLIEiJ_G0025565Rtca10090.984ENSANAG00000025446RTCA10090.984Aotus_nancymaae
MGP_CAROLIEiJ_G0025565Rtca10069.126ENSACLG00000020770rtca9969.126Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025565Rtca10072.535ENSAMXG00000043271rtca9871.389Astyanax_mexicanus
MGP_CAROLIEiJ_G0025565Rtca10092.623ENSBTAG00000006321RTCA10092.623Bos_taurus
MGP_CAROLIEiJ_G0025565Rtca10090.984ENSCJAG00000003398RTCA10090.984Callithrix_jacchus
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSCAFG00000020010RTCA6891.803Canis_familiaris
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSCAFG00020011528RTCA5791.803Canis_lupus_dingo
MGP_CAROLIEiJ_G0025565Rtca10092.350ENSCHIG00000018937RTCA10092.350Capra_hircus
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSTSYG00000011305RTCA10091.257Carlito_syrichta
MGP_CAROLIEiJ_G0025565Rtca9293.750ENSCPOG00000009296-9992.806Cavia_porcellus
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSCCAG00000021844RTCA10091.257Cebus_capucinus
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSCATG00000019364RTCA10090.615Cercocebus_atys
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSCLAG00000006125RTCA10091.483Chinchilla_lanigera
MGP_CAROLIEiJ_G0025565Rtca10091.530ENSCSAG00000001509RTCA10091.530Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025565Rtca10090.984ENSCHOG00000005211RTCA10090.984Choloepus_hoffmanni
MGP_CAROLIEiJ_G0025565Rtca10083.099ENSCPBG00000026658RTCA10082.787Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025565Rtca9855.556ENSCING00000007875-9855.556Ciona_intestinalis
MGP_CAROLIEiJ_G0025565Rtca9853.889ENSCSAVG00000007269-9853.889Ciona_savignyi
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSCANG00000040106RTCA10091.257Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025565Rtca92100.000ENSCGRG00001001848-8395.050Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025565Rtca10093.662ENSCGRG00001013163Rtca8595.539Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0025565Rtca92100.000ENSCGRG00000002803-8787.611Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025565Rtca10068.310ENSCSEG00000000530rtca9668.611Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0025565Rtca9266.667ENSCVAG00000021809rtca10058.197Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025565Rtca10071.038ENSDARG00000002215rtca10071.038Danio_rerio
MGP_CAROLIEiJ_G0025565Rtca10090.437ENSDNOG00000000456RTCA10090.437Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025565Rtca10093.989ENSDORG00000005448Rtca10093.989Dipodomys_ordii
MGP_CAROLIEiJ_G0025565Rtca9456.000FBgn0025630Rtca9839.106Drosophila_melanogaster
MGP_CAROLIEiJ_G0025565Rtca9660.360ENSEBUG00000008556rtca9755.932Eptatretus_burgeri
MGP_CAROLIEiJ_G0025565Rtca10091.549ENSEASG00005015926RTCA10090.710Equus_asinus_asinus
MGP_CAROLIEiJ_G0025565Rtca10091.549ENSECAG00000019831RTCA10090.710Equus_caballus
MGP_CAROLIEiJ_G0025565Rtca9297.917ENSEEUG00000001165RTCA10081.792Erinaceus_europaeus
MGP_CAROLIEiJ_G0025565Rtca9970.914ENSELUG00000003741rtca9970.914Esox_lucius
MGP_CAROLIEiJ_G0025565Rtca10092.077ENSFCAG00000024460RTCA10092.077Felis_catus
MGP_CAROLIEiJ_G0025565Rtca10081.690ENSFALG00000002443RTCA9181.765Ficedula_albicollis
MGP_CAROLIEiJ_G0025565Rtca10090.710ENSFDAG00000012070-10090.710Fukomys_damarensis
MGP_CAROLIEiJ_G0025565Rtca9870.994ENSFDAG00000016084-10070.994Fukomys_damarensis
MGP_CAROLIEiJ_G0025565Rtca7968.750ENSFHEG00000002868rtca9069.048Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025565Rtca10068.310ENSGMOG00000013264rtca10068.306Gadus_morhua
MGP_CAROLIEiJ_G0025565Rtca10083.099ENSGALG00000005277RTCA10082.514Gallus_gallus
MGP_CAROLIEiJ_G0025565Rtca10069.672ENSGAFG00000011853rtca9969.672Gambusia_affinis
MGP_CAROLIEiJ_G0025565Rtca10068.852ENSGACG00000013497rtca10068.852Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0025565Rtca10082.394ENSGAGG00000023306RTCA10083.276Gopherus_agassizii
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSGGOG00000009546-10091.803Gorilla_gorilla
MGP_CAROLIEiJ_G0025565Rtca10090.437ENSGGOG00000044018-10090.437Gorilla_gorilla
MGP_CAROLIEiJ_G0025565Rtca10068.852ENSHBUG00000002114rtca9968.852Haplochromis_burtoni
MGP_CAROLIEiJ_G0025565Rtca10090.710ENSHGLG00000002617RTCA10090.710Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025565Rtca10090.710ENSHGLG00100006056RTCA10090.710Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025565Rtca10064.208ENSHCOG00000020628rtca8964.208Hippocampus_comes
MGP_CAROLIEiJ_G0025565Rtca10074.648ENSIPUG00000024803rtca10070.765Ictalurus_punctatus
MGP_CAROLIEiJ_G0025565Rtca10090.141ENSSTOG00000013528-10084.153Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025565Rtca10082.394ENSSTOG00000033099-10080.109Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025565Rtca9293.750ENSJJAG00000016178Rtca10067.486Jaculus_jaculus
MGP_CAROLIEiJ_G0025565Rtca10071.858ENSKMAG00000006651rtca9971.858Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025565Rtca9968.975ENSLBEG00000028971rtca9968.975Labrus_bergylta
MGP_CAROLIEiJ_G0025565Rtca10067.606ENSLBEG00000002448-9968.536Labrus_bergylta
MGP_CAROLIEiJ_G0025565Rtca10077.465ENSLACG00000013666RTCA10077.322Latimeria_chalumnae
MGP_CAROLIEiJ_G0025565Rtca10073.239ENSLOCG00000000093rtca9972.404Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSLAFG00000001473RTCA10091.257Loxodonta_africana
MGP_CAROLIEiJ_G0025565Rtca10091.530ENSMFAG00000034132RTCA10091.530Macaca_fascicularis
MGP_CAROLIEiJ_G0025565Rtca10090.984ENSMMUG00000019105RTCA10090.984Macaca_mulatta
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSMNEG00000037163RTCA10090.939Macaca_nemestrina
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSMLEG00000042151RTCA10074.863Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025565Rtca10071.127ENSMAMG00000016536rtca10070.765Mastacembelus_armatus
MGP_CAROLIEiJ_G0025565Rtca10069.126ENSMZEG00005017945rtca9969.126Maylandia_zebra
MGP_CAROLIEiJ_G0025565Rtca10081.690ENSMGAG00000006892RTCA9980.878Meleagris_gallopavo
MGP_CAROLIEiJ_G0025565Rtca10096.448ENSMAUG00000008488Rtca10096.448Mesocricetus_auratus
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSMICG00000008643RTCA10091.909Microcebus_murinus
MGP_CAROLIEiJ_G0025565Rtca10095.355ENSMOCG00000016660Rtca10095.355Microtus_ochrogaster
MGP_CAROLIEiJ_G0025565Rtca10072.535ENSMMOG00000007750rtca10071.197Mola_mola
MGP_CAROLIEiJ_G0025565Rtca10087.158ENSMODG00000003557RTCA10087.158Monodelphis_domestica
MGP_CAROLIEiJ_G0025565Rtca10071.127ENSMALG00000020844rtca10070.765Monopterus_albus
MGP_CAROLIEiJ_G0025565Rtca100100.000ENSMUSG00000000339Rtca100100.000Mus_musculus
MGP_CAROLIEiJ_G0025565Rtca100100.000MGP_PahariEiJ_G0027011Rtca100100.000Mus_pahari
MGP_CAROLIEiJ_G0025565Rtca100100.000MGP_SPRETEiJ_G0026515Rtca100100.000Mus_spretus
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSMPUG00000012119RTCA10091.803Mustela_putorius_furo
MGP_CAROLIEiJ_G0025565Rtca10086.649ENSMLUG00000009922RTCA10086.649Myotis_lucifugus
MGP_CAROLIEiJ_G0025565Rtca10094.536ENSNGAG00000011540Rtca9994.536Nannospalax_galili
MGP_CAROLIEiJ_G0025565Rtca10069.126ENSNBRG00000003062rtca9969.126Neolamprologus_brichardi
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSNLEG00000031426RTCA10091.257Nomascus_leucogenys
MGP_CAROLIEiJ_G0025565Rtca9293.750ENSMEUG00000010030-7772.727Notamacropus_eugenii
MGP_CAROLIEiJ_G0025565Rtca10093.662ENSOPRG00000012092RTCA7188.104Ochotona_princeps
MGP_CAROLIEiJ_G0025565Rtca10088.732ENSODEG00000006990RTCA9691.168Octodon_degus
MGP_CAROLIEiJ_G0025565Rtca10068.852ENSONIG00000007753rtca9968.852Oreochromis_niloticus
MGP_CAROLIEiJ_G0025565Rtca10085.211ENSOANG00000012055RTCA9884.227Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0025565Rtca10092.254ENSOCUG00000014247RTCA10092.077Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025565Rtca10069.399ENSORLG00000013605rtca10069.399Oryzias_latipes
MGP_CAROLIEiJ_G0025565Rtca10069.399ENSORLG00020001904rtca10069.399Oryzias_latipes_hni
MGP_CAROLIEiJ_G0025565Rtca10069.672ENSORLG00015021064rtca10069.672Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0025565Rtca10071.127ENSOMEG00000000756rtca10070.219Oryzias_melastigma
MGP_CAROLIEiJ_G0025565Rtca9495.918ENSOGAG00000005627RTCA10082.514Otolemur_garnettii
MGP_CAROLIEiJ_G0025565Rtca10089.437ENSOARG00000018122RTCA10091.195Ovis_aries
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSPPAG00000035119RTCA10091.262Pan_paniscus
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSPPRG00000000350RTCA10091.803Panthera_pardus
MGP_CAROLIEiJ_G0025565Rtca10091.803ENSPTIG00000012816RTCA10091.803Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSPTRG00000001004RTCA10090.615Pan_troglodytes
MGP_CAROLIEiJ_G0025565Rtca10091.530ENSPANG00000000346RTCA10091.530Papio_anubis
MGP_CAROLIEiJ_G0025565Rtca10073.239ENSPKIG00000001653rtca10071.858Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0025565Rtca10083.803ENSPSIG00000011408RTCA10083.607Pelodiscus_sinensis
MGP_CAROLIEiJ_G0025565Rtca7662.791ENSPMGG00000022529rtca9761.438Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0025565Rtca10096.448ENSPEMG00000018582Rtca10096.448Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025565Rtca10061.972ENSPMAG00000009110rtca9958.197Petromyzon_marinus
MGP_CAROLIEiJ_G0025565Rtca10087.158ENSPCIG00000007684RTCA10087.158Phascolarctos_cinereus
MGP_CAROLIEiJ_G0025565Rtca10070.027ENSPFOG00000004824rtca10070.027Poecilia_formosa
MGP_CAROLIEiJ_G0025565Rtca10070.219ENSPLAG00000011753rtca9970.219Poecilia_latipinna
MGP_CAROLIEiJ_G0025565Rtca10070.219ENSPMEG00000020469rtca9970.219Poecilia_mexicana
MGP_CAROLIEiJ_G0025565Rtca10071.038ENSPREG00000001365rtca9971.038Poecilia_reticulata
MGP_CAROLIEiJ_G0025565Rtca10091.257ENSPPYG00000001115RTCA10091.257Pongo_abelii
MGP_CAROLIEiJ_G0025565Rtca9293.750ENSPPYG00000029514-9790.816Pongo_abelii
MGP_CAROLIEiJ_G0025565Rtca10089.437ENSPCAG00000005076RTCA10087.158Procavia_capensis
MGP_CAROLIEiJ_G0025565Rtca10096.154ENSPCOG00000005603RTCA10096.154Propithecus_coquereli
MGP_CAROLIEiJ_G0025565Rtca9497.959ENSPVAG00000009478RTCA10087.335Pteropus_vampyrus
MGP_CAROLIEiJ_G0025565Rtca10069.126ENSPNYG00000004722rtca9969.126Pundamilia_nyererei
MGP_CAROLIEiJ_G0025565Rtca10073.239ENSPNAG00000022270rtca10070.765Pygocentrus_nattereri
MGP_CAROLIEiJ_G0025565Rtca10098.592ENSRNOG00000014575Rtca10098.361Rattus_norvegicus
MGP_CAROLIEiJ_G0025565Rtca10089.437ENSRBIG00000041180RTCA10089.968Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025565Rtca10090.710ENSRROG00000024929RTCA10090.710Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025565Rtca10091.549ENSSBOG00000028626RTCA10090.710Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025565Rtca10088.251ENSSHAG00000001758RTCA10088.251Sarcophilus_harrisii
MGP_CAROLIEiJ_G0025565Rtca9868.333ENSSMAG00000014680rtca9768.333Scophthalmus_maximus
MGP_CAROLIEiJ_G0025565Rtca10069.718ENSSDUG00000015585rtca9769.167Seriola_dumerili
MGP_CAROLIEiJ_G0025565Rtca10069.014ENSSLDG00000018985rtca9569.516Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025565Rtca9286.260ENSSARG00000013993RTCA10083.596Sorex_araneus
MGP_CAROLIEiJ_G0025565Rtca9285.417ENSSPUG00000016262-8886.331Sphenodon_punctatus
MGP_CAROLIEiJ_G0025565Rtca10068.852ENSSPAG00000011938rtca9968.852Stegastes_partitus
MGP_CAROLIEiJ_G0025565Rtca10092.958ENSSSCG00000006865RTCA10092.896Sus_scrofa
MGP_CAROLIEiJ_G0025565Rtca10082.394ENSTGUG00000005154RTCA10082.240Taeniopygia_guttata
MGP_CAROLIEiJ_G0025565Rtca8463.158ENSTRUG00000002431-9566.892Takifugu_rubripes
MGP_CAROLIEiJ_G0025565Rtca10070.423ENSTRUG00000008799rtca10069.672Takifugu_rubripes
MGP_CAROLIEiJ_G0025565Rtca10072.535ENSTNIG00000004725rtca10071.038Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025565Rtca9491.837ENSTBEG00000000943RTCA8265.546Tupaia_belangeri
MGP_CAROLIEiJ_G0025565Rtca10090.141ENSTTRG00000015327RTCA10088.391Tursiops_truncatus
MGP_CAROLIEiJ_G0025565Rtca10089.437ENSUAMG00000017265RTCA9689.736Ursus_americanus
MGP_CAROLIEiJ_G0025565Rtca10090.710ENSUMAG00000007881RTCA10090.710Ursus_maritimus
MGP_CAROLIEiJ_G0025565Rtca10090.845ENSVPAG00000001039RTCA8481.073Vicugna_pacos
MGP_CAROLIEiJ_G0025565Rtca10091.530ENSVVUG00000022041RTCA6891.530Vulpes_vulpes
MGP_CAROLIEiJ_G0025565Rtca9571.963ENSXETG00000031661RTCA9967.213Xenopus_tropicalis
MGP_CAROLIEiJ_G0025565Rtca9968.085ENSXCOG00000008002rtca10060.656Xiphophorus_couchianus
MGP_CAROLIEiJ_G0025565Rtca10069.672ENSXMAG00000005482rtca9969.672Xiphophorus_maculatus

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