EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0025627 (Gene tree)
Gene ID: 110291391
Gene Symbol: Gar1
Alias: C430047J18Rik|GAR1|Nola1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 6424 bases
Position: chr3:123420003-123426426
Accession: 110291391
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0060492	Gar1	PF04410.14	6e-39	1	1
MGP_CAROLIEiJ_P0060487	Gar1	PF04410.14	7.2e-39	1	1
MGP_CAROLIEiJ_P0060488	Gar1	PF04410.14	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0060488	-	519	-	MGP_CAROLIEiJ_P0060488	79 (aa)	-	UPI0001611739
MGP_CAROLIEiJ_T0060489	-	417	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060487	-	1266	XM_021158518	MGP_CAROLIEiJ_P0060487	232 (aa)	XP_021014177	UPI000A3180BB
MGP_CAROLIEiJ_T0060492	-	770	-	MGP_CAROLIEiJ_P0060492	216 (aa)	-	-
MGP_CAROLIEiJ_T0060491	-	433	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0060490	-	529	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0025627's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0025627's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSG00000109534	GAR1	50	96.330	Homo_sapiens
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSAPOG00000019754	gar1	82	85.915	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSAMEG00000004605	GAR1	53	94.495	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0025627	Gar1	96	92.105	ENSAOCG00000020947	gar1	50	95.327	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0025627	Gar1	96	92.105	ENSAPEG00000001676	gar1	50	95.327	Amphiprion_percula
MGP_CAROLIEiJ_G0025627	Gar1	96	94.805	ENSATEG00000003733	gar1	50	95.327	Anabas_testudineus
MGP_CAROLIEiJ_G0025627	Gar1	70	92.727	ENSAPLG00000010926	GAR1	59	90.566	Anas_platyrhynchos
MGP_CAROLIEiJ_G0025627	Gar1	70	94.545	ENSACAG00000010031	GAR1	50	91.509	Anolis_carolinensis
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSANAG00000021608	GAR1	50	96.330	Aotus_nancymaae
MGP_CAROLIEiJ_G0025627	Gar1	99	90.361	ENSACLG00000010029	gar1	61	85.926	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSBTAG00000000748	GAR1	52	95.413	Bos_taurus
MGP_CAROLIEiJ_G0025627	Gar1	59	57.447	WBGene00022046	Y66H1A.4	58	56.944	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSCJAG00000004041	GAR1	50	96.330	Callithrix_jacchus
MGP_CAROLIEiJ_G0025627	Gar1	66	100.000	ENSCAFG00020015566	GAR1	57	95.413	Canis_lupus_dingo
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSCHIG00000016026	-	52	95.413	Capra_hircus
MGP_CAROLIEiJ_G0025627	Gar1	52	97.561	ENSCHIG00000011049	-	55	84.404	Capra_hircus
MGP_CAROLIEiJ_G0025627	Gar1	70	89.091	ENSTSYG00000026632	-	56	88.073	Carlito_syrichta
MGP_CAROLIEiJ_G0025627	Gar1	99	93.590	ENSTSYG00000013668	-	51	96.330	Carlito_syrichta
MGP_CAROLIEiJ_G0025627	Gar1	100	95.000	ENSCAPG00000014977	-	100	95.000	Cavia_aperea
MGP_CAROLIEiJ_G0025627	Gar1	99	94.937	ENSCPOG00000004216	GAR1	50	95.413	Cavia_porcellus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSCCAG00000029372	GAR1	50	96.330	Cebus_capucinus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSCATG00000021854	GAR1	55	96.330	Cercocebus_atys
MGP_CAROLIEiJ_G0025627	Gar1	100	96.250	ENSCLAG00000005335	GAR1	100	96.250	Chinchilla_lanigera
MGP_CAROLIEiJ_G0025627	Gar1	66	100.000	ENSCSAG00000003922	GAR1	55	96.330	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSCPBG00000004310	GAR1	54	93.396	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0025627	Gar1	63	74.000	ENSCING00000005744	-	52	65.714	Ciona_intestinalis
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSCANG00000039262	GAR1	50	95.413	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0025627	Gar1	99	97.436	ENSCGRG00000010165	-	100	94.531	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSCVAG00000002103	gar1	72	93.388	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0025627	Gar1	99	94.872	ENSDNOG00000037632	GAR1	55	95.413	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSDORG00000000482	Gar1	50	94.495	Dipodomys_ordii
MGP_CAROLIEiJ_G0025627	Gar1	86	58.896	FBgn0011824	CG4038	79	54.088	Drosophila_melanogaster
MGP_CAROLIEiJ_G0025627	Gar1	91	66.038	ENSEBUG00000011178	gar1	81	71.014	Eptatretus_burgeri
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSEASG00005004658	GAR1	50	96.330	Equus_asinus_asinus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSECAG00000013624	GAR1	55	95.413	Equus_caballus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSFCAG00000040791	-	52	95.413	Felis_catus
MGP_CAROLIEiJ_G0025627	Gar1	68	51.020	ENSFCAG00000025841	-	57	60.504	Felis_catus
MGP_CAROLIEiJ_G0025627	Gar1	100	96.250	ENSFDAG00000006333	-	100	96.250	Fukomys_damarensis
MGP_CAROLIEiJ_G0025627	Gar1	70	94.545	ENSFHEG00000008068	gar1	63	85.821	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0025627	Gar1	67	98.113	ENSGAGG00000004393	GAR1	54	93.333	Gopherus_agassizii
MGP_CAROLIEiJ_G0025627	Gar1	89	72.263	ENSGGOG00000036205	-	54	77.064	Gorilla_gorilla
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSGGOG00000008681	GAR1	50	97.248	Gorilla_gorilla
MGP_CAROLIEiJ_G0025627	Gar1	99	93.590	ENSHGLG00000000493	GAR1	72	100.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0025627	Gar1	66	100.000	ENSHGLG00100016873	-	72	100.000	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSIPUG00000003194	gar1	58	86.885	Ictalurus_punctatus
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSKMAG00000010402	gar1	51	92.523	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0025627	Gar1	70	92.727	ENSLACG00000003306	GAR1	64	88.679	Latimeria_chalumnae
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSLOCG00000011711	GAR1	74	84.559	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSMFAG00000024592	GAR1	50	96.330	Macaca_fascicularis
MGP_CAROLIEiJ_G0025627	Gar1	72	78.947	ENSMFAG00000003572	-	53	81.651	Macaca_fascicularis
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSMMUG00000021225	GAR1	50	96.330	Macaca_mulatta
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSMNEG00000042594	GAR1	50	96.330	Macaca_nemestrina
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSMLEG00000002496	GAR1	50	96.330	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0025627	Gar1	68	98.148	ENSMAMG00000017583	gar1	62	87.681	Mastacembelus_armatus
MGP_CAROLIEiJ_G0025627	Gar1	99	90.361	ENSMZEG00005001281	gar1	61	85.926	Maylandia_zebra
MGP_CAROLIEiJ_G0025627	Gar1	100	98.734	ENSMAUG00000016788	Gar1	100	98.734	Mesocricetus_auratus
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSMICG00000003326	GAR1	50	95.413	Microcebus_murinus
MGP_CAROLIEiJ_G0025627	Gar1	100	98.734	ENSMOCG00000001340	Gar1	100	98.734	Microtus_ochrogaster
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSMMOG00000004156	gar1	52	93.458	Mola_mola
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSMODG00000005897	GAR1	55	85.385	Monodelphis_domestica
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSMALG00000009672	gar1	73	88.722	Monopterus_albus
MGP_CAROLIEiJ_G0025627	Gar1	100	100.000	ENSMUSG00000028010	Gar1	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0025627	Gar1	100	100.000	MGP_PahariEiJ_G0027076	Gar1	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0025627	Gar1	100	100.000	MGP_SPRETEiJ_G0026580	Gar1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSMPUG00000008615	GAR1	52	95.413	Mustela_putorius_furo
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSNGAG00000008268	Gar1	71	98.182	Nannospalax_galili
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSNLEG00000016578	GAR1	50	96.330	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025627	Gar1	72	77.193	ENSNLEG00000034282	-	55	80.734	Nomascus_leucogenys
MGP_CAROLIEiJ_G0025627	Gar1	99	96.203	ENSODEG00000011083	GAR1	56	93.578	Octodon_degus
MGP_CAROLIEiJ_G0025627	Gar1	70	98.182	ENSOANG00000003665	GAR1	54	86.667	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSOCUG00000003901	GAR1	51	95.413	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0025627	Gar1	78	96.774	ENSOGAG00000004693	GAR1	51	95.413	Otolemur_garnettii
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSOARG00000004910	GAR1	52	95.413	Ovis_aries
MGP_CAROLIEiJ_G0025627	Gar1	99	94.872	ENSPPAG00000014081	GAR1	55	96.330	Pan_paniscus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSPPRG00000023697	GAR1	52	95.413	Panthera_pardus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSPTIG00000021565	GAR1	52	95.413	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0025627	Gar1	70	80.000	ENSPTRG00000049340	-	76	71.975	Pan_troglodytes
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSPTRG00000016364	GAR1	55	96.330	Pan_troglodytes
MGP_CAROLIEiJ_G0025627	Gar1	72	78.947	ENSPANG00000033062	-	68	69.880	Papio_anubis
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSPANG00000000639	GAR1	50	96.330	Papio_anubis
MGP_CAROLIEiJ_G0025627	Gar1	100	98.734	ENSPEMG00000015838	Gar1	100	98.734	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSPFOG00000024155	gar1	81	85.034	Poecilia_formosa
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSPLAG00000015056	gar1	81	85.034	Poecilia_latipinna
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSPMEG00000009320	gar1	82	85.714	Poecilia_mexicana
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSPREG00000010377	gar1	74	83.221	Poecilia_reticulata
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSPPYG00000014996	GAR1	50	96.330	Pongo_abelii
MGP_CAROLIEiJ_G0025627	Gar1	82	88.136	ENSPCOG00000027049	GAR1	56	96.330	Propithecus_coquereli
MGP_CAROLIEiJ_G0025627	Gar1	71	100.000	ENSRNOG00000061146	Gar1	64	99.083	Rattus_norvegicus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSRBIG00000019547	GAR1	55	96.330	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025627	Gar1	71	76.786	ENSRBIG00000042411	-	53	79.817	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSRROG00000028454	GAR1	55	96.330	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025627	Gar1	71	76.786	ENSRROG00000044348	-	52	79.817	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0025627	Gar1	94	45.946	YHR089C	-	73	54.622	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSSBOG00000024785	GAR1	50	96.330	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSSFOG00015013198	gar1	68	84.848	Scleropages_formosus
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSSMAG00000009976	gar1	52	92.105	Scophthalmus_maximus
MGP_CAROLIEiJ_G0025627	Gar1	96	94.805	ENSSLDG00000023264	gar1	50	94.393	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSSPUG00000008707	GAR1	59	94.340	Sphenodon_punctatus
MGP_CAROLIEiJ_G0025627	Gar1	96	94.805	ENSSPAG00000005974	gar1	50	94.737	Stegastes_partitus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSSSCG00000009137	GAR1	54	95.413	Sus_scrofa
MGP_CAROLIEiJ_G0025627	Gar1	70	94.545	ENSTGUG00000004185	GAR1	67	90.909	Taeniopygia_guttata
MGP_CAROLIEiJ_G0025627	Gar1	70	90.909	ENSTRUG00000020580	gar1	51	91.589	Takifugu_rubripes
MGP_CAROLIEiJ_G0025627	Gar1	82	84.615	ENSTNIG00000013023	gar1	61	94.393	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0025627	Gar1	66	100.000	ENSUAMG00000005652	GAR1	57	95.413	Ursus_americanus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSUMAG00000000776	GAR1	53	95.413	Ursus_maritimus
MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	ENSVVUG00000017612	GAR1	56	95.413	Vulpes_vulpes
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSXCOG00000014843	GAR1	66	90.984	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	ENSXMAG00000002316	GAR1	65	90.984	Xiphophorus_maculatus